Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq311730 143 7e-30 seq523693 134 3e-27 >seq311730 Length=9896 Score = 143 bits (158), Expect = 7e-30 Identities = 221/311 (71%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 25784 ACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTG-CCACTTGCGCGTGCG 25842 || ||||| ||||| ||||| | ||||| ||||| ||| || | ||| || || || | Sbjct 2709 ACTACAATTTCAGTCGTGTATTTTTCTTGGCCTTG-TGGGTCAGTCCATTTACGTGTTTG 2767 Query 25843 CAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGC 25902 | || ||||||| |||| | ||| ||||| || || || || | | ||||| Sbjct 2768 AAGTTTACCTTCAACATAAATTTGTGAACCTTTACGGCAATATTCACCAACAATTTCTGC 2827 Query 25903 CAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTG 25962 ||||| || | || || |||||||||||||| ||||| || ||| || || || | Sbjct 2828 TAACTTGCCAAAAAATACCACACGGTGCCACTCAGTTTTATCAACCATTTGGCCAGTGTT 2887 Query 25963 CTTGTCTTTGTACTGCTCACTG--GTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTA 26020 ||||||||||| ||| ||| || || | | | | |||||| || || | |||||| Sbjct 2888 TTTGTCTTTGTA--GCTATCTGAAGTTGCTAAGGTGATATTTGCTACACCGTTGCCGTTA 2945 Query 26021 GGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATT 26080 |||||||| | ||||| || || || ||||| || || || | ||||| ||||| | Sbjct 2946 GGCATATAACGTACTTCAGGATCTTGTCCTAAATTACCAACCAAAATTACTTTGTTCACA 3005 Query 26081 CCGCGTGCCAT 26091 ||||||||||| Sbjct 3006 CCGCGTGCCAT 3016 >seq523693 Length=695 Score = 134 bits (148), Expect = 3e-27 Identities = 210/300 (70%), Gaps = 3/300 (1%) Strand=Plus/Minus Query 25779 GACCGACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCG 25838 || |||| ||||| ||||| ||||||| ||||| || |||| | |||||| || | Sbjct 377 GATCGACGACAATTTCAGTTGTGTACTTGTCTTGGCCGCTTTGGTCTTTCCACTTACGTG 318 Query 25839 TGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCT 25898 | |||| || ||||||| ||||| | || ||||| || |||||| | | | | Sbjct 317 TCTGCAATTTACCTTCAAGGTAAACTTGCGAACCTTTACGCAGGTACTCAGCCGTGATTT 258 Query 25899 CTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTG 25958 | || ||||| ||| | | ||| || ||||||||||| || |||| | || || Sbjct 257 CAGCTAACTTGCCGAACATCACCACGCGGTGCCACTCGGTACGTTCTTGTTGTTGACC-- 200 Query 25959 TCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGT 26018 ||| | |||||| | || ||||| |||| | | | ||| |||||||| | || | Sbjct 199 -CTGTTGGTCTTTCCAAGATTCGCTGGTAGCAAGGGTAATATTGGCCACGGCATTGCCAT 141 Query 26019 TAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAA 26078 | |||||||| | ||||| || || |||||||| |||||||| | || || ||||||| Sbjct 140 TTGGCATATAACGCACTTCGGGATCTTGGCCTAAATTGCCGACTAATATGACTTTGTTAA 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122889115027056