Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_019713.1
Length=78751
Score E
Sequences producing significant alignments: (Bits) Value
seq427934 206 1e-48
seq484804 132 2e-26
seq155978 118 5e-22
>seq427934
Length=2050
Score = 206 bits (228), Expect = 1e-48
Identities = 489/735 (67%), Gaps = 3/735 (0%)
Strand=Plus/Plus
Query 52884 ACAACCAACTACCCTTAGTAACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAAC 52943
|||| ||| | || ||||| || || || || ||||||||||| | || |||||||
Sbjct 809 ACAATCAATTTCCTTTAGTGACCACACGTAAAAGCTTCTGGAAGTCTGCCATAGCCGAGA 868
Query 52944 TGCTTGGGTACATTCGTGGATACAGCAGTGCCGAAGATTTCCGAAAGCTGGGAACCACCA 53003
| | || || | ||||| ||| | ||| | ||||| || | || || | |
Sbjct 869 TCTTAGGATATTTACGTGGCTACCAAAATGCGGCCGATTTTAGAGCTTTAGGCACTAAAA 928
Query 53004 CTTGGGACGCTAACGCCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCA 53063
| |||||||| |||||||| | || |||| ||||| ||||||| | || ||
Sbjct 929 CATGGGACGCCAACGCCAATGAAAACCAAGCATGGCTAGATAACCCAAATCGTAAAGGTC 988
Query 53064 ATGACCACATGGGGCGTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCG 53123
||| | ||||||| | ||||| | | || || | | | ||||| ||||| |
Sbjct 989 CTGATGATATGGGGCTGATATACGGGGCGTTAGGGCGTGCATTTCCAAAGCCTGATGGTG 1048
Query 53124 GTACTGTGGACCAGCT-CAAGAAGATTGTGGATAATCTTACTAACGGTATCGACGACCGT 53182
|| ||| || || ||| || || || || | || | ||| ||||| || ||||
Sbjct 1049 GTCATGTCGATTTACTGCAACAA-ATCGTCGACGACCTCAGTAATGGTATAGATAACCGC 1107
Query 53183 GGGGAGATCCTGAACTTCTACAACCCGGGCGAGTTCCACATGGGATGCCTACGCCCGTGC 53242
|| ||||| | | ||||| | || || | || || | || ||| | || || ||
Sbjct 1108 GGTGAGATTTTAACCTTCTTTCATCCTGGAGCATTTGACTTAGGTTGCTTGCGACCATGT 1167
Query 53243 ATGTACAGCCACCACTTCTCACTGCTAGGAGACACCCTGTATCTCAACAGCACACAACGC 53302
|||||| ||||| || ||| | || || || || |||| |||||||||||||| |||
Sbjct 1168 ATGTACGAACACCATTTTTCATTACTCGGTGATACTTTGTACCTCAACAGCACACAGCGC 1227
Query 53303 TCTTGTGATGTACCTTTGGGTCTGAACTTCAACATGGTTCAGGTGTACGTGTTCCTAGCG 53362
||||||||| || | || | |||||||||||||| || || || || || || |||
Sbjct 1228 AGTTGTGATGTTCCGCTAGGGTTAAACTTCAACATGGTACAAGTATATGTATTACTTGCG 1287
Query 53363 ATCATGGCTCAAATCACCGGGCACAAGATGGGCACCGCGCACCACAAGATCGTGAACGCT 53422
| ||||| || || || || || || || | || |||| ||||| || || |||
Sbjct 1288 TTAATGGCCCAGATTACTGGCCATAAACCTGGTAAGGCATACCATAAGATAGTCAATGCT 1347
Query 53423 CATATCTACGAAGACCAGATAGATCTCATGCGCGACGTACAGTTAACCCGAGAGCCG-CT 53481
||||| ||||||||||| | || | |||||| || || ||| | | || || ||| |
Sbjct 1348 CATATTTACGAAGACCAACTTGAACCCATGCGGGATGTCCAGCTCGCGCGCGAACCGTTT 1407
Query 53482 AGACCCACCCGTGTTGTGGATCAACCCGGACATCAAGACACTAGAAGACTTGGAGACTTG 53541
| | || | | ||||| || | || || || ||| ||||| | || |||||
Sbjct 1408 TGCATCGCCTAAGCTAATCATCAATCCAAAAATTAAAACCCTAAAAGACATCGAAACTTG 1467
Query 53542 GGTAACACTGGACGACTTTGATGTCTTTGGCTACAAACACCATGATCCAATAAAATATCC 53601
|||||| |||| |||||| || | || |||| || ||| | || ||||| ||
Sbjct 1468 GGTAACCTTGGATGACTTTAGCGTTGAAGATTATCAACATCACGATGCGATTAAATACCC 1527
Query 53602 ATTCACTGTTTAGTA 53616
||| | || || ||
Sbjct 1528 TTTCGCAGTGTAATA 1542
>seq484804
Length=980
Score = 132 bits (146), Expect = 2e-26
Identities = 187/263 (71%), Gaps = 0/263 (0%)
Strand=Plus/Minus
Query 52895 CCCTTAGTAACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAACTGCTTGGGTAC 52954
|| ||| |||| || || |||||||| | || |||| | || || | |||| ||
Sbjct 305 CCATTAATAACTACGCGTAAGAGCTTTTTCAAGTCAGCGATTGCTGAGTTTATTGGTTAT 246
Query 52955 ATTCGTGGATACAGCAGTGCCGAAGATTTCCGAAAGCTGGGAACCACCACTTGGGACGCT 53014
|| ||||| || || ||||| ||||| || || || || || | || ||||| |||
Sbjct 245 ATCCGTGGTTATGACAATGCCGCTGATTTTCGTAAACTAGGTACTAAAACCTGGGATGCT 186
Query 53015 AACGCCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCAATGACCACATG 53074
|| ||||| ||||| ||||||||||||||| ||||| || | || | |||
Sbjct 185 AATGCCAATTTAAATGATGCTTGGCTTAATAACATTCACCGCAAAGGTGAAGATGATATG 126
Query 53075 GGGCGTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCGGTACTGTGGAC 53134
||||| |||||||| | || || || | ||||||||||| ||||| |||| | |||
Sbjct 125 GGGCGCGTTTACGGGATTCAAGGCCGTGCATGGGCTAAGCCTGATGGTGGTAGCATTGAC 66
Query 53135 CAGCTCAAGAAGATTGTGGATAA 53157
||||| || || ||||| |||||
Sbjct 65 CAGCTGAAAAAAATTGTTGATAA 43
>seq155978
Length=1540
Score = 118 bits (130), Expect = 5e-22
Identities = 263/388 (68%), Gaps = 14/388 (4%)
Strand=Plus/Plus
Query 52904 ACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAACTGCTTGGGTACATTCGTGGA 52963
|| || || || |||| | ||||||||| | |||||| | || || ||| | |||||
Sbjct 1099 ACCACACGTAAAAGCTATTACAAAGCAGCTATTGCCGAATTACTCGGTTACTTGCGTGGC 1158
Query 52964 TACAGCAGTGCCGAAGA-TTTC-CGAAA---GCTGGGAACCACCACTTGGGACGCTAACG 53018
||| || || | | | |||| ||||| |||| || || ||||| || ||||
Sbjct 1159 TACGATAGCGCGGCACAGTTTCGCGAAATAGGCTGTAAA-----ACCTGGGATGCAAACG 1213
Query 53019 CCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCAATGACCACATGGGGC 53078
| ||| | ||| |||||||||||||| ||| |||| || | ||| ||||||| |
Sbjct 1214 CAAACGAAAATAGCGCTTGGCTTAATAATCCGCACCGTAAAGGTGAGGACGACATGGGCC 1273
Query 53079 GTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCGGTACTGTGGACCAGC 53138
||||||| || || || || || ||||| || |||||| || | ||||| |
Sbjct 1274 GTGTTTATGGCGTACAAGGGCGTGCTTGGCAGCGCCCAGATGGCTCAACGCTAGACCAAC 1333
Query 53139 T--CAAGAAGATTGTGGATAATCTTACTAACGGTATCGACGACCGTGGGGAGATCCTGAA 53196
| ||| ||| | | |||| | | || ||||| ||||| || || || || | |
Sbjct 1334 TAGCAA-AAG-TAATTAATAACTTAAAAAATGGTATAGACGATCGCGGTGAAATAATTAG 1391
Query 53197 CTTCTACAACCCGGGCGAGTTCCACATGGGATGCCTACGCCCGTGCATGTACAGCCACCA 53256
|| |||||||| ||||| || | | || || |||||||||||||| ||| |||
Sbjct 1392 TTTTTACAACCCAGGCGAATTTGAGCTTGGCTGTTTACGCCCGTGCATGCACACGCACAC 1451
Query 53257 CTTCTCACTGCTAGGAGACACCCTGTAT 53284
|| ||| | |||| ||||| || |||
Sbjct 1452 GTTTTCATTATTAGGTGACACACTTTAT 1479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 250265230776464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |