Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_020080.1
Length=174413
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 215 6e-51
seq508109 141 1e-28
seq506238 136 4e-27
seq522862 111 2e-19
seq434791 91.5 2e-13
seq494957 82.4 8e-11
seq128994 82.4 8e-11
>seq449735
Length=3187
Score = 215 bits (238), Expect = 6e-51
Identities = 423/621 (68%), Gaps = 12/621 (2%)
Strand=Plus/Plus
Query 40448 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 40507
||| | || ||||| || ||||||||||| ||||| ||||| || || |||||||| |
Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84
Query 40508 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCTGCG 40567
|||||| |||| || | || || |||| ||| ||||||| | |||||
Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144
Query 40568 ATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCA 40627
|| || || || | || |||||||| || ||||| ||||||| || | ||||| |||
Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204
Query 40628 ATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAA 40687
||||| | || || ||| ||||| ||||| ||| |||||||| | ||
Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264
Query 40688 CATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACA 40747
|| ||||||| || |||||| |||||| || || || || ||||| || || |||||
Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324
Query 40748 CTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAA 40807
||| || || | |||||| | ||||| |||||||| | || | || || |||
Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384
Query 40808 GGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATG 40867
|| || || || |||||||| |||||| | ||||| || |||||| |||| | | |||
Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444
Query 40868 TATAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTC---CGGATGTTGCTAAC 40924
|| || ||||| || || |||||||| ||||||| | | |||| ||| |
Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATG-TGCCA-- 501
Query 40925 GATCGTCTGTATGATCTGTTCTATGAAGCTGATCAGACTGCATTTGAAGAACTGTATGAA 40984
| || || ||| || | ||||| | |||| | ||||| | || |||| |
Sbjct 502 ---GGCCTTTACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGTA 555
Query 40985 AGCCTGGAAAAAGATCCAACTGTTCGTAAGAAACGCATCAAAGCGGTTGACCTGTTCCAA 41044
| ||| |||| | | ||||||| |||||||| ||||| |||| |||||| |
Sbjct 556 AAATACGAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCA 615
Query 41045 CTTTTAGCACAGGAACGCGCA 41065
| || || || ||||| |||
Sbjct 616 ATGTTTGCGCAAGAACGTGCA 636
Score = 95.1 bits (104), Expect = 1e-14
Identities = 244/364 (67%), Gaps = 12/364 (3%)
Strand=Plus/Plus
Query 42159 ATCATAACCACTTAGAACAACCTATGTTTTTTGGTGAAGATACTGGT---GTTGCACGTT 42215
|| ||||||| | ||| | || |||||||| || || || | | || | ||||
Sbjct 1794 ATAATAACCAAATGGAAGAGCCAATGTTTTTCGGCCAA---ACCGTTAACGTATCTCGTT 1850
Query 42216 ATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCT 42275
|||| || ||| || |||| |||| || | |||| |||||||| || || |
Sbjct 1851 ATGATCAACAAAAATACCCTATTTTTGAAAAACTAATTGAAAAGCAGCTTTCGTTTTTTT 1910
Query 42276 GGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAAC 42335
|||| || |||||||| || | | ||||| | | | | | | | ||||| |
Sbjct 1911 GGCGCCCAGAAGAAGTAGACGTAAGCAAAGACCGCTTAGACTTTCAAGCATTACCTGATC 1970
Query 42336 ATGAAAAA-ATC-ATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCA 42393
||||||| || ||||| | | ||| || | |||||||| || | |||| | | ||
Sbjct 1971 ATGAAAAGCATATATTTTTAAGT--AACTTAAAATATCAAACATTGCTTGATAGCGTACA 2028
Query 42394 GGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCATGGAAACCT 42452
|| ||| || ||| | || | | || |||| ||| | | ||| | ||||| |
Sbjct 2029 AGGGCGTTCACCAAACGTGGCCCTACTACCTATTGTATCGCTACCAGAGT-TAGAAACAT 2087
Query 42453 GGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAAC 42512
|||| ||||||||||||||||||||||| || || ||||| |||||||||||| |
Sbjct 2088 GGATAGAAACGTGGGCGTTTAGTGAAACGATTCATAGCCGCTCGTACACGCATATTATTC 2147
Query 42513 GTAA 42516
||||
Sbjct 2148 GTAA 2151
>seq508109
Length=334
Score = 141 bits (156), Expect = 1e-28
Identities = 218/308 (71%), Gaps = 6/308 (2%)
Strand=Plus/Minus
Query 89338 CCGCGTCCTTTTTGTTTCAGTCCCAGGAACACGATCGCGTTGACTTCTTTCAGGCGCGGA 89397
||||| || ||||| |||| | | |||||| || || || || | | || ||
Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246
Query 89398 TCATTCTTCACGGCATCAACCACGTTAAACGCATCATCA-TAGGTTTTCGAGC--TAACC 89454
||| | |||| || ||| || || ||||||| ||| ||| | ||| | | | |
Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAG---TACGACCACTGATC 189
Query 89455 ATGAAGTGCAGGTTGATTTGCTGTTGTCCGGCTTCTGTCAGGTTCGCTACCGAGTCGAAA 89514
|| ||||| ||||||||||||| ||| || || | || | ||| || ||| ||
Sbjct 188 ATAAAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAAC 129
Query 89515 GCGACATCAAAGCCAGCGTGTTTATAAACCGATACCGCAACAGCCCCAGCAACCGCCGCT 89574
|| |||||||| ||||||||||||||||| ||||| |||| ||| |||||||| | |||
Sbjct 128 GCTACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCT 69
Query 89575 AAACGCGCTGCAACGTCTTTTGATACATCAGCAATGGTAAGGTTCGGCACAATGCCTTTA 89634
|| || ||||| |||| ||| ||||||||||| || || || || | ||| ||||
Sbjct 68 AATTTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGT 9
Query 89635 GAACGCGC 89642
||||| ||
Sbjct 8 GAACGAGC 1
>seq506238
Length=275
Score = 136 bits (150), Expect = 4e-27
Identities = 134/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 50854 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 50913
|||||||| || ||||||||||| || ||||| || || ||||| | ||||| |||
Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162
Query 50914 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 50973
|||| ||||||||||| ||||| ||||| || ||||| || ||||| ||||||||||||
Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102
Query 50974 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGA 51026
|||||| | || || ||||| || | ||||| | | | || ||||||||
Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49
>seq522862
Length=256
Score = 111 bits (122), Expect = 2e-19
Identities = 178/253 (70%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 42356 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 42415
|| ||||| | |||||||| || ||||| | || ||||| ||| | |||||| | |||
Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61
Query 42416 TTTTTGCCAATTGCATCCG-ATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAG 42474
|| | || || | |||| | |||| | || || ||||||||||| ||| | || ||
Sbjct 62 TTACTTCCGATCGTATCCTTACCTGAGT-TAGAGACATGGATCGAAACCTGGTCCTTCAG 120
Query 42475 TGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAACTTGCACATTGATCCTTC 42534
||| || |||||||||| || ||||| ||||||| |||||| | | ||| || ||
Sbjct 121 TGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAACATATTCGATGACCCGTC 180
Query 42535 TGTACAGTTCGACCAAATCCTTCGCAATGAAGCGATTATGAAACGTTCTGCATCAATGAC 42594
|| | | | || | || | |||||| | ||| |||||| ||||| |||| |
Sbjct 181 TGAAGTGCTAGATGATATTGTCAGCAATGTTGAGATACAGAAACGAGCTGCACCAATCGC 240
Query 42595 ACGGTATTATGAT 42607
| | |||||||||
Sbjct 241 AAGCTATTATGAT 253
>seq434791
Length=745
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 39443 TTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGAT 39502
||||||||| |||| | ||||||||| ||| ||||||||||||| |||
Sbjct 555 TTTCAGTTCTTTGTGGCGGATAATAAACTGTCATGCCAGCTCTATCAGCGTTCAGCAGAT 614
Query 39503 GTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCGCT 39562
| ||| |||| ||||||| || || ||| |||||| || || || ||||| ||||
Sbjct 615 TTATTCCTAGGTGTGCCGTTTAACATTGCCAGCTATGCCCTACTTACCCATATGGTCGCG 674
Query 39563 GATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGATGTCCATATCTAT 39622
| ||||| || |||||||| || | | ||||| ||||||||| ||| || |||
Sbjct 675 CAAATTTGTGGTCTAGAAGTGGGGGAATTCATCTGGACAGGTGGTGATTGCCACATTTAT 734
Query 39623 AAAAA 39627
||||
Sbjct 735 CAAAA 739
>seq494957
Length=669
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/96 (81%), Gaps = 3/96 (3%)
Strand=Plus/Minus
Query 49017 ACAGTTCTAAAAATA-TCGGCCCCTTAGCTCAATAGG-TAGAGCTAATCACTCATAATGG 49074
|||||| || ||| | | |||||||||||||| | || |||||| | ||||||||| |
Sbjct 164 ACAGTTATACAAAAAGTTGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCG 105
Query 49075 TTAGGTTCCCGGTTCAAGTCACGGGAGGGGCCACCA 49110
|||||| ||| |||| |||| ||||||||||||||
Sbjct 104 TTAGGTCCCCAGTTCGAGTC-TGGGAGGGGCCACCA 70
>seq128994
Length=861
Score = 82.4 bits (90), Expect = 8e-11
Identities = 133/189 (70%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 42329 CCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACC 42388
|||||||||||| || |||||| || || | |||| |||||| ||||||| |
Sbjct 856 CCTGAACATGAACAACATATTTTCTTCTCAAATTTGAAGTACCAAACCTTGTTAGACTCA 797
Query 42389 ATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCATGGA 42447
||||| || || || || | ||||||||||| | | ||| | | ||| ||||
Sbjct 796 ATTCAAGGCCGCTCACCGAATGTGGCATTTTTGCCTTTGGTATCGCTACCTGA-ATTGGA 738
Query 42448 AACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATAT 42507
||| ||||| ||||| ||| ||||| ||||||||| ||| ||| ||||| || ||
Sbjct 737 AACGTGGATTGAAACATGGTCGTTTTCTGAAACCATTCACTCGCGTTCGTACACTCACAT 678
Query 42508 TCAACGTAA 42516
| |||||
Sbjct 677 TATTCGTAA 669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554328265590160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |