Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq509954 176 5e-39 seq515292 129 7e-25 seq508167 129 7e-25 seq417355 98.7 1e-15 seq408527 98.7 1e-15 seq522593 89.7 6e-13 >seq509954 Length=433 Score = 176 bits (194), Expect = 5e-39 Identities = 229/315 (73%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 1157 GCAGAAGCTACATCAGCAGATGTGATGATGATGTTACCCTTCCCTCTACGAGTTTCCTGT 1216 ||||||||||| |||| || ||| || | |||||| || || | | ||||| | Sbjct 313 GCAGAAGCTACGTCAGATGAACAGATAATAAAGTTACCTTTACCACGTCTGGTTTCTTTA 254 Query 1217 GCGATTGCGTTTGCATCTCTTTCAATCTGGAATAATAATCCTTTGAACTTTTCAACTGAC 1276 |||||| ||| ||||| | |||||| ||||| | | ||||||||| ||||| |||||| Sbjct 253 GCGATTTGGTTAGCATCACGTTCAATTTGGAACATAAGTCCTTTGAATTTTTCTACTGAC 194 Query 1277 CATCTACCGTTGGAGTCAACGTCTAGATCGAATACACCCGCGTTAGC--AACGTTTGCTT 1334 || | ||| || | || ||||||| |||||| | ||| ||||| || ||| | || Sbjct 193 CAGCGACCATTTGCATCTACGTCTAAATCGAAGATACCAGCGTTTGCTGAACCAGT--TT 136 Query 1335 GTGCACCAGGTTTTGCACCTCTGTACACTGTTCTAACTACCTCACGGTTGATTTCAGCAA 1394 ||||||||||||||||| | || || || | || || ||||||||| ||||| |||| Sbjct 135 GTGCACCAGGTTTTGCAGTTGCATATACGGTACGAATTAGCTCACGGTTAATTTCTGCAA 76 Query 1395 GTATCTCTGTTGAGAGAATGTTTGCCAACTCAGACTCAGCATCTAATCCGTGGATAGCTT 1454 | || || ||||| ||||| ||||| | || || || || || || || | ||||| Sbjct 75 GAATTTCAGTTGAAAGAATATTTGCAAGTTCTTCTTCTGCGTCCAAGCCATGTACAGCTT 16 Query 1455 TTAAGTCTTGAGCAA 1469 | | || ||||||| Sbjct 15 TCATATCCTGAGCAA 1 >seq515292 Length=303 Score = 129 bits (142), Expect = 7e-25 Identities = 177/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241 ||||| ||| || || || || || || |||||||| || ||||| ||||||||| || Sbjct 46 TACACAAATTGGTCCAACACCTGGTCCACCACCTCCGTGAGGAATTGCGAATGTCTTGTG 105 Query 138242 TAAATTTAGATGACATACATCTGCACCA-TAGTCACATGGTTTTGCTAGACCTACCTGTG 138300 ||||| | ||| || |||||||| ||| | || | ||| |||| || || || || | Sbjct 106 CAAATTCAAATGGCAAACATCTGCTCCAATTGTAGC-TGGATTTGTTAATCCAACTTGCG 164 Query 138301 CATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATA 138360 |||| | || || || || | ||| || ||||||||||||||||| ||| | | Sbjct 165 CATTCATGTTGGCTCCGTCCATATAAACTAAACCACCATTGTCATGAATGATTTGTGTAA 224 Query 138361 TCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG 138420 | | ||| || ||||||| |||||||| || ||||||||||| | ||| | ||| | Sbjct 225 TTTCTCTAATCGCACTTTCAAAAACACCATGTGTTGATGGATATGTGACCATCAAACAAG 284 Query 138421 AGAGT 138425 | ||| Sbjct 285 AAAGT 289 >seq508167 Length=647 Score = 129 bits (142), Expect = 7e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | || || || || || || ||||||||| ||| || || ||| Sbjct 594 ACGCCAATAGGTCCCATACCTGGTCCACCGCCGCCGTGTGGAATAGCGAAGGTTTTGTGT 535 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || |||||| | ||||| || ||| | |||| || || || || || ||| Sbjct 534 AAGTTAAGATGAGAAACATCAGCGCCAATAAAGCCTGGTGATGTTACTCCAACTTGAGCA 475 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| || || || ||||||||||||||||||| || ||||| || Sbjct 474 TTCATGTTCGCGCCATCAAGGTAAACTTGACCACCATTGTCATGAATAATATTACAAATT 415 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418 | | || || ||||| | |||||||| || ||||| || || ||||| ||||| Sbjct 414 TCTGCAATCGTTTTTTCATAAACACCATGCGTAGATGGGTAAGTGATCATGATACA 359 >seq417355 Length=987 Score = 98.7 bits (108), Expect = 1e-15 Identities = 184/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 ||||||||| | || ||| | ||||| || || || | |||||||| || || || Sbjct 462 TACAAATGGCGCAAGGTGTGATTTAACACCGATTGGGCCCATACCAGGACCACCGCCGCC 403 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCAC 138276 || || ||| || || || ||||| || || || |||| ||||| || ||| | Sbjct 402 GTGCGGGATAGCAAAGGTTTTGTGTAAGTTAAGGTGCGATACGTCTGCGCCGATAAAGCC 343 Query 138277 ATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCAC 138336 |||| || || || |||||||| || | ||||| || || ||||| || ||||| | Sbjct 342 -TGGTGATGTTAAGCCAACCTGTGCGTTCATGTTTGCGCCGTCTAGATACACTTGACCGC 284 Query 138337 CATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCG 138396 ||| | ||| ||||| | |||| | | ||| | ||| | ||||| ||||||| Sbjct 283 CATATTGATGGACGATTTCGCATACTTCGCGGATTGATTCTTCGTACACACCGTGAGTCG 224 Query 138397 ATGGATATGTAATCATAATACATGAGAG 138424 |||| || || ||||| || || || || Sbjct 223 ATGGGTACGTGATCATGATGCACGATAG 196 >seq408527 Length=595 Score = 98.7 bits (108), Expect = 1e-15 Identities = 196/285 (69%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 138291 CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACG 138350 || ||||||||||| | ||| |||||||| | ||| |||||||| |||| | ||||| Sbjct 43 CCAACCTGTGCATTCATATTGGCACCATCCATATAAACCTGACCGCCATGTTTATGAATA 102 Query 138351 ATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATC 138410 | | ||| || | | |||| | |||||| || ||||| || |||||||| |||||| Sbjct 103 AGGTCACAGATTTTACGGATGCCTTCTTCAAACACGCCATGCGTTGATGGATAAGTAATC 162 Query 138411 AT-AATACA-TGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGT 138468 || ||| || ||| | | ||| ||| | | ||| | |||||| | ||| | Sbjct 163 ATCAATGCACCTAGATTGGCACTGTTTTCTTCA-CACTTAGCAGT-TAGATCATCGATAT 220 Query 138469 CTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCAC 138528 | | ||| |||| |||||| || || | | |||||||| || ||| | ||| Sbjct 221 CAACGTTACCATTGTCATCAGTTTTAACCACGATTACTTTCATGCCCATCATCATAGCAG 280 Query 138529 TAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACAT 138573 | ||||| || || || || ||||||| || || | ||| |||| Sbjct 281 TCGCAGGGTTGGTACCGTGCGCTGACTGAGGGATTAAACAAACAT 325 >seq522593 Length=217 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/181 (72%), Gaps = 7/181 (4%) Strand=Plus/Minus Query 138252 TGACATACATCTGCACCA-TAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATT 138310 ||||| |||||||| ||| ||||| | ||| |||| | ||||| |||||||| | || Sbjct 215 TGACAAACATCTGCGCCAATAGTCGC-TGGATTTGTCAATCCTACTTGTGCATTCATGTT 157 Query 138311 TGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTCTGAT 138370 ||||| || | || || ||||||||||||||| | ||| | | || | ||| || Sbjct 156 AGCACCGTCCATGTAAACTAAACCACCATTGTCATGTATGATTTGAGTAATTTCTCTAAT 97 Query 138371 GTTTG---TTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGTTC 138427 | | ||||||| ||||||||||| ||||| || || | ||| | ||| || | ||| Sbjct 96 --TAGCACTTTCAAAAACACCATGAGTAGATGGGTAAGTTACCATTAAACAAGATAATTC 39 Query 138428 A 138428 | Sbjct 38 A 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575195089785040