Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq509954 141 1e-28 seq24926 87.8 2e-12 >seq509954 Length=433 Score = 141 bits (156), Expect = 1e-28 Identities = 222/318 (70%), Gaps = 0/318 (0%) Strand=Plus/Plus Query 115785 TTGCTCAGGACCTGAAGGCGATTCACGGTCTGGATGCTGAAACTGAACTGTCCAACATCC 115844 |||||||||| |||| || | || || |||| || ||| ||||| | || || | Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 115845 TCAGCACAGAGATTCTTGCTGAAATCAACCGTGAAGTTGTTCGTACCGTCTACACCAACG 115904 | || || |||||||| ||||| |||||||| | |||||||||| || | | | Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 115905 CTGTTGCTGGTGCTCAGAACAACACCGCAACTGCTGGTGTCTTCGACCTCGACGTTGACT 115964 | ||||||| || | | |||| |||||| ||||||| | ||||| || Sbjct 121 CAAAACCTGGTGCACAAACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGATG 180 Query 115965 CCAACGGTCGCTGGTCTGTTGAGAAGTTCAAGGGTCTCCTGTTCCAGATCGAAAGAGATG 116024 | || ||||||||||| || || || ||||| || || ||||||| || ||| | |||| Sbjct 181 CAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGATG 240 Query 116025 CTAACGCTATCGGTCAGCAAACTCGTCGCGGGAAGGGCAACATCCTGATCTGTTCTGCTG 116084 ||||| |||| | | |||| | || || || || ||| | | |||||||| ||| Sbjct 241 CTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCTG 300 Query 116085 ACGTTGCTTCTGCACTGG 116102 |||| ||||||||| ||| Sbjct 301 ACGTAGCTTCTGCATTGG 318 >seq24926 Length=5984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 161243 CAGTAGCTCAGC-GGATAGAGCAACCGCCTTCTAAGCGGTTGGTCGCAGGTTCAAATCCT 161301 ||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |||||| Sbjct 5765 CAGTAGCTCAGTTGGATAGAGCACCCGCCTTCTAAGCGGGTGGTCGCAGGTTCGAATCCT 5824 Query 161302 GCC 161304 ||| Sbjct 5825 GCC 5827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557561288168800