Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq449735 187 4e-42 seq494957 98.7 1e-15 seq128994 87.8 3e-12 seq458811 84.2 3e-11 >seq449735 Length=3187 Score = 187 bits (206), Expect = 4e-42 Identities = 306/438 (70%), Gaps = 10/438 (2%) Strand=Plus/Minus Query 119880 AGCTTATTGATATGCACACTGTAATCAAGACCCCGGATCCGGGTTTCATCAGTACCCTTG 119939 || ||||| | || || | |||||| | | || | ||| | |||||| || | Sbjct 440 AGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGG 381 Query 119940 TTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGTA 119999 ||||| || | ||| | ||| || || || || |||||||| | ||||| || || Sbjct 380 TTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTT 321 Query 120000 GCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTTG 120059 || | ||||||||||| | | |||||||||||||| |||||||| || || |||||||| Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261 Query 120060 TAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGCA 120119 || || || || || |||||| |||||||| |||||||| | |||| ||| Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201 Query 120120 CGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATA--TAACTAATAATAG 120177 ||||| ||| || ||||| ||||| || |||||||| |||| || ||| ||| Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTG--CGATACGTATTTAACAAT-- 145 Query 120178 ATGCAGAC---GTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACG 120234 ||||||| || ||||||| || | || ||||| | || ||| ||||||| Sbjct 144 -TGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACG 86 Query 120235 AACTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCT 120294 | ||||| ||||| ||||| || || |||| ||| ||| || || || | |||||| | Sbjct 85 AGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26 Query 120295 TAAATAGAGAAGCCGCAT 120312 |||| | ||| ||||| Sbjct 25 TAAACAATGAAATCGCAT 8 >seq494957 Length=669 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 198933 TTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCG 198992 ||||||||||||||||||||||||||||| ||||||||||||| | |||| | ||||| Sbjct 148 TTGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCCCCAGTTCG 89 Query 198993 AGTCCAGTAGGGGCCACCA 199011 |||| | ||||||||||| Sbjct 88 AGTCTGGGAGGGGCCACCA 70 >seq128994 Length=861 Score = 87.8 bits (96), Expect = 3e-12 Identities = 135/190 (71%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 117804 GCGATTTCTACCATCTCTGGGTCGTCTTTACCGCTTTGC--CAGCGATGAAGGATAGTCT 117861 || |||||| |||| ||||||||||||||||| | ||| ||| | | || || | Sbjct 258 GCAATTTCTCCCATTTCTGGGTCGTCTTTACCACCCTGCATCAGAGCTAAA--ATGTGTT 315 Query 117862 GGGTTGCCTTAAGGTGTACTGCTTCGTCACGGGCGATTAGACGCATGATCTTAGCACTAC 117921 | || || ||||||| ||||| |||||||| |||| || || || |||||| ||| Sbjct 316 GTGTACTATTGAGGTGTAAGGCTTCATCACGGGCAATTAAGCGAATAATTTTAGCATTAC 375 Query 117922 CTTCCATCATCCCAGTGAATTCTGGGAAAGAGAAGTTACAGACAAAACTAACATAGAACC 117981 ||||||| | || ||| | || | || |||| ||||||| |||||||| | Sbjct 376 CTTCCATAA---CACGACGTTCAGCAAAGGCAAACGAACAGGCAAAACTGACATAGAAGC 432 Query 117982 GAATGGCTTC 117991 |||| ||||| Sbjct 433 GAATCGCTTC 442 >seq458811 Length=383 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839 |||| ||||||||||| |||||||||| ||||||||| ||| ||||| ||||||| | Sbjct 318 TCGGCGATTAGCGCAGTTTGGTAGCGCACTTGGTTTGGGTCCAAGGGGTCGCAGGTTCAA 259 Query 199840 GTCCTGTATCACCGACCACtt 199860 ||||| ||| |||||||||| Sbjct 258 ATCCTGCATCGCCGACCACTT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736579184403760