Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_019538.1
Length=231743
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 187 4e-42
seq494957 98.7 1e-15
seq128994 87.8 3e-12
seq458811 84.2 3e-11
>seq449735
Length=3187
Score = 187 bits (206), Expect = 4e-42
Identities = 306/438 (70%), Gaps = 10/438 (2%)
Strand=Plus/Minus
Query 119880 AGCTTATTGATATGCACACTGTAATCAAGACCCCGGATCCGGGTTTCATCAGTACCCTTG 119939
|| ||||| | || || | |||||| | | || | ||| | |||||| || |
Sbjct 440 AGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGG 381
Query 119940 TTATTCTTCAATACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGTA 119999
||||| || | ||| | ||| || || || || |||||||| | ||||| || ||
Sbjct 380 TTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTT 321
Query 120000 GCAGAGCCGCCACGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTTG 120059
|| | ||||||||||| | | |||||||||||||| |||||||| || || ||||||||
Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261
Query 120060 TAGAATGGGATTACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGCA 120119
|| || || || || |||||| |||||||| |||||||| | |||| |||
Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201
Query 120120 CGAATAGCACCAGCATTAATACCAATACCAGCACGTTGACTGATA--TAACTAATAATAG 120177
||||| ||| || ||||| ||||| || |||||||| |||| || ||| |||
Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTG--CGATACGTATTTAACAAT-- 145
Query 120178 ATGCAGAC---GTATCGTTAATAGATTTCAGAGAATCGCCGGATTCAATTTTCACACACG 120234
||||||| || ||||||| || | || ||||| | || ||| |||||||
Sbjct 144 -TGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACG 86
Query 120235 AACTAAATTGGCGCGTTGGGGTGCGGGCACCACCCAAAATAGGGGTTGGGATTGAAATCT 120294
| ||||| ||||| ||||| || || |||| ||| ||| || || || | |||||| |
Sbjct 85 AGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTT 26
Query 120295 TAAATAGAGAAGCCGCAT 120312
|||| | ||| |||||
Sbjct 25 TAAACAATGAAATCGCAT 8
>seq494957
Length=669
Score = 98.7 bits (108), Expect = 1e-15
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 198933 TTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCG 198992
||||||||||||||||||||||||||||| ||||||||||||| | |||| | |||||
Sbjct 148 TTGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCCCCAGTTCG 89
Query 198993 AGTCCAGTAGGGGCCACCA 199011
|||| | |||||||||||
Sbjct 88 AGTCTGGGAGGGGCCACCA 70
>seq128994
Length=861
Score = 87.8 bits (96), Expect = 3e-12
Identities = 135/190 (71%), Gaps = 7/190 (4%)
Strand=Plus/Plus
Query 117804 GCGATTTCTACCATCTCTGGGTCGTCTTTACCGCTTTGC--CAGCGATGAAGGATAGTCT 117861
|| |||||| |||| ||||||||||||||||| | ||| ||| | | || || |
Sbjct 258 GCAATTTCTCCCATTTCTGGGTCGTCTTTACCACCCTGCATCAGAGCTAAA--ATGTGTT 315
Query 117862 GGGTTGCCTTAAGGTGTACTGCTTCGTCACGGGCGATTAGACGCATGATCTTAGCACTAC 117921
| || || ||||||| ||||| |||||||| |||| || || || |||||| |||
Sbjct 316 GTGTACTATTGAGGTGTAAGGCTTCATCACGGGCAATTAAGCGAATAATTTTAGCATTAC 375
Query 117922 CTTCCATCATCCCAGTGAATTCTGGGAAAGAGAAGTTACAGACAAAACTAACATAGAACC 117981
||||||| | || ||| | || | || |||| ||||||| |||||||| |
Sbjct 376 CTTCCATAA---CACGACGTTCAGCAAAGGCAAACGAACAGGCAAAACTGACATAGAAGC 432
Query 117982 GAATGGCTTC 117991
|||| |||||
Sbjct 433 GAATCGCTTC 442
>seq458811
Length=383
Score = 84.2 bits (92), Expect = 3e-11
Identities = 68/81 (84%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 199781 TCGGTGATTAGCGCAG-TTGGTAGCGCGTCTGGTTTGGGACCAGAGGGTCACAGGTTCGA 199839
|||| ||||||||||| |||||||||| ||||||||| ||| ||||| ||||||| |
Sbjct 318 TCGGCGATTAGCGCAGTTTGGTAGCGCACTTGGTTTGGGTCCAAGGGGTCGCAGGTTCAA 259
Query 199840 GTCCTGTATCACCGACCACtt 199860
||||| ||| ||||||||||
Sbjct 258 ATCCTGCATCGCCGACCACTT 238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 736579184403760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |