Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 304 2e-77
seq231358 111 3e-19
seq28532 111 3e-19
seq103378 100 5e-16
seq54337 95.1 2e-14
>seq44246
Length=4029
Score = 304 bits (336), Expect = 2e-77
Identities = 860/1295 (66%), Gaps = 52/1295 (4%)
Strand=Plus/Minus
Query 221369 TCGTACGACTCGTAGGGACCGTACAGTTCGGC---CTGGGCGCAAGACTGCGTC-AGGGC 221424
||||||| |||||||| || ||| ||||| | | |||| | || || |||||
Sbjct 1520 TCGTACGTGTCGTAGGGGCC---CAGCTCGGCGGCCAGTTCGCA-GCTGGCCTCCAGGGC 1465
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484
|||| ||||||||||||||||||| |||| || || ||||||||| ||
Sbjct 1464 GGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAA 1405
Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544
||| ||||| || ||| |||||||||| ||||| || ||||||||||| |||||
Sbjct 1404 GGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCCT 1345
Query 221545 GTGTCTCCTGTTGGA---AGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
||| | | ||||||| | ||||| || ||||| || || ||||| | || || |
Sbjct 1344 GTGGCGCTTGTTGGACTGATCGGCC---TCGGGCACCGGGTAGAAGTTAATCTCTATGAT 1288
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCAC---CTCGGTCAGCTTCTGGTGATTGAA 221658
||||| |||||| ||| ||||| ||| ||| ||| |||| | | | ||
Sbjct 1287 CTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTC---CAGTTTCTTGA-AGTCAA 1232
Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718
|| || ||| ||| ||||| | | | | || || || | | ||||||
Sbjct 1231 ----AAGTC--CGC--TCG----GGGGTGACGTACATG--TTGAGAGCGATGGAGGCCAG 1186
Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778
|||||||| || ||||| || ||| || | | ||| || || |||||||||||
Sbjct 1185 ATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCT 1126
Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838
|||||||||||| ||||||| | || || ||| | ||| ||||| ||||| ||
Sbjct 1125 GCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAG 1066
Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897
||| | || ||| | |||| ||| | | | | || || ||| | | ||| |
Sbjct 1065 CATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTG-CTGAG 1007
Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957
| ||||| | |||||| ||||| || |||| ||| |||||| | ||||
Sbjct 1006 CCTTCACCACACGCTTGACCCGGCCCTCCCGCT---CATATTGGGTGTAGAGCTTCTCAA 950
Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017
||| || || | ||||||||| || || | | | ||||||||||||| |||||
Sbjct 949 ACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGT 890
Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077
|| |||| | ||||||| |||||| ||||| |||||||||| | | |||||||
Sbjct 889 CCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGAT 830
Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137
|||||| | |||||||||| || |||| ||| |||| |||| || || || | ||
Sbjct 829 CTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGT 770
Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197
|| ||||||||||||||| || | ||| | |||||||||||||||||||| ||||| |
Sbjct 769 CAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGT 710
Query 222198 CCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA 222256
| | ||| | | | | |||| ||| | || | || ||||| ||||||||
Sbjct 709 CGA-CATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTG 651
Query 222257 CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATA 222316
||||||||||| ||||| ||| || | | | ||| | | || |||||
Sbjct 650 CCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATT 591
Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376
|| || || || ||||| | || || ||| || ||||| ||||||||| ||
Sbjct 590 CCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATG 531
Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436
||| ||||| | | | ||||| || || || | ||||| | ||| | |||
Sbjct 530 CTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCG 471
Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496
|| || |||||||| |||||| || || | | || | ||| | ||| |||||
Sbjct 470 TTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCG 411
Query 222497 ACGACTCTGGCGATGT-TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555
| | | | |||| | ||| || || | | | | |||||| ||||| |||
Sbjct 410 ATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACAC-CCTCATGAGCATGTGCTG 352
Query 222556 GGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTT 222612
|||| || |||| || || || || |||||||| ||| ||||| |||||
Sbjct 351 CGGCCGCTCCGCCACTTTGCCGTT-GATCT--TCAGCAGGTAGGATCGCTCCAGCGTCTT 295
Query 222613 GAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCG 222646
||| || ||| ||||| ||| ||| |||||| ||
Sbjct 294 GAAGCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCG 261
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124
|||||| || ||| || || ||||| ||| |||||| || || ||| || |
Sbjct 1814 CATCTCCTCGCCCCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGAT 1755
Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184
||||| ||||| || || |||| | ||| | ||| ||| | | ||||||
Sbjct 1754 CTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGA 1695
Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244
||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| ||
Sbjct 1694 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 1635
Query 221245 GTT 221247
|||
Sbjct 1634 GTT 1632
>seq231358
Length=2322
Score = 111 bits (122), Expect = 3e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
|| ||||| |||| ||||| || || |||||||| ||||| ||| || || || ||
Sbjct 763 GGAGAGCGAGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGGTCCTTCGCT 704
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
|||||||||||||| ||| ||| || |||||||| ||| ||| ||||| ||||||
Sbjct 703 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAATGAGCTC 644
Query 25993 ATCAGCAGGGACGAGG 26008
|||||||| |||||||
Sbjct 643 ATCAGCAGAGACGAGG 628
>seq28532
Length=8763
Score = 111 bits (122), Expect = 3e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
|| ||||| | || || |||||||| |||||||| ||||| ||| ||||||||| ||
Sbjct 1810 GGTGAGCGCATTGTGGCTTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCGTTCGCT 1869
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
|||||||| ||||| ||| ||| || ||||||||||| ||| ||||| |||||
Sbjct 1870 GCCATCTTTTGGCTGAAGAAGAGAGGCTTAATGCCCGGGCTTACCTTCTCCAATGAGCTG 1929
Query 25993 ATCAGCAGGGACGAGG 26008
|| |||||||| ||||
Sbjct 1930 ATTAGCAGGGATGAGG 1945
>seq103378
Length=1867
Score = 100 bits (110), Expect = 5e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099
|||||||||||| ||||||||||| || || || ||||||| || |||||||||
Sbjct 1324 CATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 1265
Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159
|| |||| ||| ||| || || |||||||| | ||| |||||||||||||| ||
Sbjct 1264 ACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGGCTCCAGGTA 1205
Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182
||||| | || ||||||| ||
Sbjct 1204 CACGGCGAAGGCCCCGGGTCTCT 1182
>seq54337
Length=1748
Score = 95.1 bits (104), Expect = 2e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182
|| || || ||||| ||||||||||| | ||| | ||| ||| |||| || |||
Sbjct 1371 ACCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAATG 1312
Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242
||| ||||||||||||||||| || ||| || ||||||||||| |||| |||||||
Sbjct 1311 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAACAGCAGA 1252
Query 221243 CTGTT 221247
|||||
Sbjct 1251 CTGTT 1247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 922743427498880
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