Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020843.1 Length=126434 Score E Sequences producing significant alignments: (Bits) Value seq510012 161 8e-35 seq503307 127 2e-24 >seq510012 Length=1165 Score = 161 bits (178), Expect = 8e-35 Identities = 430/643 (67%), Gaps = 23/643 (4%) Strand=Plus/Minus Query 42187 TCATCCATACACATGTCTTGTTCACAATACTTACGTCCGTACTCTTCAACCCACGAAGTG 42246 || ||||| ||||| || ||||||||| ||||| || |||||||| ||| | |||||| Sbjct 1128 TCGTCCATGCACATATCAACTTCACAATAGTTACGACCATACTCTTCTACCAA-GAAGTG 1070 Query 42247 TTGAACATTTTAGCTAAGTATTTAGTCAATGATGAT-TTACCACAACTCTCTTCACCAAT 42305 ||||| | ||| || | ||| || || || | | | || ||| ||| |||||| Sbjct 1069 TTGAATACTTTGGCGAGGTACTTTGT-AAGGGTACTCTTTGCACTTGACTCAGTACCAAT 1011 Query 42306 CAGGCATACTTTTAACAAAAATTCTTTACGTACAATACTTGGTA-GAAATTGCCAATGTT 42364 | | |||||||| || |||||||| || | | |||| | | ||||| | | Sbjct 1010 GATAACAGCCTTTAACAAGAACTCTTTACGGACTAGAGAAGGTAGGTTACTGCCAGTACT 951 Query 42365 TATACGGATTATTTCTAATCTCTGTAGCTGAGGTATTAAACTGTGATCGAGTGTTATCAA 42424 |||| ||| | | |||| |||||| ||| ||||||||| | | ||| | || | Sbjct 950 TATAGGGAGACTGACGTATCTTTGTAGCAGAGATATTAAACTCTAAACGATCTTCGTCTA 891 Query 42425 TAATTACATTTTC---ACAATTAAAGTGTTCCTCAACCCACCAAGTATATTCTGGCTCAG 42481 || ||||| ||| || ||||| | || | || ||| ||| ||| |||||||||| Sbjct 890 AAACTACATGTTCCGTACCTTTAAAATACTCGTTAATCCAAGAAGAATACTCTGGCTCAG 831 Query 42482 AACTAAACCACTTATCAACCTTATAAACATTATGTTCTTGTA--AGGAAAAT-TTGACTA 42538 | ||||| ||||||| || | || | | ||||| |||| | || ||| Sbjct 830 AGGAGAACCATTTATCAA---TAACACCAACACCGTTTTGTACGAGGATGTTCTTTACTT 774 Query 42539 TGTTGCACCACTCTACAACACCGTCTGGATAAGTATTAATATTTGTCTCGTCTACACAGA 42598 |||| ||| | | |||| ||||| |||| || | |||||| || ||||| | Sbjct 773 CTTTGCTCCAAAGTTCCGCACCTTCTGG-TAAGGGGGTATCTCTGTCTCATCCACACAAA 715 Query 42599 TAACCTTAATATGAGGT--AAGTTTTGAAAGGTACTTTTAAGCCACAATAGTCGTTTTTT 42656 ||| ||||||| | || ||| ||||||||| || | ||| | || ||||| || Sbjct 714 CAACTGTAATATGGTCTTAAATTTTGGAAAGGTACGCTTCAACCAAAGCAGGCGTTTCTT 655 Query 42657 CAGTGTAAG-TTTATCTCGGAGGAATTTTGGT-----TGAGAAT-CTACAAACTTCTGGT 42709 | ||||| | ||| | | | || | || || | | |||||||| | Sbjct 654 CTTAGTAAGACGTTTCTGCCAATACTCTTTATCCTCCAAAGTATACAAAAAACTTCTCAT 595 Query 42710 CAAACGACAAGATAACATACAGAGTGTCCACTTGTGTTGCTGCTTCTGTGATGGCGTAAA 42769 || | ||||| | |||||||| ||| |||||||||| ||||| ||||| || | || Sbjct 594 CATAGGACAACACTACATACAGGTGGTCAACTTGTGTTGATGCTTGAGTGATAGCATGAA 535 Query 42770 TATGCCCACTATGTAATGGTGCAAACTTGCCTGTAATAACTCC 42812 | || ||||| || | ||||| ||||| ||||| |||||||| Sbjct 534 TGTGTCCACTGTGGAGAGGTGCGAACTTACCTGTTATAACTCC 492 >seq503307 Length=531 Score = 127 bits (140), Expect = 2e-24 Identities = 178/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 41083 TTACTTACTCGCTTTAAACCATGTGTAACAACCATATACACTGTTTGTAAGGAACATTAC 41142 ||| ||||| |||||||||||||||||| ||| || | |||||| | | |||||| | Sbjct 426 TTATTTACTTGCTTTAAACCATGTGTAAGCACCGTAGATACTGTTAGATAAGAACATCAA 367 Query 41143 CCACATAATTAACACCCCGTAGCCATCCCCATTGGTGATGA-AGTTCTGCACCCACATAT 41201 |||||| | || || || || |||||| || | |||| || || |||||| | Sbjct 366 CCACATTACCAAGACACCAACACCTTCCCCAGTGTTCATGATTGTAACGC-TCCACATGT 308 Query 41202 AAATTGATAGTATGTTAACAACAATCCAGCAAACCCATTGTTCACGATAACCTTTTACCA 41261 | ||||| | ||||| || |||||||| || ||||| || ||||| ||||||||| ||| Sbjct 307 AGATTGACAAGATGTTTACTACAATCCAACATACCCACTGCTCACGGTAACCTTTTGCCA 248 Query 41262 TGAAATATGTAGCCAATACTGAAAGTGTCGTTGTAGTCGCATCTACAATAGATAGTTTAC 41321 | || |||| || | ||| |||| ||||| || ||||| || | |||| || Sbjct 247 TAAAGAATGTTGCAATTACACTAAGTACAGTTGTTGTAGCATCCACCAATGATAAAGCAC 188 Query 41322 CTCCAAT 41328 | ||||| Sbjct 187 CACCAAT 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401873587813690