Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq449735 215 6e-51 seq508109 141 1e-28 seq506238 136 4e-27 seq522862 111 2e-19 seq434791 91.5 2e-13 seq494957 82.4 8e-11 seq128994 82.4 8e-11 >seq449735 Length=3187 Score = 215 bits (238), Expect = 6e-51 Identities = 423/621 (68%), Gaps = 12/621 (2%) Strand=Plus/Plus Query 40448 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 40507 ||| | || ||||| || ||||||||||| ||||| ||||| || || |||||||| | Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84 Query 40508 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCTGCG 40567 |||||| |||| || | || || |||| ||| ||||||| | ||||| Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144 Query 40568 ATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCA 40627 || || || || | || |||||||| || ||||| ||||||| || | ||||| ||| Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204 Query 40628 ATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAA 40687 ||||| | || || ||| ||||| ||||| ||| |||||||| | || Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264 Query 40688 CATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACA 40747 || ||||||| || |||||| |||||| || || || || ||||| || || ||||| Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324 Query 40748 CTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAA 40807 ||| || || | |||||| | ||||| |||||||| | || | || || ||| Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384 Query 40808 GGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAGTTGATG 40867 || || || || |||||||| |||||| | ||||| || |||||| |||| | | ||| Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444 Query 40868 TATAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTC---CGGATGTTGCTAAC 40924 || || ||||| || || |||||||| ||||||| | | |||| ||| | Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATG-TGCCA-- 501 Query 40925 GATCGTCTGTATGATCTGTTCTATGAAGCTGATCAGACTGCATTTGAAGAACTGTATGAA 40984 | || || ||| || | ||||| | |||| | ||||| | || |||| | Sbjct 502 ---GGCCTTTACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGTA 555 Query 40985 AGCCTGGAAAAAGATCCAACTGTTCGTAAGAAACGCATCAAAGCGGTTGACCTGTTCCAA 41044 | ||| |||| | | ||||||| |||||||| ||||| |||| |||||| | Sbjct 556 AAATACGAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCA 615 Query 41045 CTTTTAGCACAGGAACGCGCA 41065 | || || || ||||| ||| Sbjct 616 ATGTTTGCGCAAGAACGTGCA 636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 244/364 (67%), Gaps = 12/364 (3%) Strand=Plus/Plus Query 42159 ATCATAACCACTTAGAACAACCTATGTTTTTTGGTGAAGATACTGGT---GTTGCACGTT 42215 || ||||||| | ||| | || |||||||| || || || | | || | |||| Sbjct 1794 ATAATAACCAAATGGAAGAGCCAATGTTTTTCGGCCAA---ACCGTTAACGTATCTCGTT 1850 Query 42216 ATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAGCTTTCTTTCTTCT 42275 |||| || ||| || |||| |||| || | |||| |||||||| || || | Sbjct 1851 ATGATCAACAAAAATACCCTATTTTTGAAAAACTAATTGAAAAGCAGCTTTCGTTTTTTT 1910 Query 42276 GGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAAC 42335 |||| || |||||||| || | | ||||| | | | | | | | ||||| | Sbjct 1911 GGCGCCCAGAAGAAGTAGACGTAAGCAAAGACCGCTTAGACTTTCAAGCATTACCTGATC 1970 Query 42336 ATGAAAAA-ATC-ATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCA 42393 ||||||| || ||||| | | ||| || | |||||||| || | |||| | | || Sbjct 1971 ATGAAAAGCATATATTTTTAAGT--AACTTAAAATATCAAACATTGCTTGATAGCGTACA 2028 Query 42394 GGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCATGGAAACCT 42452 || ||| || ||| | || | | || |||| ||| | | ||| | ||||| | Sbjct 2029 AGGGCGTTCACCAAACGTGGCCCTACTACCTATTGTATCGCTACCAGAGT-TAGAAACAT 2087 Query 42453 GGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATATTCAAC 42512 |||| ||||||||||||||||||||||| || || ||||| |||||||||||| | Sbjct 2088 GGATAGAAACGTGGGCGTTTAGTGAAACGATTCATAGCCGCTCGTACACGCATATTATTC 2147 Query 42513 GTAA 42516 |||| Sbjct 2148 GTAA 2151 >seq508109 Length=334 Score = 141 bits (156), Expect = 1e-28 Identities = 218/308 (71%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 89338 CCGCGTCCTTTTTGTTTCAGTCCCAGGAACACGATCGCGTTGACTTCTTTCAGGCGCGGA 89397 ||||| || ||||| |||| | | |||||| || || || || | | || || Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246 Query 89398 TCATTCTTCACGGCATCAACCACGTTAAACGCATCATCA-TAGGTTTTCGAGC--TAACC 89454 ||| | |||| || ||| || || ||||||| ||| ||| | ||| | | | | Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAG---TACGACCACTGATC 189 Query 89455 ATGAAGTGCAGGTTGATTTGCTGTTGTCCGGCTTCTGTCAGGTTCGCTACCGAGTCGAAA 89514 || ||||| ||||||||||||| ||| || || | || | ||| || ||| || Sbjct 188 ATAAAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAAC 129 Query 89515 GCGACATCAAAGCCAGCGTGTTTATAAACCGATACCGCAACAGCCCCAGCAACCGCCGCT 89574 || |||||||| ||||||||||||||||| ||||| |||| ||| |||||||| | ||| Sbjct 128 GCTACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCT 69 Query 89575 AAACGCGCTGCAACGTCTTTTGATACATCAGCAATGGTAAGGTTCGGCACAATGCCTTTA 89634 || || ||||| |||| ||| ||||||||||| || || || || | ||| |||| Sbjct 68 AATTTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGT 9 Query 89635 GAACGCGC 89642 ||||| || Sbjct 8 GAACGAGC 1 >seq506238 Length=275 Score = 136 bits (150), Expect = 4e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 50854 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 50913 |||||||| || ||||||||||| || ||||| || || ||||| | ||||| ||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162 Query 50914 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 50973 |||| ||||||||||| ||||| ||||| || ||||| || ||||| |||||||||||| Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102 Query 50974 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACCTTTACAGA 51026 |||||| | || || ||||| || | ||||| | | | || |||||||| Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49 >seq522862 Length=256 Score = 111 bits (122), Expect = 2e-19 Identities = 178/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 42356 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 42415 || ||||| | |||||||| || ||||| | || ||||| ||| | |||||| | ||| Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61 Query 42416 TTTTTGCCAATTGCATCCG-ATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAG 42474 || | || || | |||| | |||| | || || ||||||||||| ||| | || || Sbjct 62 TTACTTCCGATCGTATCCTTACCTGAGT-TAGAGACATGGATCGAAACCTGGTCCTTCAG 120 Query 42475 TGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAACTTGCACATTGATCCTTC 42534 ||| || |||||||||| || ||||| ||||||| |||||| | | ||| || || Sbjct 121 TGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAACATATTCGATGACCCGTC 180 Query 42535 TGTACAGTTCGACCAAATCCTTCGCAATGAAGCGATTATGAAACGTTCTGCATCAATGAC 42594 || | | | || | || | |||||| | ||| |||||| ||||| |||| | Sbjct 181 TGAAGTGCTAGATGATATTGTCAGCAATGTTGAGATACAGAAACGAGCTGCACCAATCGC 240 Query 42595 ACGGTATTATGAT 42607 | | ||||||||| Sbjct 241 AAGCTATTATGAT 253 >seq434791 Length=745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 39443 TTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGAT 39502 ||||||||| |||| | ||||||||| ||| ||||||||||||| ||| Sbjct 555 TTTCAGTTCTTTGTGGCGGATAATAAACTGTCATGCCAGCTCTATCAGCGTTCAGCAGAT 614 Query 39503 GTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCGCT 39562 | ||| |||| ||||||| || || ||| |||||| || || || ||||| |||| Sbjct 615 TTATTCCTAGGTGTGCCGTTTAACATTGCCAGCTATGCCCTACTTACCCATATGGTCGCG 674 Query 39563 GATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGATGTCCATATCTAT 39622 | ||||| || |||||||| || | | ||||| ||||||||| ||| || ||| Sbjct 675 CAAATTTGTGGTCTAGAAGTGGGGGAATTCATCTGGACAGGTGGTGATTGCCACATTTAT 734 Query 39623 AAAAA 39627 |||| Sbjct 735 CAAAA 739 >seq494957 Length=669 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 49017 ACAGTTCTAAAAATA-TCGGCCCCTTAGCTCAATAGG-TAGAGCTAATCACTCATAATGG 49074 |||||| || ||| | | |||||||||||||| | || |||||| | ||||||||| | Sbjct 164 ACAGTTATACAAAAAGTTGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCG 105 Query 49075 TTAGGTTCCCGGTTCAAGTCACGGGAGGGGCCACCA 49110 |||||| ||| |||| |||| |||||||||||||| Sbjct 104 TTAGGTCCCCAGTTCGAGTC-TGGGAGGGGCCACCA 70 >seq128994 Length=861 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 42329 CCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACC 42388 |||||||||||| || |||||| || || | |||| |||||| ||||||| | Sbjct 856 CCTGAACATGAACAACATATTTTCTTCTCAAATTTGAAGTACCAAACCTTGTTAGACTCA 797 Query 42389 ATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCATGGA 42447 ||||| || || || || | ||||||||||| | | ||| | | ||| |||| Sbjct 796 ATTCAAGGCCGCTCACCGAATGTGGCATTTTTGCCTTTGGTATCGCTACCTGA-ATTGGA 738 Query 42448 AACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATAT 42507 ||| ||||| ||||| ||| ||||| ||||||||| ||| ||| ||||| || || Sbjct 737 AACGTGGATTGAAACATGGTCGTTTTCTGAAACCATTCACTCGCGTTCGTACACTCACAT 678 Query 42508 TCAACGTAA 42516 | ||||| Sbjct 677 TATTCGTAA 669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554328265590160