Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq523038 176 1e-39 seq494556 159 9e-35 seq517864 127 5e-25 seq523701 105 2e-18 seq516366 89.7 1e-13 >seq523038 Length=363 Score = 176 bits (194), Expect = 1e-39 Identities = 235/327 (72%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 5059 ATCTAGCATTTGCATCTGCATAGCTTTAACCTCGGTCACGTAGCGGTCAGTTCCATCTTG 5118 ||||||||||||||| ||| ||| || ||| || | || ||||| |||| | Sbjct 6 ATCTAGCATTTGCATTTGCTCAGCGCGAATCTCAGTAATATAACGGTCTTGACCATTAGG 65 Query 5119 CGCTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACTTTTGAGCCTTTACGTAA 5178 |||||||||| ||||| | || |||| |||||||||||||| ||||||||| || Sbjct 66 ATCTTGATATTTACGAGTACGCAAACTGCCTTCGATATAAACTTTACTGCCTTTACGCAA 125 Query 5179 ATACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACTTTATGCCATTCGGTAGC 5238 |||||| || ||||| ||||| | ||| ||| || |||| ||||||||| || || Sbjct 126 ATACTGCGCGGCAATTTCACCCAAACGATTAAATAGAGAAATACGATGCCATTCCGTCGC 185 Query 5239 TTCACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTTGTTGCCACTGATATGTT 5298 ||| | |||||||| |||||| || ||||| ||||| ||||| || || || || Sbjct 186 TTCTCTTTTTTCGCCACTTTGCTTGTCGGTCCACTGCTCTGACGTTGCAACCGAGATATT 245 Query 5299 GGCAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCAGCGCCCAATGTACCGAT 5358 || | ||| || ||||| | ||||| | | || || || || || | ||||||| Sbjct 246 GGTCACGCTACCGCCGTTATTAAATTGACGTGCCTCAGGGTCTGCTCCAAGGTTACCGAT 305 Query 5359 GATGATTACTTTGTTTACGCCTCTCAT 5385 |||||| ||||| || || || | ||| Sbjct 306 GATGATAACTTTATTAACTCCGCGCAT 332 >seq494556 Length=462 Score = 159 bits (176), Expect = 9e-35 Identities = 210/290 (72%), Gaps = 1/290 (0%) Strand=Plus/Plus Query 5057 CTATCTAGCATTTGCATCTGCATAGCTTTAACCTCGGTCACGTAGCGGTCAGTTCCATCT 5116 ||||||||||| |||||||| ||| || || ||| | || ||||| | || || Sbjct 168 CTATCTAGCATCTGCATCTGGTCAGCGCGAATTTCAGTCGCATAACGGTCGCTACCGTCA 227 Query 5117 TGCGCTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACTTTTGAGCCTTTACGT 5176 | ||||| || || ||||||| || | ||||| ||||| ||||| |||||||| Sbjct 228 GGGGCTTGGTACTTACGAGTGCGTAGCTA-CCCTCAATATAGACTTTGCTACCTTTACGC 286 Query 5177 AAATACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACTTTATGCCATTCGGTA 5236 | |||||| || || || ||||| | ||| || || ||||| |||||||||||| Sbjct 287 AGATACTGAGCGGCGATTTCACCTAAACGATTGAATAGTGAAACACGATGCCATTCGGTC 346 Query 5237 GCTTCACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTTGTTGCCACTGATATG 5296 ||||| | ||||| || ||| |||||||||||||||||| || || |||||||| Sbjct 347 GCTTCTCTTTTTTCTCCACTTTGTTTATCAGTCCATTGCTCAGAGGTCGCTACTGATATA 406 Query 5297 TTGGCAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCAGCGCC 5346 |||| || ||| |||||||| | ||||| | | || ||||| || || Sbjct 407 TTGGTAACGCTACCACCGTTATTAAATTGACGTGCCTCAGGATCTGCACC 456 >seq517864 Length=512 Score = 127 bits (140), Expect = 5e-25 Identities = 226/334 (68%), Gaps = 18/334 (5%) Strand=Plus/Minus Query 5042 TGACCACCGTTGGCGCTATCTAGCATTTGCATCTGCATAGCTTTAACCTCGGTCACGTAG 5101 |||||||| | || | ||||||||||||||| ||| ||| || ||| || | || Sbjct 379 TGACCACCAGTCGCACCATCTAGCATTTGCATTTGCTCAGCACGAATCTCAGTAATATAA 320 Query 5102 CGGTCAGTTCCATCTTGCGCTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACT 5161 ||||| |||| | |||||||||| || || | ||| |||| |||||| Sbjct 319 CGGTCTTGACCATTGGGATCTTGATATTTACGGGTACGTAAACTGCCTTCGATA------ 266 Query 5162 TTTGAGCCTTTACGTAAATACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACT 5221 || |||||||| || ||||| ||||| | ||| ||| || |||| Sbjct 265 ------------CGCAAATACTGCGCGGCAATTTCACCCAAACGATTAAATAGAGAAATA 218 Query 5222 TTATGCCATTCGGTAGCTTCACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTT 5281 ||||||||| || ||||| | |||||||| |||||| || ||||| ||||| Sbjct 217 CGATGCCATTCCGTCGCTTCTCTTTTTTCGCCGCTTTGCTTGTCGGTCCACTGCTCTGAC 158 Query 5282 GTTGCCACTGATATGTTGGCAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCA 5341 ||||| || || || |||| | ||| || ||||| | ||||| | | || || || Sbjct 157 GTTGCAACCGAGATATTGGTCACGCTACCGCCGTTATTAAATTGACGTGCCTCAGGGTCT 98 Query 5342 GCGCCCAATGTACCGATGATGATTACTTTGTTTA 5375 || || | ||||||||||||| ||||| |||| Sbjct 97 GCTCCAAGGTTACCGATGATGATAACTTTATTTA 64 >seq523701 Length=322 Score = 105 bits (116), Expect = 2e-18 Identities = 183/265 (69%), Gaps = 1/265 (0%) Strand=Plus/Plus Query 5121 CTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACTTTTGAGCCTTTACGTAAAT 5180 |||| || || || || | || |||| |||||||| ||||| ||||||||||| || Sbjct 14 CTTGGTACTTACGCGTACGCAAGCTGCCTTCGATATAGACTTTACTGCCTTTACGTAGAT 73 Query 5181 ACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACTTTATGCCATTCGGTAGCTT 5240 |||| || || || ||||| | || ||| | |||| ||||||||| || |||| Sbjct 74 ACTGCGCCGCGATTTCACCCAAGCGATTAAATAA-GAAATACGATGCCATTCCGTCGCTT 132 Query 5241 CACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTTGTTGCCACTGATATGTTGG 5300 | | ||||| || |||||| || ||||| ||||| ||||| || || || |||| Sbjct 133 CTCTTTTTTCACCACTTTGCTTGTCGGTCCACTGCTCTGACGTTGCAACCGAAATATTGG 192 Query 5301 CAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCAGCGCCCAATGTACCGATGA 5360 | || || || || | ||||| | || || || || || | ||||||||| Sbjct 193 TCACACTACCGCCATTATTAAATTGACGCGCCTCAGGGTCTGCACCAAGGTTACCGATGA 252 Query 5361 TGATTACTTTGTTTACGCCTCTCAT 5385 |||| ||||| || || || | ||| Sbjct 253 TGATAACTTTATTAACTCCGCGCAT 277 >seq516366 Length=503 Score = 89.7 bits (98), Expect = 1e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27672 GGCAGACATACAGAAATATATGCTCAGTGCCAATTTTAAGCCACTGGCAGCGTCCACGAT 27731 ||| ||||| || || || ||| | | || || |||| |||| ||||||| || || || Sbjct 136 GGCTGACATCCAAAAGTACATGGTGACCGCTAAATTTACGCCATTGGCAGCCTCTACTAT 77 Query 27732 TGAGGCTAAAGGTTCTAGTAAGCCATTGATTGATAGCGGTCAGATGCGTAACGCCATTAC 27791 | || ||||| ||||||||||||||||||| |||||||||||| | || || || Sbjct 76 CGCTCGCAAGGGTTCGAGTAAGCCATTGATTGATACGGGTCAGATGCGTCAGGCAATAAC 17 Query 27792 ATAC 27795 |||| Sbjct 16 ATAC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129633960616860