Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq509954 176 5e-39
seq515292 129 7e-25
seq508167 129 7e-25
seq417355 98.7 1e-15
seq408527 98.7 1e-15
seq522593 89.7 6e-13
>seq509954
Length=433
Score = 176 bits (194), Expect = 5e-39
Identities = 229/315 (73%), Gaps = 4/315 (1%)
Strand=Plus/Minus
Query 1157 GCAGAAGCTACATCAGCAGATGTGATGATGATGTTACCCTTCCCTCTACGAGTTTCCTGT 1216
||||||||||| |||| || ||| || | |||||| || || | | ||||| |
Sbjct 313 GCAGAAGCTACGTCAGATGAACAGATAATAAAGTTACCTTTACCACGTCTGGTTTCTTTA 254
Query 1217 GCGATTGCGTTTGCATCTCTTTCAATCTGGAATAATAATCCTTTGAACTTTTCAACTGAC 1276
|||||| ||| ||||| | |||||| ||||| | | ||||||||| ||||| ||||||
Sbjct 253 GCGATTTGGTTAGCATCACGTTCAATTTGGAACATAAGTCCTTTGAATTTTTCTACTGAC 194
Query 1277 CATCTACCGTTGGAGTCAACGTCTAGATCGAATACACCCGCGTTAGC--AACGTTTGCTT 1334
|| | ||| || | || ||||||| |||||| | ||| ||||| || ||| | ||
Sbjct 193 CAGCGACCATTTGCATCTACGTCTAAATCGAAGATACCAGCGTTTGCTGAACCAGT--TT 136
Query 1335 GTGCACCAGGTTTTGCACCTCTGTACACTGTTCTAACTACCTCACGGTTGATTTCAGCAA 1394
||||||||||||||||| | || || || | || || ||||||||| ||||| ||||
Sbjct 135 GTGCACCAGGTTTTGCAGTTGCATATACGGTACGAATTAGCTCACGGTTAATTTCTGCAA 76
Query 1395 GTATCTCTGTTGAGAGAATGTTTGCCAACTCAGACTCAGCATCTAATCCGTGGATAGCTT 1454
| || || ||||| ||||| ||||| | || || || || || || || | |||||
Sbjct 75 GAATTTCAGTTGAAAGAATATTTGCAAGTTCTTCTTCTGCGTCCAAGCCATGTACAGCTT 16
Query 1455 TTAAGTCTTGAGCAA 1469
| | || |||||||
Sbjct 15 TCATATCCTGAGCAA 1
>seq515292
Length=303
Score = 129 bits (142), Expect = 7e-25
Identities = 177/245 (72%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 138182 TACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATG 138241
||||| ||| || || || || || || |||||||| || ||||| ||||||||| ||
Sbjct 46 TACACAAATTGGTCCAACACCTGGTCCACCACCTCCGTGAGGAATTGCGAATGTCTTGTG 105
Query 138242 TAAATTTAGATGACATACATCTGCACCA-TAGTCACATGGTTTTGCTAGACCTACCTGTG 138300
||||| | ||| || |||||||| ||| | || | ||| |||| || || || || |
Sbjct 106 CAAATTCAAATGGCAAACATCTGCTCCAATTGTAGC-TGGATTTGTTAATCCAACTTGCG 164
Query 138301 CATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATA 138360
|||| | || || || || | ||| || ||||||||||||||||| ||| | |
Sbjct 165 CATTCATGTTGGCTCCGTCCATATAAACTAAACCACCATTGTCATGAATGATTTGTGTAA 224
Query 138361 TCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG 138420
| | ||| || ||||||| |||||||| || ||||||||||| | ||| | ||| |
Sbjct 225 TTTCTCTAATCGCACTTTCAAAAACACCATGTGTTGATGGATATGTGACCATCAAACAAG 284
Query 138421 AGAGT 138425
| |||
Sbjct 285 AAAGT 289
>seq508167
Length=647
Score = 129 bits (142), Expect = 7e-25
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|| |||||||| || | || || || || || || ||||||||| ||| || || |||
Sbjct 594 ACGCCAATAGGTCCCATACCTGGTCCACCGCCGCCGTGTGGAATAGCGAAGGTTTTGTGT 535
Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302
|| || |||||| | ||||| || ||| | |||| || || || || || |||
Sbjct 534 AAGTTAAGATGAGAAACATCAGCGCCAATAAAGCCTGGTGATGTTACTCCAACTTGAGCA 475
Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362
|| | || || ||||| || || || ||||||||||||||||||| || ||||| ||
Sbjct 474 TTCATGTTCGCGCCATCAAGGTAAACTTGACCACCATTGTCATGAATAATATTACAAATT 415
Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418
| | || || ||||| | |||||||| || ||||| || || ||||| |||||
Sbjct 414 TCTGCAATCGTTTTTTCATAAACACCATGCGTAGATGGGTAAGTGATCATGATACA 359
>seq417355
Length=987
Score = 98.7 bits (108), Expect = 1e-15
Identities = 184/268 (69%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217
||||||||| | || ||| | ||||| || || || | |||||||| || || ||
Sbjct 462 TACAAATGGCGCAAGGTGTGATTTAACACCGATTGGGCCCATACCAGGACCACCGCCGCC 403
Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCAC 138276
|| || ||| || || || ||||| || || || |||| ||||| || ||| |
Sbjct 402 GTGCGGGATAGCAAAGGTTTTGTGTAAGTTAAGGTGCGATACGTCTGCGCCGATAAAGCC 343
Query 138277 ATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCAC 138336
|||| || || || |||||||| || | ||||| || || ||||| || ||||| |
Sbjct 342 -TGGTGATGTTAAGCCAACCTGTGCGTTCATGTTTGCGCCGTCTAGATACACTTGACCGC 284
Query 138337 CATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCG 138396
||| | ||| ||||| | |||| | | ||| | ||| | ||||| |||||||
Sbjct 283 CATATTGATGGACGATTTCGCATACTTCGCGGATTGATTCTTCGTACACACCGTGAGTCG 224
Query 138397 ATGGATATGTAATCATAATACATGAGAG 138424
|||| || || ||||| || || || ||
Sbjct 223 ATGGGTACGTGATCATGATGCACGATAG 196
>seq408527
Length=595
Score = 98.7 bits (108), Expect = 1e-15
Identities = 196/285 (69%), Gaps = 4/285 (1%)
Strand=Plus/Plus
Query 138291 CCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACG 138350
|| ||||||||||| | ||| |||||||| | ||| |||||||| |||| | |||||
Sbjct 43 CCAACCTGTGCATTCATATTGGCACCATCCATATAAACCTGACCGCCATGTTTATGAATA 102
Query 138351 ATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATC 138410
| | ||| || | | |||| | |||||| || ||||| || |||||||| ||||||
Sbjct 103 AGGTCACAGATTTTACGGATGCCTTCTTCAAACACGCCATGCGTTGATGGATAAGTAATC 162
Query 138411 AT-AATACA-TGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGT 138468
|| ||| || ||| | | ||| ||| | | ||| | |||||| | ||| |
Sbjct 163 ATCAATGCACCTAGATTGGCACTGTTTTCTTCA-CACTTAGCAGT-TAGATCATCGATAT 220
Query 138469 CTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCAC 138528
| | ||| |||| |||||| || || | | |||||||| || ||| | |||
Sbjct 221 CAACGTTACCATTGTCATCAGTTTTAACCACGATTACTTTCATGCCCATCATCATAGCAG 280
Query 138529 TAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACAT 138573
| ||||| || || || || ||||||| || || | ||| ||||
Sbjct 281 TCGCAGGGTTGGTACCGTGCGCTGACTGAGGGATTAAACAAACAT 325
>seq522593
Length=217
Score = 89.7 bits (98), Expect = 6e-13
Identities = 131/181 (72%), Gaps = 7/181 (4%)
Strand=Plus/Minus
Query 138252 TGACATACATCTGCACCA-TAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATT 138310
||||| |||||||| ||| ||||| | ||| |||| | ||||| |||||||| | ||
Sbjct 215 TGACAAACATCTGCGCCAATAGTCGC-TGGATTTGTCAATCCTACTTGTGCATTCATGTT 157
Query 138311 TGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATCTGTCTGAT 138370
||||| || | || || ||||||||||||||| | ||| | | || | ||| ||
Sbjct 156 AGCACCGTCCATGTAAACTAAACCACCATTGTCATGTATGATTTGAGTAATTTCTCTAAT 97
Query 138371 GTTTG---TTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAGAGTTC 138427
| | ||||||| ||||||||||| ||||| || || | ||| | ||| || | |||
Sbjct 96 --TAGCACTTTCAAAAACACCATGAGTAGATGGGTAAGTTACCATTAAACAAGATAATTC 39
Query 138428 A 138428
|
Sbjct 38 A 38
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 575195089785040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |