Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq44246 167 3e-36 seq504380 96.9 4e-15 seq28532 82.4 9e-11 >seq44246 Length=4029 Score = 167 bits (184), Expect = 3e-36 Identities = 652/1007 (65%), Gaps = 26/1007 (3%) Strand=Plus/Plus Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGG 75743 ||||||||||| | | ||||||| || ||||| ||||||||| |||| ||| | Sbjct 826 AGAGATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGCAAC 885 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGT 75802 || | |||||||| | ||||| | || || || || ||| || | ||| Sbjct 886 CAGGAC--TGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGG- 942 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTA 75862 ||||||||||| |||||||| | ||||| |||||| | | ||| ||| || Sbjct 943 GAGGAGTTTGAGAAGCTCTACACCCAATATGAGCGGGAGGGCCGGGTCAA-GCGTGTGGT 1001 Query 75863 CCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 || | | | | || ||| | || || || | || ||||||||| | || || || || Sbjct 1002 GAAGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACGCCGTA 1061 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 ||||| ||||| || || || |||| |||||| ||||| |||| ||||||| ||||| Sbjct 1062 CATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAA 1121 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 | || || || ||||||||||| | || ||| | | |||||| ||||| || Sbjct 1122 GTGCAGCAACCTCTGCACGGAAATCGTTGAATACTCCAGTGGCGATGAGGTCGCTGTGTG 1181 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 ||| |||| || ||||| || | ||| |||| ||| || |||||||| | Sbjct 1182 TAATCTGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAG---CGGACTTTTGACTT 1238 Query 76102 TGAAAAACTTCA---TGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 | ||||| | || | || | ||| || || || || ||| |||| || Sbjct 1239 CAAGAAACTGGAGTCTGTGACCAAAGTGATCGT---GAAGAACCTGAACAAGATCATAGA 1295 Query 76159 CAGAAATTTTTATCCCGTTGAGACTGCGCGA-AAGTCTAATATGCGACACAGACCTATTG 76217 | || || || |||| || | ||| |||| || | ||| ||||| || || | Sbjct 1296 GATTAACTTCTA-CCCGGTGCCCGAGGCCGATCAGTCCAACAAGCGCCACAGGCCGATCG 1354 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAG 76277 || | || || || || || || || | || || || || ||| | ||||| Sbjct 1355 GTATCGGCGTCCAGGGCCTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCC 1414 Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337 || ||| || | |||| | |||||||| ||||| || |||| ||||||||| Sbjct 1415 CCGAGGCCCAGCTGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGG 1474 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 | || || ||| |||| | | | || |||| || || | |||| ||||| ||| Sbjct 1475 CCAGCTGCGAACTGGCCGCCGAGCTGGGCCCCTACGACACGTACGAGG---CTCCCCCGT 1531 Query 76398 C-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC-TCAACTACGACT 76454 | |||||| | || |||| || ||||||| || || || | | | | |||| Sbjct 1532 CAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACCGACCTGTGGGACT 1590 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 || | | || ||||| ||| || | || | | ||||| || || |||| | Sbjct 1591 GGAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCC 1650 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 | ||||| || ||||||||||| || ||| |||| || || || | | | || | |||| Sbjct 1651 CGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACA 1710 Query 76575 CAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACC 76634 | | ||||||||| | | ||| |||| ||||| || |||||| || | Sbjct 1711 CCAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGTCAACCCCCATC 1770 Query 76635 TCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 | |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 1771 TGCTCAAGGACCTGACGGAGAGAGGGCTGTGGGGCGAGGAGATGAAG 1817 >seq504380 Length=601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 201/293 (69%), Gaps = 15/293 (5%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || || ||| | | ||| ||||||| || |||||| | || || || ||| Sbjct 291 CCAGGTACCGGTAAAACCTTGTTAGCCAGAGCCATTGCTGGTGAAGCTAAAGTGCCGTTC 232 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | ||| | | | ||||| ||||||||||| ||||| |||||| | | || Sbjct 231 TTCTCAAT-CTCAGGTTCTGATTTTGTTGAGATGTTTGTCGGTGTCGGTGCCTCACGTGT 173 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCA----ACCATGTATTGTCTTCATTGATG 175489 |||||| | || ||| | || |||| | || ||||| |||| ||||||| Sbjct 172 ACGCGATATGTTCGAA----CAGGCTAAAAAGAGCGCGCCTTGTATCATCTTTATTGATG 117 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGAGA 175548 | ||||||||||| || || || || ||||| | || | ||||| ||| | Sbjct 116 AAATTGATGCGGTCGGTCGTCATCGTGGCTCTGGT-ATGGGCGGTGGTAATGATGAGCGT 58 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATGA 175598 || || ||| | || ||| || | ||| |||||||| ||||| |||||| Sbjct 57 GAGCAGACACTGAACCAATTATTGGTCGAAATGGATGGTTTTGAAGGCAATGA 5 >seq28532 Length=8763 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 |||||| || | || ||||| |||||||| |||||||||||||| || ||| || Sbjct 1813 GAGCGCATTGTGGCTTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCGTTCGCTGCC 1872 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | |||| |||||||| | || | ||||| || || |||||| ||||| || ||| Sbjct 1873 ATCTTTTGGCTGAAGAAGAGAGGCTTAATGCCCGGGCTTACCTTCTCCAATGAGCTGATT 1932 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 1933 AGCAGGGATGAGG 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592650868525760