Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_020488.1
Length=38682
Score E
Sequences producing significant alignments: (Bits) Value
seq311730 143 7e-30
seq523693 134 3e-27
>seq311730
Length=9896
Score = 143 bits (158), Expect = 7e-30
Identities = 221/311 (71%), Gaps = 6/311 (2%)
Strand=Plus/Plus
Query 25784 ACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTG-CCACTTGCGCGTGCG 25842
|| ||||| ||||| ||||| | ||||| ||||| ||| || | ||| || || || |
Sbjct 2709 ACTACAATTTCAGTCGTGTATTTTTCTTGGCCTTG-TGGGTCAGTCCATTTACGTGTTTG 2767
Query 25843 CAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGC 25902
| || ||||||| |||| | ||| ||||| || || || || | | |||||
Sbjct 2768 AAGTTTACCTTCAACATAAATTTGTGAACCTTTACGGCAATATTCACCAACAATTTCTGC 2827
Query 25903 CAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTG 25962
||||| || | || || |||||||||||||| ||||| || ||| || || || |
Sbjct 2828 TAACTTGCCAAAAAATACCACACGGTGCCACTCAGTTTTATCAACCATTTGGCCAGTGTT 2887
Query 25963 CTTGTCTTTGTACTGCTCACTG--GTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTA 26020
||||||||||| ||| ||| || || | | | | |||||| || || | ||||||
Sbjct 2888 TTTGTCTTTGTA--GCTATCTGAAGTTGCTAAGGTGATATTTGCTACACCGTTGCCGTTA 2945
Query 26021 GGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATT 26080
|||||||| | ||||| || || || ||||| || || || | ||||| ||||| |
Sbjct 2946 GGCATATAACGTACTTCAGGATCTTGTCCTAAATTACCAACCAAAATTACTTTGTTCACA 3005
Query 26081 CCGCGTGCCAT 26091
|||||||||||
Sbjct 3006 CCGCGTGCCAT 3016
>seq523693
Length=695
Score = 134 bits (148), Expect = 3e-27
Identities = 210/300 (70%), Gaps = 3/300 (1%)
Strand=Plus/Minus
Query 25779 GACCGACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCG 25838
|| |||| ||||| ||||| ||||||| ||||| || |||| | |||||| || |
Sbjct 377 GATCGACGACAATTTCAGTTGTGTACTTGTCTTGGCCGCTTTGGTCTTTCCACTTACGTG 318
Query 25839 TGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCT 25898
| |||| || ||||||| ||||| | || ||||| || |||||| | | | |
Sbjct 317 TCTGCAATTTACCTTCAAGGTAAACTTGCGAACCTTTACGCAGGTACTCAGCCGTGATTT 258
Query 25899 CTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTG 25958
| || ||||| ||| | | ||| || ||||||||||| || |||| | || ||
Sbjct 257 CAGCTAACTTGCCGAACATCACCACGCGGTGCCACTCGGTACGTTCTTGTTGTTGACC-- 200
Query 25959 TCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGT 26018
||| | |||||| | || ||||| |||| | | | ||| |||||||| | || |
Sbjct 199 -CTGTTGGTCTTTCCAAGATTCGCTGGTAGCAAGGGTAATATTGGCCACGGCATTGCCAT 141
Query 26019 TAGGCATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAA 26078
| |||||||| | ||||| || || |||||||| |||||||| | || || |||||||
Sbjct 140 TTGGCATATAACGCACTTCGGGATCTTGGCCTAAATTGCCGACTAATATGACTTTGTTAA 81
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122889115027056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |