Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_020843.1
Length=126434
Score E
Sequences producing significant alignments: (Bits) Value
seq510012 161 8e-35
seq503307 127 2e-24
>seq510012
Length=1165
Score = 161 bits (178), Expect = 8e-35
Identities = 430/643 (67%), Gaps = 23/643 (4%)
Strand=Plus/Minus
Query 42187 TCATCCATACACATGTCTTGTTCACAATACTTACGTCCGTACTCTTCAACCCACGAAGTG 42246
|| ||||| ||||| || ||||||||| ||||| || |||||||| ||| | ||||||
Sbjct 1128 TCGTCCATGCACATATCAACTTCACAATAGTTACGACCATACTCTTCTACCAA-GAAGTG 1070
Query 42247 TTGAACATTTTAGCTAAGTATTTAGTCAATGATGAT-TTACCACAACTCTCTTCACCAAT 42305
||||| | ||| || | ||| || || || | | | || ||| ||| ||||||
Sbjct 1069 TTGAATACTTTGGCGAGGTACTTTGT-AAGGGTACTCTTTGCACTTGACTCAGTACCAAT 1011
Query 42306 CAGGCATACTTTTAACAAAAATTCTTTACGTACAATACTTGGTA-GAAATTGCCAATGTT 42364
| | |||||||| || |||||||| || | | |||| | | ||||| | |
Sbjct 1010 GATAACAGCCTTTAACAAGAACTCTTTACGGACTAGAGAAGGTAGGTTACTGCCAGTACT 951
Query 42365 TATACGGATTATTTCTAATCTCTGTAGCTGAGGTATTAAACTGTGATCGAGTGTTATCAA 42424
|||| ||| | | |||| |||||| ||| ||||||||| | | ||| | || |
Sbjct 950 TATAGGGAGACTGACGTATCTTTGTAGCAGAGATATTAAACTCTAAACGATCTTCGTCTA 891
Query 42425 TAATTACATTTTC---ACAATTAAAGTGTTCCTCAACCCACCAAGTATATTCTGGCTCAG 42481
|| ||||| ||| || ||||| | || | || ||| ||| ||| ||||||||||
Sbjct 890 AAACTACATGTTCCGTACCTTTAAAATACTCGTTAATCCAAGAAGAATACTCTGGCTCAG 831
Query 42482 AACTAAACCACTTATCAACCTTATAAACATTATGTTCTTGTA--AGGAAAAT-TTGACTA 42538
| ||||| ||||||| || | || | | ||||| |||| | || |||
Sbjct 830 AGGAGAACCATTTATCAA---TAACACCAACACCGTTTTGTACGAGGATGTTCTTTACTT 774
Query 42539 TGTTGCACCACTCTACAACACCGTCTGGATAAGTATTAATATTTGTCTCGTCTACACAGA 42598
|||| ||| | | |||| ||||| |||| || | |||||| || ||||| |
Sbjct 773 CTTTGCTCCAAAGTTCCGCACCTTCTGG-TAAGGGGGTATCTCTGTCTCATCCACACAAA 715
Query 42599 TAACCTTAATATGAGGT--AAGTTTTGAAAGGTACTTTTAAGCCACAATAGTCGTTTTTT 42656
||| ||||||| | || ||| ||||||||| || | ||| | || ||||| ||
Sbjct 714 CAACTGTAATATGGTCTTAAATTTTGGAAAGGTACGCTTCAACCAAAGCAGGCGTTTCTT 655
Query 42657 CAGTGTAAG-TTTATCTCGGAGGAATTTTGGT-----TGAGAAT-CTACAAACTTCTGGT 42709
| ||||| | ||| | | | || | || || | | |||||||| |
Sbjct 654 CTTAGTAAGACGTTTCTGCCAATACTCTTTATCCTCCAAAGTATACAAAAAACTTCTCAT 595
Query 42710 CAAACGACAAGATAACATACAGAGTGTCCACTTGTGTTGCTGCTTCTGTGATGGCGTAAA 42769
|| | ||||| | |||||||| ||| |||||||||| ||||| ||||| || | ||
Sbjct 594 CATAGGACAACACTACATACAGGTGGTCAACTTGTGTTGATGCTTGAGTGATAGCATGAA 535
Query 42770 TATGCCCACTATGTAATGGTGCAAACTTGCCTGTAATAACTCC 42812
| || ||||| || | ||||| ||||| ||||| ||||||||
Sbjct 534 TGTGTCCACTGTGGAGAGGTGCGAACTTACCTGTTATAACTCC 492
>seq503307
Length=531
Score = 127 bits (140), Expect = 2e-24
Identities = 178/247 (72%), Gaps = 2/247 (1%)
Strand=Plus/Minus
Query 41083 TTACTTACTCGCTTTAAACCATGTGTAACAACCATATACACTGTTTGTAAGGAACATTAC 41142
||| ||||| |||||||||||||||||| ||| || | |||||| | | |||||| |
Sbjct 426 TTATTTACTTGCTTTAAACCATGTGTAAGCACCGTAGATACTGTTAGATAAGAACATCAA 367
Query 41143 CCACATAATTAACACCCCGTAGCCATCCCCATTGGTGATGA-AGTTCTGCACCCACATAT 41201
|||||| | || || || || |||||| || | |||| || || |||||| |
Sbjct 366 CCACATTACCAAGACACCAACACCTTCCCCAGTGTTCATGATTGTAACGC-TCCACATGT 308
Query 41202 AAATTGATAGTATGTTAACAACAATCCAGCAAACCCATTGTTCACGATAACCTTTTACCA 41261
| ||||| | ||||| || |||||||| || ||||| || ||||| ||||||||| |||
Sbjct 307 AGATTGACAAGATGTTTACTACAATCCAACATACCCACTGCTCACGGTAACCTTTTGCCA 248
Query 41262 TGAAATATGTAGCCAATACTGAAAGTGTCGTTGTAGTCGCATCTACAATAGATAGTTTAC 41321
| || |||| || | ||| |||| ||||| || ||||| || | |||| ||
Sbjct 247 TAAAGAATGTTGCAATTACACTAAGTACAGTTGTTGTAGCATCCACCAATGATAAAGCAC 188
Query 41322 CTCCAAT 41328
| |||||
Sbjct 187 CACCAAT 181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 401873587813690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |