Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq449735 176 5e-39 seq506238 143 3e-29 seq509673 111 2e-19 seq351952 105 7e-18 seq487923 104 2e-17 seq326422 89.7 5e-13 seq443534 87.8 2e-12 >seq449735 Length=3187 Score = 176 bits (194), Expect = 5e-39 Identities = 402/595 (68%), Gaps = 19/595 (3%) Strand=Plus/Minus Query 138315 AACAGTTCACGGGCTTTAATGCGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCGGCTT 138372 ||||||||| ||||||||||| ||||||||||| ||| | |||| ||| | Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554 Query 138373 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 138430 | |||| | || |||| ||||||||||| |||| | | || ||||| ||| Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499 Query 138431 CATTTCATGCGGACTGAACAAAGTAATGTAATCATTCTTTCCGAATCGTTCCATCATTAG 138490 || ||| || || ||||| |||||||| || | || || || |||||| Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439 Query 138491 GTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTT 138550 | ||| | || ||||| ||||| | |||||| | ||||| || || || || ||| Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379 Query 138551 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 138608 |||||| | || | || ||||| ||||| |||||||||| || || | ||| || Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321 Query 138609 GCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTC 138668 || ||||||||||| | || || || ||||| |||||| || || ||||| || || Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 138669 CAAAAAGGAATAACACCAGTATG--ACGTACTTCACCTGTACCAATCTTAGAACCTTCGG 138726 ||||||||||| ||| ||||| ||| |||| || | | ||| | ||| | Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTG 203 Query 138727 CACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTG 138786 ||||||| ||| ||||||| ||||| || || |||| || | |||| |||||||| Sbjct 202 CACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTG 143 Query 138787 AAGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGCTTCAATAACAACGCATGAAC 138846 || || | || || || | | || || || || | || || || | Sbjct 142 CAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGC 83 Query 138847 TAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAGTGAAAT 138901 ||||||| || ||||| ||||| ||| |||||||| || || || |||||||| Sbjct 82 TAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 143 bits (158), Expect = 3e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60070 ATTACAAGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60129 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 60130 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60189 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 60190 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60249 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 60250 CTTC 60253 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 138501 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATTTTTCAAA 138560 || ||||| |||||||||||||||| |||||| ||||| || || ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 138561 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138620 || | | |||||||| |||||||| | || ||| | || || || |||||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 138621 CGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138680 || | || || ||||| || ||||||||||||| || || |||| | || || ||| Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407 Query 138681 ACACCAGTATG 138691 ||| ||||| Sbjct 408 CAACCCGTATG 418 >seq351952 Length=416 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60084 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60143 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 60144 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60203 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 60204 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60256 | ||||||| || || |||||||| | |||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq487923 Length=1072 Score = 104 bits (114), Expect = 2e-17 Identities = 303/453 (67%), Gaps = 19/453 (4%) Strand=Plus/Minus Query 24113 ATACTAATTTATCTAGTACATATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 24172 ||| |||||||| || |||| || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTATATA---CATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 24173 CGTCATTTGAACGCATGCTT-ACTAC-TGCATTGATTTTCTTATCACGAATCAGGTACT- 24229 ||||| ||| ||| || || || | | ||| |||| ||||||||||| | |||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAATTTA-TTATCACGAATAAA-TACTT 415 Query 24230 GTACTGTATTCGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAACTGCATGG 24289 | || |||| ||||| || ||||||||||| ||| |||| | ||| || || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 24290 ATGGACGAGTATAAATCATGATACCACGCCGAGAATCAGGATTTTGACCAAGTTCAGCT- 24348 | || | |||||||||||| || | || | || || || | | || ||| Sbjct 354 AAGGTCTAGTATAAATCATAATTGCTTTACGTGTATTTTTATCTTTAAGTAATT--GCTC 297 Query 24349 AAACACATA-TCATACTGAGCATAGTTATCTTCTGACCAAATAGCCCAACCATAATTCGA 24407 | | || | |||| ||| || ||| | | ||||| |||||||||||| || Sbjct 296 ACGCGCAGACGCATATTGATAATTATTAGCAGCACTAAAAATACACCAACCATAATTTGA 237 Query 24408 GTTAATTTCGCCTTTAGAAGATGCTACCTGTTGCCAAATCTTCGG---TGTTTCACCTGG 24464 |||||||| |||| | || ||| | || ||||||||| || | | |||| Sbjct 236 GTTAATTTTACCTTCTGTGCTTGATACATCTTCCCAAATCTTTGGAATAGGTGCACC--- 180 Query 24465 AATATCTTTAACAAACAGACTTTGAGACTTATACCATTCAAGTTCACGCTGAATGTATTC 24524 |||||||| ||||| || |||||| ||||||| | ||| | |||| ||||| Sbjct 179 CATATCTTTTACAAATAGTGATTGAGAACGATACCATAATAATTCTTTCCGAATATATTC 120 Query 24525 ATCATTAAGAGCGCCAAAAATAAAAGGTTCATC 24557 | |||| | | | |||||| || || ||| Sbjct 119 TTTATTAGGCTCACGTAAAATATAATCTTTATC 87 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 69598 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 69655 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 69656 GAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 69709 |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 >seq443534 Length=806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 137544 TCAATATTGGGCACGACTTGATTAAATGAACCTTCTTTAGATTCTTTAACACTTACTGGA 137603 ||||| | ||||| ||||| || | ||| || || || |||| | | || || Sbjct 728 TCAATCTCAGGCACCACTTGCTTGAGGATACCGTCCTTTGACGCTTTGATAGACACCAGA 669 Query 137604 CCGCGTGGTGGCTCGATGCCGTTGGTAGAGTTAGATACCTGACTTGACGATTCACAAGGC 137663 || |||||||||||||| |||||||| | ||| | | |||||| || | ||| | ||| Sbjct 668 CCACGTGGTGGCTCGATACCGTTGGTCGCGTTGGCGATCTGACTAGAGGTCTCAGACGGC 609 Query 137664 ATAAGGGCCGAGAGTGTACTGTTACGGATTCCATAAGTTCTGATTTCAGAACGGAGTGCT 137723 || | ||| | || ||| ||| || | || | ||| ||||||||| ||| || | | Sbjct 608 ATCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGAGTGGTGATTTCAGTACGTAGGGTT 549 Query 137724 TCCCAATC 137731 |||||||| Sbjct 548 TCCCAATC 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529169818503280