Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq44246 304 2e-77 seq231358 111 3e-19 seq28532 111 3e-19 seq103378 100 5e-16 seq54337 95.1 2e-14 >seq44246 Length=4029 Score = 304 bits (336), Expect = 2e-77 Identities = 860/1295 (66%), Gaps = 52/1295 (4%) Strand=Plus/Minus Query 221369 TCGTACGACTCGTAGGGACCGTACAGTTCGGC---CTGGGCGCAAGACTGCGTC-AGGGC 221424 ||||||| |||||||| || ||| ||||| | | |||| | || || ||||| Sbjct 1520 TCGTACGTGTCGTAGGGGCC---CAGCTCGGCGGCCAGTTCGCA-GCTGGCCTCCAGGGC 1465 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||| ||||||||||||||||||| |||| || || ||||||||| || Sbjct 1464 GGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAA 1405 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 ||| ||||| || ||| |||||||||| ||||| || ||||||||||| ||||| Sbjct 1404 GGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCCT 1345 Query 221545 GTGTCTCCTGTTGGA---AGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 ||| | | ||||||| | ||||| || ||||| || || ||||| | || || | Sbjct 1344 GTGGCGCTTGTTGGACTGATCGGCC---TCGGGCACCGGGTAGAAGTTAATCTCTATGAT 1288 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCAC---CTCGGTCAGCTTCTGGTGATTGAA 221658 ||||| |||||| ||| ||||| ||| ||| ||| |||| | | | || Sbjct 1287 CTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTC---CAGTTTCTTGA-AGTCAA 1232 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || || ||| ||| ||||| | | | | || || || | | |||||| Sbjct 1231 ----AAGTC--CGC--TCG----GGGGTGACGTACATG--TTGAGAGCGATGGAGGCCAG 1186 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 |||||||| || ||||| || ||| || | | ||| || || ||||||||||| Sbjct 1185 ATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCT 1126 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 |||||||||||| ||||||| | || || ||| | ||| ||||| ||||| || Sbjct 1125 GCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAG 1066 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| | || ||| | |||| ||| | | | | || || ||| | | ||| | Sbjct 1065 CATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTG-CTGAG 1007 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957 | ||||| | |||||| ||||| || |||| ||| |||||| | |||| Sbjct 1006 CCTTCACCACACGCTTGACCCGGCCCTCCCGCT---CATATTGGGTGTAGAGCTTCTCAA 950 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || | ||||||||| || || | | | ||||||||||||| ||||| Sbjct 949 ACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGT 890 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 || |||| | ||||||| |||||| ||||| |||||||||| | | ||||||| Sbjct 889 CCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGAT 830 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 |||||| | |||||||||| || |||| ||| |||| |||| || || || | || Sbjct 829 CTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGT 770 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 || ||||||||||||||| || | ||| | |||||||||||||||||||| ||||| | Sbjct 769 CAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCCGCCCTGGT 710 Query 222198 CCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGA 222256 | | ||| | | | | |||| ||| | || | || ||||| |||||||| Sbjct 709 CGA-CATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTTGGAGTTG 651 Query 222257 CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATA 222316 ||||||||||| ||||| ||| || | | | ||| | | || ||||| Sbjct 650 CCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCACACCGATT 591 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 || || || || ||||| | || || ||| || ||||| ||||||||| || Sbjct 590 CCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCCCTCGATG 531 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 ||| ||||| | | | ||||| || || || | ||||| | ||| | ||| Sbjct 530 CTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGTTCCTGCG 471 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496 || || |||||||| |||||| || || | | || | ||| | ||| ||||| Sbjct 470 TTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGTAGGTCTCG 411 Query 222497 ACGACTCTGGCGATGT-TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555 | | | | |||| | ||| || || | | | | |||||| ||||| ||| Sbjct 410 ATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACAC-CCTCATGAGCATGTGCTG 352 Query 222556 GGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTT 222612 |||| || |||| || || || || |||||||| ||| ||||| ||||| Sbjct 351 CGGCCGCTCCGCCACTTTGCCGTT-GATCT--TCAGCAGGTAGGATCGCTCCAGCGTCTT 295 Query 222613 GAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCG 222646 ||| || ||| ||||| ||| ||| |||||| || Sbjct 294 GAAGCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCG 261 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || ||| || || ||||| ||| |||||| || || ||| || | Sbjct 1814 CATCTCCTCGCCCCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGAT 1755 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || || |||| | ||| | ||| ||| | | |||||| Sbjct 1754 CTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGA 1695 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 1694 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 1635 Query 221245 GTT 221247 ||| Sbjct 1634 GTT 1632 >seq231358 Length=2322 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || || |||||||| ||||| ||| || || || || Sbjct 763 GGAGAGCGAGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGGTCCTTCGCT 704 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| ||||| |||||| Sbjct 703 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAATGAGCTC 644 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 643 ATCAGCAGAGACGAGG 628 >seq28532 Length=8763 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || |||||||| |||||||| ||||| ||| ||||||||| || Sbjct 1810 GGTGAGCGCATTGTGGCTTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCGTTCGCT 1869 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||| ||||| ||| ||| || ||||||||||| ||| ||||| ||||| Sbjct 1870 GCCATCTTTTGGCTGAAGAAGAGAGGCTTAATGCCCGGGCTTACCTTCTCCAATGAGCTG 1929 Query 25993 ATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 1930 ATTAGCAGGGATGAGG 1945 >seq103378 Length=1867 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 |||||||||||| ||||||||||| || || || ||||||| || ||||||||| Sbjct 1324 CATGAAGAGGTCTGGGATCCACAGGGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 1265 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || |||| ||| ||| || || |||||||| | ||| |||||||||||||| || Sbjct 1264 ACCTGTGTTCTTCTTCATCTCTAAGAACTCAAACACGTCCAAATGCCACGGCTCCAGGTA 1205 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 ||||| | || ||||||| || Sbjct 1204 CACGGCGAAGGCCCCGGGTCTCT 1182 >seq54337 Length=1748 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||| ||||||||||| | ||| | ||| ||| |||| || ||| Sbjct 1371 ACCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAATG 1312 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| ||||||||||||||||| || ||| || ||||||||||| |||| ||||||| Sbjct 1311 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAACAGCAGA 1252 Query 221243 CTGTT 221247 ||||| Sbjct 1251 CTGTT 1247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922743427498880