Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_019505.1
Length=166452
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 181 1e-40
seq506238 143 3e-29
seq509673 109 6e-19
seq487923 107 2e-18
seq351952 105 7e-18
seq326422 89.7 5e-13
seq510909 86.0 7e-12
>seq449735
Length=3187
Score = 181 bits (200), Expect = 1e-40
Identities = 492/741 (66%), Gaps = 23/741 (3%)
Strand=Plus/Minus
Query 138304 TTTGTTGGAATAGCAATTTCACAGCACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 138363
|| ||||| | |||||||| | || || ||| || |||||||||||| || | |
Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696
Query 138364 ATAAACGGAGTATAGTTATTCGTATTATCAATGAACTGTACATAAATCCTTGCTGTTCCT 138423
|| ||||| | | |||| | |||| | |||| ||||| | | || | |
Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636
Query 138424 GAGCGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGAGCTTTAATACGCTTTTTACG 138479
| ||||| || |||| || | || |||||| ||||||||| || ||||||||
Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580
Query 138480 AAT--ATTAGGGTCTTTTTCTGCGGCTTCATACAATTCACGG-AAACG-GTCTTGGTCTT 138535
||| ||| | |||| ||| | |||| | | || |||| |||||||||||
Sbjct 579 AATTGATTCG--TCTTGTTCGTATTTTACATAAAG--CGCGTCAAACTCGTCTTGGTCTT 524
Query 138536 TAAAATAAGAATAATAAAGCTCTCCGCCCATTTCATGGGGACTGAACAAAGTAATGTAAT 138595
|||| | | || ||||| || || ||| || ||| || ||||| |||||||| |
Sbjct 523 CAAAAAATGCATCGTAAAGGCCTG-GCACAT--CAGAGGGGCTAAACAAGGTAATGTAGT 467
Query 138596 CGTTCTTTCCAAAACGTTCCATCATCAAATCATTCAGTTGAACACCATAATCCATATGAC 138655
||| || ||||| ||| | | ||| | || || || ||||| | |||||
Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407
Query 138656 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCA 138715
| | |||||| || || || || ||||||||| | || | || ||||| ||||| |
Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347
Query 138716 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCA 138773
||||||||| || || | ||| || || ||||||||||| | || || || || ||
Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289
Query 138774 TGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 138833
|||||| || || ||||| || || ||||||||||| ||| |||||| ||||
Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229
Query 138834 ACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACCAACGTTAATACCAATTCCAGC 138893
|| ||| ||| | ||| |||||||| ||| ||||||| ||||| || ||
Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169
Query 138894 GCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTATTGATAGACTTTAATGAATC 138953
|||| || | |||| |||||||| || || | || || || | | ||
Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTC 109
Query 138954 ACCTGCCTCAATAACAACGCATGAACTAAACTGCCGGGTTGGAGTACGGCAACCAGCCAT 139013
|| ||| || | || || || |||||||| || ||||| ||||| ||| |||||
Sbjct 108 GCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCAT 49
Query 139014 AATAGGAGTTGGCAATGAAAT 139034
||| || || || | ||||||
Sbjct 48 AATTGGCGTAGGTAGTGAAAT 28
>seq506238
Length=275
Score = 143 bits (158), Expect = 3e-29
Identities = 142/184 (77%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 61087 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61146
||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 61147 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61206
||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 61207 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61266
| ||||| |||||||||| ||||||||||| | || || ||||| | ||||||||||
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 61267 CTTC 61270
||||
Sbjct 218 CTTC 221
>seq509673
Length=441
Score = 109 bits (120), Expect = 6e-19
Identities = 142/193 (74%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 138634 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCA-A 138692
|| || || |||||||||||||| | ||||| ||||| ||||| |||||||||||
Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287
Query 138693 AACAAGAA-GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 138751
| ||| || || |||||||| |||||||| | || ||| | || || || ||||
Sbjct 288 ACCAATAATGA--CTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGC 345
Query 138752 CACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 138811
|||| | || || |||||||| ||||||||||||| || || |||| | || || |
Sbjct 346 CACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGA 405
Query 138812 TAACACCAGTATG 138824
|| ||| |||||
Sbjct 406 TACAACCCGTATG 418
>seq487923
Length=1072
Score = 107 bits (118), Expect = 2e-18
Identities = 150/202 (74%), Gaps = 9/202 (4%)
Strand=Plus/Minus
Query 23449 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23508
||| |||||||| |||| || || |||||||| ||||||||| |||||||| ||
Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472
Query 23509 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 23565
||||| ||||||| || || || | | ||| | ||| ||||||||||| | ||||
Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415
Query 23566 GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAATCAAATTGCATGG 23625
| || |||||||||| || ||||||||||| ||| |||| | ||| ||| || |
Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355
Query 23626 ATGGACGAGTATAAATCATGAT 23647
| || | |||||||||||| ||
Sbjct 354 AAGGTCTAGTATAAATCATAAT 333
>seq351952
Length=416
Score = 105 bits (116), Expect = 7e-18
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 61101 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61160
||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || |||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 61161 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61220
|| ||||| |||||||| || || | || ||||| || || |||| | | ||||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 61221 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61273
| ||||||| || || |||||||| | ||||||||||||||||||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206
>seq326422
Length=2068
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/115 (79%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 69938 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 69995
|||||||||||| |||||||| | | | | |||| |||||||| | | |||||
Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349
Query 69996 GAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 70049
|||| | ||||||||| ||||||| ||||||||||| |||||||||||| ||||
Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
>seq510909
Length=431
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 61089 TACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAG 61148
|||| ||| | |||||| ||||||| || ||||| ||||||| || ||||| || |
Sbjct 339 TACATACTTTTAGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCA 398
Query 61149 TTAAAGCGAACTGCATAACCGGATACACGGAT 61180
||||||||||| |||||||| |||||||| ||
Sbjct 399 TTAAAGCGAACGGCATAACCCGATACACGAAT 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529020406447040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |