Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019926.1 Length=45554 Score E Sequences producing significant alignments: (Bits) Value seq441498 93.3 1e-14 seq494738 89.7 1e-13 >seq441498 Length=539 Score = 93.3 bits (102), Expect = 1e-14 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 39595 GGCCAGCCAACCTGCCCTGAGATGTA---CAATGATGAAGCACTGATTGAGAAGGAGATC 39651 || ||||| ||||||||||| ||||| ||||||| | | ||| ||||||||| | Sbjct 168 GGACAGCCTACCTGCCCTGAAATGTATACCAATGAT--ATC-TTGAATGAGAAGGAATTG 224 Query 39652 TCGCAGGGTACGGCTAAGTTCCAGCTTCAGTTTATGCTGAACACACGACTGTCTGACTCA 39711 | ||||||| ||||||||| ||| ||||||||||| || || |||| | || || Sbjct 225 GCACAGGGTAAAGCTAAGTTCATGCTACAGTTTATGCTTAATACTGGACTTGCAGATGCA 284 Query 39712 GAGAGATTCCCTCTTAAACTTAG 39734 || |||||||| || ||||| || Sbjct 285 GACAGATTCCCACTCAAACTAAG 307 >seq494738 Length=508 Score = 89.7 bits (98), Expect = 1e-13 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 39223 TCGCCATCCGTTGCCTGCTACTCTATTGAGG--GTAGTATGCAGGGTGCGCGTGCCGACC 39280 || ||||||||| | || |||||||| ||| | || | ||||| || ||||| || Sbjct 100 TCTCCATCCGTTCCTTGTTACTCTATCGAGTCAGGAGCA--CAGGGCGCTCGTGCTGATA 157 Query 39281 TTATCATTGCGGATGACGTCGAATCTCTTCAGAACTCAGCTACTGCCGCAGGTCGAGTTA 39340 | || ||||| ||||| | || || | |||||||| | | | || || || | | Sbjct 158 TAATAATTGCAGATGATATTGAGTCCTTACAGAACTCTCGTTCAGTTGCTGGCCGTGA-A 216 Query 39341 AGCTGGAAGAGGCA-ACCAAAGAGTTTGAGTCTATCAACCAAACAGGTGATATTCTCTAC 39399 | | || | ||| ||| |||||| ||||||||||||||| ||| ||||| | ||| Sbjct 217 TGGTTGATGGAGCAGACCTTAGAGTTCGAGTCTATCAACCAATTTGGTCATATTATATAC 276 Query 39400 CTGGGTACGCCTCAGTCAATTAACTCCATCTACAACAACCTACCGTCACGTGGCTACCAG 39459 | || || || ||| | | || ||||||||| || || ||||||||| || Sbjct 277 TTAGGCACACCACAGAGCGTGGAGTCTATCTACAACTGGCTGCCTAGTCGTGGCTACAAG 336 Query 39460 TTGAGAATCTGGCCAGGTCGATATCCCAC 39488 | | |||||| ||||| |||| || || Sbjct 337 GTTCGTATCTGGACAGGTAGATACCCTAC 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144742287536784