Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_020841.1
Length=40803
Score E
Sequences producing significant alignments: (Bits) Value
seq523038 176 1e-39
seq494556 159 9e-35
seq517864 127 5e-25
seq523701 105 2e-18
seq516366 89.7 1e-13
>seq523038
Length=363
Score = 176 bits (194), Expect = 1e-39
Identities = 235/327 (72%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 5059 ATCTAGCATTTGCATCTGCATAGCTTTAACCTCGGTCACGTAGCGGTCAGTTCCATCTTG 5118
||||||||||||||| ||| ||| || ||| || | || ||||| |||| |
Sbjct 6 ATCTAGCATTTGCATTTGCTCAGCGCGAATCTCAGTAATATAACGGTCTTGACCATTAGG 65
Query 5119 CGCTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACTTTTGAGCCTTTACGTAA 5178
|||||||||| ||||| | || |||| |||||||||||||| ||||||||| ||
Sbjct 66 ATCTTGATATTTACGAGTACGCAAACTGCCTTCGATATAAACTTTACTGCCTTTACGCAA 125
Query 5179 ATACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACTTTATGCCATTCGGTAGC 5238
|||||| || ||||| ||||| | ||| ||| || |||| ||||||||| || ||
Sbjct 126 ATACTGCGCGGCAATTTCACCCAAACGATTAAATAGAGAAATACGATGCCATTCCGTCGC 185
Query 5239 TTCACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTTGTTGCCACTGATATGTT 5298
||| | |||||||| |||||| || ||||| ||||| ||||| || || || ||
Sbjct 186 TTCTCTTTTTTCGCCACTTTGCTTGTCGGTCCACTGCTCTGACGTTGCAACCGAGATATT 245
Query 5299 GGCAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCAGCGCCCAATGTACCGAT 5358
|| | ||| || ||||| | ||||| | | || || || || || | |||||||
Sbjct 246 GGTCACGCTACCGCCGTTATTAAATTGACGTGCCTCAGGGTCTGCTCCAAGGTTACCGAT 305
Query 5359 GATGATTACTTTGTTTACGCCTCTCAT 5385
|||||| ||||| || || || | |||
Sbjct 306 GATGATAACTTTATTAACTCCGCGCAT 332
>seq494556
Length=462
Score = 159 bits (176), Expect = 9e-35
Identities = 210/290 (72%), Gaps = 1/290 (0%)
Strand=Plus/Plus
Query 5057 CTATCTAGCATTTGCATCTGCATAGCTTTAACCTCGGTCACGTAGCGGTCAGTTCCATCT 5116
||||||||||| |||||||| ||| || || ||| | || ||||| | || ||
Sbjct 168 CTATCTAGCATCTGCATCTGGTCAGCGCGAATTTCAGTCGCATAACGGTCGCTACCGTCA 227
Query 5117 TGCGCTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACTTTTGAGCCTTTACGT 5176
| ||||| || || ||||||| || | ||||| ||||| ||||| ||||||||
Sbjct 228 GGGGCTTGGTACTTACGAGTGCGTAGCTA-CCCTCAATATAGACTTTGCTACCTTTACGC 286
Query 5177 AAATACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACTTTATGCCATTCGGTA 5236
| |||||| || || || ||||| | ||| || || ||||| ||||||||||||
Sbjct 287 AGATACTGAGCGGCGATTTCACCTAAACGATTGAATAGTGAAACACGATGCCATTCGGTC 346
Query 5237 GCTTCACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTTGTTGCCACTGATATG 5296
||||| | ||||| || ||| |||||||||||||||||| || || ||||||||
Sbjct 347 GCTTCTCTTTTTTCTCCACTTTGTTTATCAGTCCATTGCTCAGAGGTCGCTACTGATATA 406
Query 5297 TTGGCAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCAGCGCC 5346
|||| || ||| |||||||| | ||||| | | || ||||| || ||
Sbjct 407 TTGGTAACGCTACCACCGTTATTAAATTGACGTGCCTCAGGATCTGCACC 456
>seq517864
Length=512
Score = 127 bits (140), Expect = 5e-25
Identities = 226/334 (68%), Gaps = 18/334 (5%)
Strand=Plus/Minus
Query 5042 TGACCACCGTTGGCGCTATCTAGCATTTGCATCTGCATAGCTTTAACCTCGGTCACGTAG 5101
|||||||| | || | ||||||||||||||| ||| ||| || ||| || | ||
Sbjct 379 TGACCACCAGTCGCACCATCTAGCATTTGCATTTGCTCAGCACGAATCTCAGTAATATAA 320
Query 5102 CGGTCAGTTCCATCTTGCGCTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACT 5161
||||| |||| | |||||||||| || || | ||| |||| ||||||
Sbjct 319 CGGTCTTGACCATTGGGATCTTGATATTTACGGGTACGTAAACTGCCTTCGATA------ 266
Query 5162 TTTGAGCCTTTACGTAAATACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACT 5221
|| |||||||| || ||||| ||||| | ||| ||| || ||||
Sbjct 265 ------------CGCAAATACTGCGCGGCAATTTCACCCAAACGATTAAATAGAGAAATA 218
Query 5222 TTATGCCATTCGGTAGCTTCACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTT 5281
||||||||| || ||||| | |||||||| |||||| || ||||| |||||
Sbjct 217 CGATGCCATTCCGTCGCTTCTCTTTTTTCGCCGCTTTGCTTGTCGGTCCACTGCTCTGAC 158
Query 5282 GTTGCCACTGATATGTTGGCAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCA 5341
||||| || || || |||| | ||| || ||||| | ||||| | | || || ||
Sbjct 157 GTTGCAACCGAGATATTGGTCACGCTACCGCCGTTATTAAATTGACGTGCCTCAGGGTCT 98
Query 5342 GCGCCCAATGTACCGATGATGATTACTTTGTTTA 5375
|| || | ||||||||||||| ||||| ||||
Sbjct 97 GCTCCAAGGTTACCGATGATGATAACTTTATTTA 64
>seq523701
Length=322
Score = 105 bits (116), Expect = 2e-18
Identities = 183/265 (69%), Gaps = 1/265 (0%)
Strand=Plus/Plus
Query 5121 CTTGATATTTGCGAGTGCTTAATTTGCCCTCGATATAAACTTTTGAGCCTTTACGTAAAT 5180
|||| || || || || | || |||| |||||||| ||||| ||||||||||| ||
Sbjct 14 CTTGGTACTTACGCGTACGCAAGCTGCCTTCGATATAGACTTTACTGCCTTTACGTAGAT 73
Query 5181 ACTGTGCTGCAATCTCACCAAGACGGTTAGCCAGCGAAACTTTATGCCATTCGGTAGCTT 5240
|||| || || || ||||| | || ||| | |||| ||||||||| || ||||
Sbjct 74 ACTGCGCCGCGATTTCACCCAAGCGATTAAATAA-GAAATACGATGCCATTCCGTCGCTT 132
Query 5241 CACGCTTTTCGCCTGATTGCTTATCAGTCCATTGCTCACTTGTTGCCACTGATATGTTGG 5300
| | ||||| || |||||| || ||||| ||||| ||||| || || || ||||
Sbjct 133 CTCTTTTTTCACCACTTTGCTTGTCGGTCCACTGCTCTGACGTTGCAACCGAAATATTGG 192
Query 5301 CAATGCTGCCACCGTTGCTGAATTGCTTTACTTCTGGATCAGCGCCCAATGTACCGATGA 5360
| || || || || | ||||| | || || || || || | |||||||||
Sbjct 193 TCACACTACCGCCATTATTAAATTGACGCGCCTCAGGGTCTGCACCAAGGTTACCGATGA 252
Query 5361 TGATTACTTTGTTTACGCCTCTCAT 5385
|||| ||||| || || || | |||
Sbjct 253 TGATAACTTTATTAACTCCGCGCAT 277
>seq516366
Length=503
Score = 89.7 bits (98), Expect = 1e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 27672 GGCAGACATACAGAAATATATGCTCAGTGCCAATTTTAAGCCACTGGCAGCGTCCACGAT 27731
||| ||||| || || || ||| | | || || |||| |||| ||||||| || || ||
Sbjct 136 GGCTGACATCCAAAAGTACATGGTGACCGCTAAATTTACGCCATTGGCAGCCTCTACTAT 77
Query 27732 TGAGGCTAAAGGTTCTAGTAAGCCATTGATTGATAGCGGTCAGATGCGTAACGCCATTAC 27791
| || ||||| ||||||||||||||||||| |||||||||||| | || || ||
Sbjct 76 CGCTCGCAAGGGTTCGAGTAAGCCATTGATTGATACGGGTCAGATGCGTCAGGCAATAAC 17
Query 27792 ATAC 27795
||||
Sbjct 16 ATAC 13
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129633960616860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |