Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019713.1 Length=78751 Score E Sequences producing significant alignments: (Bits) Value seq427934 206 1e-48 seq484804 132 2e-26 seq155978 118 5e-22 >seq427934 Length=2050 Score = 206 bits (228), Expect = 1e-48 Identities = 489/735 (67%), Gaps = 3/735 (0%) Strand=Plus/Plus Query 52884 ACAACCAACTACCCTTAGTAACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAAC 52943 |||| ||| | || ||||| || || || || ||||||||||| | || ||||||| Sbjct 809 ACAATCAATTTCCTTTAGTGACCACACGTAAAAGCTTCTGGAAGTCTGCCATAGCCGAGA 868 Query 52944 TGCTTGGGTACATTCGTGGATACAGCAGTGCCGAAGATTTCCGAAAGCTGGGAACCACCA 53003 | | || || | ||||| ||| | ||| | ||||| || | || || | | Sbjct 869 TCTTAGGATATTTACGTGGCTACCAAAATGCGGCCGATTTTAGAGCTTTAGGCACTAAAA 928 Query 53004 CTTGGGACGCTAACGCCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCA 53063 | |||||||| |||||||| | || |||| ||||| ||||||| | || || Sbjct 929 CATGGGACGCCAACGCCAATGAAAACCAAGCATGGCTAGATAACCCAAATCGTAAAGGTC 988 Query 53064 ATGACCACATGGGGCGTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCG 53123 ||| | ||||||| | ||||| | | || || | | | ||||| ||||| | Sbjct 989 CTGATGATATGGGGCTGATATACGGGGCGTTAGGGCGTGCATTTCCAAAGCCTGATGGTG 1048 Query 53124 GTACTGTGGACCAGCT-CAAGAAGATTGTGGATAATCTTACTAACGGTATCGACGACCGT 53182 || ||| || || ||| || || || || | || | ||| ||||| || |||| Sbjct 1049 GTCATGTCGATTTACTGCAACAA-ATCGTCGACGACCTCAGTAATGGTATAGATAACCGC 1107 Query 53183 GGGGAGATCCTGAACTTCTACAACCCGGGCGAGTTCCACATGGGATGCCTACGCCCGTGC 53242 || ||||| | | ||||| | || || | || || | || ||| | || || || Sbjct 1108 GGTGAGATTTTAACCTTCTTTCATCCTGGAGCATTTGACTTAGGTTGCTTGCGACCATGT 1167 Query 53243 ATGTACAGCCACCACTTCTCACTGCTAGGAGACACCCTGTATCTCAACAGCACACAACGC 53302 |||||| ||||| || ||| | || || || || |||| |||||||||||||| ||| Sbjct 1168 ATGTACGAACACCATTTTTCATTACTCGGTGATACTTTGTACCTCAACAGCACACAGCGC 1227 Query 53303 TCTTGTGATGTACCTTTGGGTCTGAACTTCAACATGGTTCAGGTGTACGTGTTCCTAGCG 53362 ||||||||| || | || | |||||||||||||| || || || || || || ||| Sbjct 1228 AGTTGTGATGTTCCGCTAGGGTTAAACTTCAACATGGTACAAGTATATGTATTACTTGCG 1287 Query 53363 ATCATGGCTCAAATCACCGGGCACAAGATGGGCACCGCGCACCACAAGATCGTGAACGCT 53422 | ||||| || || || || || || || | || |||| ||||| || || ||| Sbjct 1288 TTAATGGCCCAGATTACTGGCCATAAACCTGGTAAGGCATACCATAAGATAGTCAATGCT 1347 Query 53423 CATATCTACGAAGACCAGATAGATCTCATGCGCGACGTACAGTTAACCCGAGAGCCG-CT 53481 ||||| ||||||||||| | || | |||||| || || ||| | | || || ||| | Sbjct 1348 CATATTTACGAAGACCAACTTGAACCCATGCGGGATGTCCAGCTCGCGCGCGAACCGTTT 1407 Query 53482 AGACCCACCCGTGTTGTGGATCAACCCGGACATCAAGACACTAGAAGACTTGGAGACTTG 53541 | | || | | ||||| || | || || || ||| ||||| | || ||||| Sbjct 1408 TGCATCGCCTAAGCTAATCATCAATCCAAAAATTAAAACCCTAAAAGACATCGAAACTTG 1467 Query 53542 GGTAACACTGGACGACTTTGATGTCTTTGGCTACAAACACCATGATCCAATAAAATATCC 53601 |||||| |||| |||||| || | || |||| || ||| | || ||||| || Sbjct 1468 GGTAACCTTGGATGACTTTAGCGTTGAAGATTATCAACATCACGATGCGATTAAATACCC 1527 Query 53602 ATTCACTGTTTAGTA 53616 ||| | || || || Sbjct 1528 TTTCGCAGTGTAATA 1542 >seq484804 Length=980 Score = 132 bits (146), Expect = 2e-26 Identities = 187/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 52895 CCCTTAGTAACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAACTGCTTGGGTAC 52954 || ||| |||| || || |||||||| | || |||| | || || | |||| || Sbjct 305 CCATTAATAACTACGCGTAAGAGCTTTTTCAAGTCAGCGATTGCTGAGTTTATTGGTTAT 246 Query 52955 ATTCGTGGATACAGCAGTGCCGAAGATTTCCGAAAGCTGGGAACCACCACTTGGGACGCT 53014 || ||||| || || ||||| ||||| || || || || || | || ||||| ||| Sbjct 245 ATCCGTGGTTATGACAATGCCGCTGATTTTCGTAAACTAGGTACTAAAACCTGGGATGCT 186 Query 53015 AACGCCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCAATGACCACATG 53074 || ||||| ||||| ||||||||||||||| ||||| || | || | ||| Sbjct 185 AATGCCAATTTAAATGATGCTTGGCTTAATAACATTCACCGCAAAGGTGAAGATGATATG 126 Query 53075 GGGCGTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCGGTACTGTGGAC 53134 ||||| |||||||| | || || || | ||||||||||| ||||| |||| | ||| Sbjct 125 GGGCGCGTTTACGGGATTCAAGGCCGTGCATGGGCTAAGCCTGATGGTGGTAGCATTGAC 66 Query 53135 CAGCTCAAGAAGATTGTGGATAA 53157 ||||| || || ||||| ||||| Sbjct 65 CAGCTGAAAAAAATTGTTGATAA 43 >seq155978 Length=1540 Score = 118 bits (130), Expect = 5e-22 Identities = 263/388 (68%), Gaps = 14/388 (4%) Strand=Plus/Plus Query 52904 ACAACCCGCAAGAGCTTCTGGAAAGCAGCTGTAGCCGAACTGCTTGGGTACATTCGTGGA 52963 || || || || |||| | ||||||||| | |||||| | || || ||| | ||||| Sbjct 1099 ACCACACGTAAAAGCTATTACAAAGCAGCTATTGCCGAATTACTCGGTTACTTGCGTGGC 1158 Query 52964 TACAGCAGTGCCGAAGA-TTTC-CGAAA---GCTGGGAACCACCACTTGGGACGCTAACG 53018 ||| || || | | | |||| ||||| |||| || || ||||| || |||| Sbjct 1159 TACGATAGCGCGGCACAGTTTCGCGAAATAGGCTGTAAA-----ACCTGGGATGCAAACG 1213 Query 53019 CCAACAAGAATGAAGCTTGGCTTAATAACCCGTACCGCGTGGGCAATGACCACATGGGGC 53078 | ||| | ||| |||||||||||||| ||| |||| || | ||| ||||||| | Sbjct 1214 CAAACGAAAATAGCGCTTGGCTTAATAATCCGCACCGTAAAGGTGAGGACGACATGGGCC 1273 Query 53079 GTGTTTACGGTGTGCAGGGACGATCTTGGGCTAAGCCGGATGGCGGTACTGTGGACCAGC 53138 ||||||| || || || || || ||||| || |||||| || | ||||| | Sbjct 1274 GTGTTTATGGCGTACAAGGGCGTGCTTGGCAGCGCCCAGATGGCTCAACGCTAGACCAAC 1333 Query 53139 T--CAAGAAGATTGTGGATAATCTTACTAACGGTATCGACGACCGTGGGGAGATCCTGAA 53196 | ||| ||| | | |||| | | || ||||| ||||| || || || || | | Sbjct 1334 TAGCAA-AAG-TAATTAATAACTTAAAAAATGGTATAGACGATCGCGGTGAAATAATTAG 1391 Query 53197 CTTCTACAACCCGGGCGAGTTCCACATGGGATGCCTACGCCCGTGCATGTACAGCCACCA 53256 || |||||||| ||||| || | | || || |||||||||||||| ||| ||| Sbjct 1392 TTTTTACAACCCAGGCGAATTTGAGCTTGGCTGTTTACGCCCGTGCATGCACACGCACAC 1451 Query 53257 CTTCTCACTGCTAGGAGACACCCTGTAT 53284 || ||| | |||| ||||| || ||| Sbjct 1452 GTTTTCATTATTAGGTGACACACTTTAT 1479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 250265230776464