Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019514.1 Length=74669 Score E Sequences producing significant alignments: (Bits) Value seq184512 131 8e-26 seq516110 102 4e-17 seq514610 93.3 2e-14 seq400345 89.7 2e-13 seq515954 84.2 1e-11 >seq184512 Length=2755 Score = 131 bits (144), Expect = 8e-26 Identities = 708/1119 (63%), Gaps = 42/1119 (4%) Strand=Plus/Plus Query 54388 AACTGTTAAAGCGGAGCTACGGTTTTCACCAGAGCCAGACGCTCAGGGCGCAGAATCAGA 54447 |||| ||| ||| |||| | | || | | || | |||||| | || ||| || | Sbjct 83 AACTATTATAGCTTAGCTGCACTCTTAATAACTGCAATACGCTCTGTACGTAGACCCATA 142 Query 54448 GTACCGTAGTACCACTTGATTGAGCTGAAGCCCATTTCGCCGTATGGGTCATTACGGTCG 54507 ||||| |||| ||||| ||||| |||||||| ||||| || || || |||||||| Sbjct 143 AAGCCGTACCACCATTTGATAGAGCTAAAGCCCATCTCGCCATAAGGATCGTTACGGTCA 202 Query 54508 GCAGTTGCTTCGCCAGGCATCTTGGTAGTGACCTTGAACTTCAGGGTCTTACCGTCGGTC 54567 |||||| | || ||| | ||| | ||||| | ||||||||| || Sbjct 203 GCAGTTTCAGTACCTGGCTTACGTGTAACAGTTTCAAACTTATTAGACTTACCGTCAGTT 262 Query 54568 TGGAAGCCGATGGTGGTGAACGACTCAGCACCAACGCACAGCATTGGGTAGATGTCGTAC 54627 ||||| || || || || || || ||| |||| || || | |||| | | |||||| Sbjct 263 TGGAAACCAATAGTAGTAAATGATTCATCACCTACAATAAGAAGTGGGAATACATCGTAC 322 Query 54628 TTACCATTGGTCTCACGGTAACCAGGGT-TGGT-TCCCACAGTGGCGCCAGCGCCAGCCC 54685 |||| | || | | || | | || ||| | || ||||| | || | || Sbjct 323 TTACTACCTGTTGAATGATAGGCTGCGTCTGGAGTACCT-----GCGCCCACACCTGACC 377 Query 54686 AGTGCAGCATCTCTGGAACGACTACCAGACGGAACTGGTCAACAGTACCGATTTCGCCGT 54745 | | ||||| | || || || | | |||||||| ||| || ||| || || | Sbjct 378 ACTTAAGCATATTAGGTACAACAATGAAACGGAACTCACCAATAGCACCACGCTCACCTT 437 Query 54746 TCAGGA---TAGTACCTGCATCTGCATACTGATGAACCGGTACGAAGGCAGCATTGCCAA 54802 | || | |||||||||| |||||| |||| ||| || | ||| ||| | ||| Sbjct 438 TAAGAAGAGTAGTACCTGC---TGCATATTGATTAACGGGAATGAATGCACGTTCACCAT 494 Query 54803 ACGGGTCAACCAGCTTACGAATCAGAG---GAATCAGCTCGGAGCCAATGTACAGAACAC 54859 ||| || || | | |||| |||||| ||| || ||| |||| |||| Sbjct 495 GTAAGTCTTTCA--TTGCTTCT-AGAGTATGAATCATCTCTGAACCACAATACACTACAC 551 Query 54860 GGCCGGCACTGATAGTGCGGGTGTCAATCATACGGCTACCGGTGATAACTTTGGTCTGCT 54919 | | ||| ||||| ||| ||||| |||| |||| || |||| ||||| || | Sbjct 552 GACACGCAGGAATAGTCTTGGTATCAATATTACGAGTACCAGTAATAATCTTGGTTTGTT 611 Query 54920 TCGGAGTGCGGTTTTCGTCCAGCGTGATAGACAGACGCATCAGGTCGTCGTAATCAACAA 54979 | || || ||||| | ||| || | ||||| | |||||| ||||| ||| || Sbjct 612 TAGGTGTACGGTTATTGTCTAGAGAGATAGCTACACGCATAAGGTCTGAATAAGTAAGCT 671 Query 54980 CAGAAGGAGTAGCACCTTCGCCGGTGATTTCGCTGTCCTGAGTTGCAGCGCCGGTGTAAA 55039 |||| | ||| | | | | || | || || |||| || |||||| Sbjct 672 CAGAGGTCTTAG-----TTACAGTAGCGTTAG------TG-GTAGCAGTACCAGTGTAAT 719 Query 55040 CGATGGTGCCAGCACCAGCCAACAGGTCTTTCTGCAGAACCGCTTCGGTCAACTGCACTG 55099 | ||||| || || || || || |||| || | |||| || | |||| | Sbjct 720 ATACAGTGCCTGCGTGAGTTAATAGATCAATCTGTAGGGCATCTTCAGTTACTTGCATGG 779 Query 55100 CACCGTTCATCAGCTCGGTAGAGATGTGGCTGAACAGCTCAGAGTCAGAATCGAAGTCCA 55159 | || |||| ||||| |||||| || || |||| ||||| || |||| || Sbjct 780 CGCCAGTCATAAGCTCACGCATGATGTGTTCTAATAGATCAGCATCAGAGTCAAAGTTCA 839 Query 55160 GGCTTTCCTGAGAGAACTCAGTGAAGAAGCCGAACTTTTGAATGCGGCCAACACGAGAGA 55219 || | ||| | ||||| || | || ||||| | || || || Sbjct 840 TTAGATCTTTAGACCATTCAGTAAACATACCAAACTTCTCAAACGTACCTTCAATCTCTT 899 Query 55220 TACGGCTGAAGCCAACACGGTTCACACGGCCACCGGTTTCAGTCAGCGTTGGGATTTTAC 55279 |||| |||| ||||||||||| ||||| ||||| |||||| || || | ||||| Sbjct 900 TACGTTTGAAACCAACACGGTTAACACGACCACCAGTTTCACCAAGTAAAGGAAGTTTAC 959 Query 55280 CAACGATGGTGCCGATGTCTTT---GCTTGAACCATACAGGTTCCCGTTAACGATGGTT- 55335 | || || |||||||| ||| ||| || | ||| || ||||| | ||| Sbjct 960 CTGGAATCAAACCAATGTCTTTAGAGCT---ACCGTATAAGTTACCATTAAC--TAGTTC 1014 Query 55336 -GCGCCTGCAGCATCGATACCCTGGTCGTTTACGTTACGGTCATCCAGCAGTGGGATGTA 55394 |||||||| ||||| |||||||| ||||| | |||| |||||| |||| || | || Sbjct 1015 AGCGCCTGCTGCATCAATACCCTGATCGTTAATGTTAGCGTCATCTAGCA-AGGTAGATA 1073 Query 55395 GTGGTAAACGCGGATTTCTTTGCCGTAGTTCTTAGGCATAGAAACAACGTCTGCCAGCGG 55454 ||||| ||| || | || ||||||||||||| | | || || || | | | Sbjct 1074 ATGGTACTGCTTAATTACTGTACCTGAGTTCTTAGGCATGGTACGTACATCAGCTAACTG 1133 Query 55455 CATAAAGTATTGGTCTTTACGCGCTTCAATGAGAGCTTT 55493 |||||| || || | ||| |||||||| | ||||| Sbjct 1134 ACCAAAGTACTGTTCATGACGGGCTTCAATTAACGCTTT 1172 >seq516110 Length=283 Score = 102 bits (112), Expect = 4e-17 Identities = 177/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 55228 AAGCCAACACGGTTCACACGGCCACCGGTTTCAGTCAGCGTTGGGATTTTACCAACGATG 55287 |||||||||||||| ||||| ||||| ||||| | || | || || ||| || ||| Sbjct 255 AAGCCAACACGGTTAACACGACCACCTGTTTCTGATAGAGCAGGCATCTTAGCAGGGATA 196 Query 55288 GTGCCGATGTCTTTGCTTGAACCATACAGGTTCCCGTTAACGATGGTTGCGCCTGCAGCA 55347 | || || || || ||||| || || ||||| ||||| ||| | || || | ||| Sbjct 195 GAACCAATATCCTTACTTGAGCCGTATAGGTTACCGTTTACGGTTTCAGCACCAGTGGCA 136 Query 55348 TCGATACCCTGGTCGTTTACGTTACGGTCATCCAGCAGTGGGATGTAGTGGTAAACGCGG 55407 || | ||||| ||||| | || ||||||| ||||| | ||||||| | ||| Sbjct 135 TCCAAGCCCTGATCGTTAATATTGGCATCATCCAATAGTGGTAGATAGTGGT-ATCGCTT 77 Query 55408 ATTTC-TTTGCCGTAGTTCTTAGGCATAGAAACAACGTCTGCCAGCGGCATAAAGTATTG 55466 | | | | || |||| ||||||||||| || || || ||| | ||||||||| Sbjct 76 AATACGAGTACCAGAGTTTTTAGGCATAGAGGTCACATCAGCTAGCTGACCAAAGTATTG 17 Query 55467 GTCTTTACGCGCTTC 55481 |||| ||| ||||| Sbjct 16 CTCTTCACGAGCTTC 2 >seq514610 Length=413 Score = 93.3 bits (102), Expect = 2e-14 Identities = 143/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 25972 TATGCCAAGGTCATCAAACAGATGTTTAAG-GCTCCGCCTGGATGGTTGTTTATCGGT-C 26029 ||||| ||| |||||||| | ||||| || || || ||||||||| || | || | Sbjct 69 TATGCAAAGCACATCAAAC-GCTGTTTTAGAGCGCCAGATGGATGGTTCTTAGTTGGGGC 127 Query 26030 TGGATTATTCCTCTCTGGAGGACAGAATCTCAGCCCTAACAACCAAAGACCCGAACAAGC 26089 |||| | |||| | ||||| |||||||| || ||||||||||| ||||| || || Sbjct 128 TGGACTTCGCCTCGTTAGAGGATAGAATCTCTGCACTAACAACCAAGGACCCCAATAAAT 187 Query 26090 TGAAGGTGTATACCGATGGCTATGACGGTCACTGCCTGCGGGCACATGCTTACTTCGGTG 26149 | || || || || ||||||||||| || || ||| | || ||| ||| || || Sbjct 188 TAAAAGTTTACACAGATGGCTATGATGGCCATTGCTTACGAGCATTCAGTTATTTTGGGC 247 Query 26150 AGCACATGCCGGACATCGAC 26169 | || ||||| || || ||| Sbjct 248 AACATATGCCTGATATTGAC 267 >seq400345 Length=893 Score = 89.7 bits (98), Expect = 2e-13 Identities = 265/405 (65%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 54565 GTCTGGAAGCCGATGGTGGTGAACGACTCAGCACCAACGCACAGCATTGGGTAGATGTCG 54624 |||||||| || || || ||||||||| |||||| ||||||||| | | ||| Sbjct 826 GTCTGGAAACCAATTGTACTGAACGACTTCTCACCAATAACAAGCATTGGGAATACATCG 767 Query 54625 TACTTACCATTGGTCTCACGGTAACCAGGGTTGGTTCCCACAGTGGCGCCAGCGCCAGCC 54684 ||||||||| || ||||||||||| ||| | |||| |||||||| |||||| Sbjct 766 TACTTACCACCAGTTTCACGGTAACCTTCGTTAGCAGTAACAGCAGCGCCAGCACCAGCC 707 Query 54685 CAGTGCAGCATCTCTGGAACGACTACCAGACGGAACTGGTCAACAGTACCGATTTCGCCG 54744 || |||| ||| || || || || | | ||| || ||||| || ||||| || Sbjct 706 CAATGCATCATTTCAGGTACAACGATGAACTTGAATTGATCAACTTGGCCAATTTCACCT 647 Query 54745 TTCAGGATAGTACCTGCATCTGCATACTGATGAACCGGTACGAAGGCAGCATTGCCAAAC 54804 | || |||||| || | || |||| | ||| | | || || || ||| | Sbjct 646 GTAGCGACAGTACCACCAGCAGCGTACTTTTCAACAGAGATAAACGCTTTATCACCATGC 587 Query 54805 GGGTCAACCA---GCTTACGAATCAGAGGAATCAGCTCGGAGCCAATGTACAGAACACGG 54861 ||| || |||| || || ||| || ||||| || || |||| | | ||| Sbjct 586 TCGTCTTTCATACGCTT---AACCATAGGGATAAGCTCTGAACCGATGTGGATATAACGA 530 Query 54862 CCGGCACTGATAGTGCGGGTGTCAATCATACGGCTACCGGTGA-TAACTTTGGTCTGCTT 54920 | || | | ||| || || |||| | ||||||||| |||| || | ||||| Sbjct 529 GCCGCGTTAACAGTCTTAGTATCCGTCATCTGCGTACCGGTGATTAACGTT-GAATGCTT 471 Query 54921 CGGAGTGCGGTTTTCGTCCAGCGTGATAGACAGACGCATCAGGTC 54965 ||| |||||||| || ||| ||| |||||||| ||||| Sbjct 470 AGGACAACGGTTTTCATCAAGCTCAATACTTAGACGCATAAGGTC 426 >seq515954 Length=319 Score = 84.2 bits (92), Expect = 1e-11 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 25962 CGGCAGCAAGTATGCCAAGGTCATCAAACAGATGTTTAAG-GCTCCGCCTGGATGGTTGT 26020 ||||| | |||||| ||| || |||| | ||| ||| || |||||||| ||||||| Sbjct 166 CGGCACAACGTATGCTAAGCATATTAAAC-GTTGTATAAAAGCCCCGCCTGGTTGGTTGT 108 Query 26021 TTATCGGTCTGGATTATTCCTCTCTGGAGGACAGAATCTCAGCCCTAACAACCAAAGACC 26080 | ||| |||||| | | || | ||||||||||| || | || || | ||| | Sbjct 107 GGGTAGGTGTGGATTTTGCTTCATTAGAGGACAGAATAAGTGCATTGACTACTAGAGATC 48 Query 26081 CGAACAAGCTGAAGGTGTATACCGATGGCTATGACGGTCACTGCCTGCG 26129 | | ||||| ||||||||||||||||| ||||| ||||||| || || Sbjct 47 CAGAAAAGCTAAAGGTGTATACCGATGG-TATGA-TGTCACTGTCTTCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237286489643860