Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019505.1 Length=166452 Score E Sequences producing significant alignments: (Bits) Value seq449735 181 1e-40 seq506238 143 3e-29 seq509673 109 6e-19 seq487923 107 2e-18 seq351952 105 7e-18 seq326422 89.7 5e-13 seq510909 86.0 7e-12 >seq449735 Length=3187 Score = 181 bits (200), Expect = 1e-40 Identities = 492/741 (66%), Gaps = 23/741 (3%) Strand=Plus/Minus Query 138304 TTTGTTGGAATAGCAATTTCACAGCACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 138363 || ||||| | |||||||| | || || ||| || |||||||||||| || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 138364 ATAAACGGAGTATAGTTATTCGTATTATCAATGAACTGTACATAAATCCTTGCTGTTCCT 138423 || ||||| | | |||| | |||| | |||| ||||| | | || | | Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 138424 GAGCGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGAGCTTTAATACGCTTTTTACG 138479 | ||||| || |||| || | || |||||| ||||||||| || |||||||| Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580 Query 138480 AAT--ATTAGGGTCTTTTTCTGCGGCTTCATACAATTCACGG-AAACG-GTCTTGGTCTT 138535 ||| ||| | |||| ||| | |||| | | || |||| ||||||||||| Sbjct 579 AATTGATTCG--TCTTGTTCGTATTTTACATAAAG--CGCGTCAAACTCGTCTTGGTCTT 524 Query 138536 TAAAATAAGAATAATAAAGCTCTCCGCCCATTTCATGGGGACTGAACAAAGTAATGTAAT 138595 |||| | | || ||||| || || ||| || ||| || ||||| |||||||| | Sbjct 523 CAAAAAATGCATCGTAAAGGCCTG-GCACAT--CAGAGGGGCTAAACAAGGTAATGTAGT 467 Query 138596 CGTTCTTTCCAAAACGTTCCATCATCAAATCATTCAGTTGAACACCATAATCCATATGAC 138655 ||| || ||||| ||| | | ||| | || || || ||||| | ||||| Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407 Query 138656 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCA 138715 | | |||||| || || || || ||||||||| | || | || ||||| ||||| | Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347 Query 138716 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCA 138773 ||||||||| || || | ||| || || ||||||||||| | || || || || || Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289 Query 138774 TGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 138833 |||||| || || ||||| || || ||||||||||| ||| |||||| |||| Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229 Query 138834 ACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACCAACGTTAATACCAATTCCAGC 138893 || ||| ||| | ||| |||||||| ||| ||||||| ||||| || || Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169 Query 138894 GCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTATTGATAGACTTTAATGAATC 138953 |||| || | |||| |||||||| || || | || || || | | || Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTC 109 Query 138954 ACCTGCCTCAATAACAACGCATGAACTAAACTGCCGGGTTGGAGTACGGCAACCAGCCAT 139013 || ||| || | || || || |||||||| || ||||| ||||| ||| ||||| Sbjct 108 GCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCAT 49 Query 139014 AATAGGAGTTGGCAATGAAAT 139034 ||| || || || | |||||| Sbjct 48 AATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 143 bits (158), Expect = 3e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 61087 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61146 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 61147 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61206 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 61207 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61266 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 61267 CTTC 61270 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 109 bits (120), Expect = 6e-19 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 138634 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCA-A 138692 || || || |||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 138693 AACAAGAA-GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGC 138751 | ||| || || |||||||| |||||||| | || ||| | || || || |||| Sbjct 288 ACCAATAATGA--CTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGC 345 Query 138752 CACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAA 138811 |||| | || || |||||||| ||||||||||||| || || |||| | || || | Sbjct 346 CACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGA 405 Query 138812 TAACACCAGTATG 138824 || ||| ||||| Sbjct 406 TACAACCCGTATG 418 >seq487923 Length=1072 Score = 107 bits (118), Expect = 2e-18 Identities = 150/202 (74%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 23449 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23508 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 23509 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 23565 ||||| ||||||| || || || | | ||| | ||| ||||||||||| | |||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415 Query 23566 GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAATCAAATTGCATGG 23625 | || |||||||||| || ||||||||||| ||| |||| | ||| ||| || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 23626 ATGGACGAGTATAAATCATGAT 23647 | || | |||||||||||| || Sbjct 354 AAGGTCTAGTATAAATCATAAT 333 >seq351952 Length=416 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61101 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61160 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 61161 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61220 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 61221 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 61273 | ||||||| || || |||||||| | |||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 69938 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 69995 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 69996 GAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-CCATTATACGATATCCGC 70049 |||| | ||||||||| ||||||| ||||||||||| |||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 >seq510909 Length=431 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 61089 TACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAG 61148 |||| ||| | |||||| ||||||| || ||||| ||||||| || ||||| || | Sbjct 339 TACATACTTTTAGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCA 398 Query 61149 TTAAAGCGAACTGCATAACCGGATACACGGAT 61180 ||||||||||| |||||||| |||||||| || Sbjct 399 TTAAAGCGAACGGCATAACCCGATACACGAAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529020406447040