Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq509954 156 5e-33 seq489705 87.8 2e-12 >seq509954 Length=433 Score = 156 bits (172), Expect = 5e-33 Identities = 252/359 (70%), Gaps = 4/359 (1%) Strand=Plus/Plus Query 107862 TTGCTCAGGACCTGAAGGCGATTCATGGTTTGGATGCCGAGCAAGAGCTCGCTAACATCC 107921 |||||||||| |||| || | ||||| ||||| || || |||| || || || || | Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 107922 TCAGCACTGAAATCCTTGCTGAAATCAACCGTGAAGTTGTTCGTACCATCTACACCAACG 107981 | |||||||| ||||| ||||| |||||||| | |||||||| | || | | | Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 107982 CTGTTGCAGGTGCTCAGAACAACACTGCTGCTCCTGGTATCTTCGACCTCGACGTTGACT 108041 | | ||||| || | | || ||||||||||||| | ||||| || Sbjct 121 CAAAACCTGGTGCACAAACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGATG 180 Query 108042 CCAATGGTCGCTGGTCTGTTGAGAAGTTCAAAGGTCTGCTGTTCCAAATCGAGCGCGATG 108101 | |||||||||||||| || || || |||||||| || |||||||||| || || |||| Sbjct 181 CAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGATG 240 Query 108102 CAAACGCAATCGGTCATGAGACTCGTCGTGGGAAGGGCAACATCCTCATCTGTTCTGCTG 108161 | ||| ||||| | | || || | ||||| || || ||| | | |||||||| ||| Sbjct 241 CTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCTG 300 Query 108162 ACGTTGCTTCGGCACTCGGCATG--GCAGGCGTTCTGGATTACACCCCTGCTCTCGCTG 108218 |||| ||||| ||| | ||| || || || | || |||| | | |||||| || ||| Sbjct 301 ACGTAGCTTCTGCA-TTGGC-TGCTGCTGGAATCCTTGATTTCGCACCTGCTATCTCTG 357 >seq489705 Length=338 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 157687 TTACGGGGTGTAGCGCAGCTTGGT-AGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTT 157745 ||||||||||||||| |||| ||| | |||| | |||||||||| |||||||||||| Sbjct 218 TTACGGGGTGTAGCGTAGCTCGGTTATCGCGCT-GCTTTGGGAGGGGAAGGTCGCAGGTT 160 Query 157746 CGAATCCTGTCACCCCGACT 157765 ||||||||| |||||||||| Sbjct 159 CGAATCCTGCCACCCCGACT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544149171886320