Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 167 3e-36
seq504380 96.9 4e-15
seq28532 82.4 9e-11
>seq44246
Length=4029
Score = 167 bits (184), Expect = 3e-36
Identities = 652/1007 (65%), Gaps = 26/1007 (3%)
Strand=Plus/Plus
Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGG 75743
||||||||||| | | ||||||| || ||||| ||||||||| |||| ||| |
Sbjct 826 AGAGATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGCAAC 885
Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGT 75802
|| | |||||||| | ||||| | || || || || ||| || | |||
Sbjct 886 CAGGAC--TGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGG- 942
Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTA 75862
||||||||||| |||||||| | ||||| |||||| | | ||| ||| ||
Sbjct 943 GAGGAGTTTGAGAAGCTCTACACCCAATATGAGCGGGAGGGCCGGGTCAA-GCGTGTGGT 1001
Query 75863 CCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921
|| | | | | || ||| | || || || | || ||||||||| | || || || ||
Sbjct 1002 GAAGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACGCCGTA 1061
Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981
||||| ||||| || || || |||| |||||| ||||| |||| ||||||| |||||
Sbjct 1062 CATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAA 1121
Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041
| || || || ||||||||||| | || ||| | | |||||| ||||| ||
Sbjct 1122 GTGCAGCAACCTCTGCACGGAAATCGTTGAATACTCCAGTGGCGATGAGGTCGCTGTGTG 1181
Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101
||| |||| || ||||| || | ||| |||| ||| || |||||||| |
Sbjct 1182 TAATCTGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAG---CGGACTTTTGACTT 1238
Query 76102 TGAAAAACTTCA---TGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158
| ||||| | || | || | ||| || || || || ||| |||| ||
Sbjct 1239 CAAGAAACTGGAGTCTGTGACCAAAGTGATCGT---GAAGAACCTGAACAAGATCATAGA 1295
Query 76159 CAGAAATTTTTATCCCGTTGAGACTGCGCGA-AAGTCTAATATGCGACACAGACCTATTG 76217
| || || || |||| || | ||| |||| || | ||| ||||| || || |
Sbjct 1296 GATTAACTTCTA-CCCGGTGCCCGAGGCCGATCAGTCCAACAAGCGCCACAGGCCGATCG 1354
Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAG 76277
|| | || || || || || || || | || || || || ||| | |||||
Sbjct 1355 GTATCGGCGTCCAGGGCCTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCC 1414
Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337
|| ||| || | |||| | |||||||| ||||| || |||| |||||||||
Sbjct 1415 CCGAGGCCCAGCTGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGG 1474
Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397
| || || ||| |||| | | | || |||| || || | |||| ||||| |||
Sbjct 1475 CCAGCTGCGAACTGGCCGCCGAGCTGGGCCCCTACGACACGTACGAGG---CTCCCCCGT 1531
Query 76398 C-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACT 76454
| |||||| | || |||| || ||||||| || || || | | | | ||||
Sbjct 1532 CAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACCGACCTGTGGGACT 1590
Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514
|| | | || ||||| ||| || | || | | ||||| || || |||| |
Sbjct 1591 GGAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCC 1650
Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574
| ||||| || ||||||||||| || ||| |||| || || || | | | || | ||||
Sbjct 1651 CGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACA 1710
Query 76575 CAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACC 76634
| | ||||||||| | | ||| |||| ||||| || |||||| || |
Sbjct 1711 CCAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGTCAACCCCCATC 1770
Query 76635 TCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681
| |||| ||||| | | ||| || || ||| | |||| ||||||
Sbjct 1771 TGCTCAAGGACCTGACGGAGAGAGGGCTGTGGGGCGAGGAGATGAAG 1817
>seq504380
Length=601
Score = 96.9 bits (106), Expect = 4e-15
Identities = 201/293 (69%), Gaps = 15/293 (5%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|||||||| || || ||| | | ||| ||||||| || |||||| | || || || |||
Sbjct 291 CCAGGTACCGGTAAAACCTTGTTAGCCAGAGCCATTGCTGGTGAAGCTAAAGTGCCGTTC 232
Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
|| || | ||| | | | ||||| ||||||||||| ||||| |||||| | | ||
Sbjct 231 TTCTCAAT-CTCAGGTTCTGATTTTGTTGAGATGTTTGTCGGTGTCGGTGCCTCACGTGT 173
Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCA----ACCATGTATTGTCTTCATTGATG 175489
|||||| | || ||| | || |||| | || ||||| |||| |||||||
Sbjct 172 ACGCGATATGTTCGAA----CAGGCTAAAAAGAGCGCGCCTTGTATCATCTTTATTGATG 117
Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGAGA 175548
| ||||||||||| || || || || ||||| | || | ||||| ||| |
Sbjct 116 AAATTGATGCGGTCGGTCGTCATCGTGGCTCTGGT-ATGGGCGGTGGTAATGATGAGCGT 58
Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATGA 175598
|| || ||| | || ||| || | ||| |||||||| ||||| ||||||
Sbjct 57 GAGCAGACACTGAACCAATTATTGGTCGAAATGGATGGTTTTGAAGGCAATGA 5
>seq28532
Length=8763
Score = 82.4 bits (90), Expect = 9e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136
|||||| || | || ||||| |||||||| |||||||||||||| || ||| ||
Sbjct 1813 GAGCGCATTGTGGCTTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCGTTCGCTGCC 1872
Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196
|| | |||| |||||||| | || | ||||| || || |||||| ||||| || |||
Sbjct 1873 ATCTTTTGGCTGAAGAAGAGAGGCTTAATGCCCGGGCTTACCTTCTCCAATGAGCTGATT 1932
Query 65197 TCCCGAGATGAGG 65209
| | |||||||
Sbjct 1933 AGCAGGGATGAGG 1945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592650868525760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |