Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_020862.2 Length=74485 Score E Sequences producing significant alignments: (Bits) Value seq512587 123 1e-23 seq255804 123 1e-23 seq505100 100 1e-16 seq486019 93.3 2e-14 seq488807 91.5 7e-14 seq501064 89.7 2e-13 seq386449 82.4 4e-11 >seq512587 Length=355 Score = 123 bits (136), Expect = 1e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35338 AATATCTGGCATGTGTTCCCCAAAGTACCCGTGTGCTCGTAGACAGTGACCATCATAACC 35397 |||||||||||| | ||| ||||| | |||||||||||||||||||||||||| Sbjct 333 AATATCTGGCATCATATGCCCGAAGTAAGAATAGGCTCGTAGACAGTGACCATCATAACC 274 Query 35398 ATCGGTGTAGACCTTTAGTTTTTCAGGATCACGAGTCGTCAAAGCTGAGATACGATCCTC 35457 ||||||||| |||||||| || | ||||||||||| || | |||||| || | ||| || Sbjct 273 ATCGGTGTACACCTTTAGCTTATTTGGATCACGAGTTGTTAGAGCTGAAATTCTATCTTC 214 Query 35458 TAGGGAATCAAAATCCAGACCAACAAATAACCATCCAGAAGGTGCTTCAAAGCATTGCTT 35517 || || ||| || ||| | ||| ||| || |||||| | ||| || |||| Sbjct 213 TAAAGATGAAAAGTCTGCGCCAGCCCATATCCAACCTTTAGGTGCCTTAAAACAACGCTT 154 Query 35518 GATCAGCTTAGCA 35530 || |||||||| Sbjct 153 AATATGCTTAGCA 141 >seq255804 Length=3791 Score = 123 bits (136), Expect = 1e-23 Identities = 389/589 (66%), Gaps = 14/589 (2%) Strand=Plus/Minus Query 1409 GGTACTCCCTTTAACAAGGAAGACATCGTTT--ATCAGGCTATTGAATCTGGTGCATGGG 1466 |||||||||||||| | || || ||| || | ||||| |||||||||||||||| Sbjct 2391 GGTACTCCCTTTAATGCTAATGA--TCCTTTGTATGAAGCTATGGAATCTGGTGCATGGG 2334 Query 1467 AGGTCAACGTCTGGCCTGTATGTAAGCAATTCCCATGTTCTGAAAAGGATTTCTCAGGTG 1526 | || | || | ||| ||||| || | || || ||| || | | || || ||| | Sbjct 2333 ATGTAAGTGTATATCCTATATGTGAGAAGTTTCCTTGTACTAGAGAAGAGTTTAAAGGAG 2274 Query 1527 CTTGGGATGACCGATTCAAATATGATTACGTCAAAGAGATGTACGACTCTGCTGTAAAAG 1586 | ||||| || || || | ||||| || || ||| |||||| | || || Sbjct 2273 CATGGGAGGATCGCTTTGATTATGACTATGTAGAAGCTATGTACCAAGAGGCACTAGCTC 2214 Query 1587 AAGGTAAGCTCAATAACTTCAGACAAGAGCTTATGCTTCGCATTACATCTGATGAAGCTC 1646 |||||| | | ||| ||| |||||||||||||| | |||| |||||||| | | Sbjct 2213 AAGGTATGGTGAATGGTTTCTATCAAGAGCTTATGCTACAAATTATGTCTGATGAGGATA 2154 Query 1647 GTTTGGTTCAAGAGGCTGATATTGGTTGGTATTCCAGACAGCACATCCTCAAGAACAAAG 1706 | || || || | |||| | | |||| | | | || || | | | || || Sbjct 2153 GATTAGTAGTTGATGGTGATTTAAGATGGTTTACTTTAAAGAACCTGATGGATAATAAGA 2094 Query 1707 AGAAGTATAACTTCTACATCACCACTGACTTTGCCACATCATCCAGA-CAAACTGCTGAC 1765 | || | ||| ||||| || || ||||||||||| || | | | | ||| |||||||| Sbjct 2093 ATAACTTTAATTTCTATATTACTACTGACTTTGCTAC-TAGTGAAAAGCAATCTGCTGAC 2035 Query 1766 -TACTCTGTGTT-GTCAGTATGGGCTTATGATCATCTTGGTACATGGCACTGGGTAGATG 1823 | || | || || || |||||| | || || |||| | |||||||||| Sbjct 2034 TTTAGCTTTATTAGT--GTTTGGGCTGTTAATAATAAAGGTAATTACTTTTGGGTAGATG 1977 Query 1824 GTGTCTGTGAACGTCAGACTATGGATAAATCCATTGATGACCTTTTCAGATTGGTTCAGG 1883 | | ||| | | ||||| |||||||| ||||||||| || ||| || | | Sbjct 1976 GAATATGTAAGAGACAGACCATGGATAAGAACATTGATGATCTGTTCTTGTTTTCTAATA 1917 Query 1884 AATACAATCCACAAAGCA-CAGGTGTTGAGATTACAGGTCAACAAGGTGGCTTCATCCAA 1942 | || || ||| | || |||| ||||| | ||||||||||||| || || || | Sbjct 1916 AGTATAAGCCA-ATGTCAGTAGGTATTGAGGTATCAGGTCAACAAGGAGGATTTATTCCT 1858 Query 1943 TGGATTCAAAGGGAGATGGATTAC-CGAGGTATCTATTTCAATTTGGCT 1990 |||||| ||| || || ||| || || |||||||||| |||||| Sbjct 1857 TGGATTGAAAAAGAAAT-GATGACACGTAATATCTATTTCTTATTGGCT 1810 >seq505100 Length=723 Score = 100 bits (110), Expect = 1e-16 Identities = 310/468 (66%), Gaps = 20/468 (4%) Strand=Plus/Minus Query 1286 ATGGATGACTTGATTTCAGATGCTGATTCCAAGTCTCCTACTGCGATGGAAGCTATCAAC 1345 |||||||||||| || | | ||||| | || |||||||| || || |||| || Sbjct 472 ATGGATGACTTGGTTAGTAACGAAGATTCAAGATCACCTACTGCTATTCAATCTATTAAG 413 Query 1346 GATACTGTCTACTCTGG-TGTTCAGTATGCTCTCGACCCTAC-ACGTC----ACAAGATG 1399 ||||| || | || || | || ||||||| | |||| || | ||| | || ||| Sbjct 412 GATACAGT-TGGTCAGGCTATTAAGTATGCGTTACACCCAACTAAGTCTAAGAGAATATG 354 Query 1400 GTTTTGAACGGTACTCCCTTTAACAAGGAAGACATCGTTTAT--CAGGCTATTGAATCTG 1457 | || |||||||||||||| | || || ||||| || |||||||| |||| Sbjct 353 GCTT-----GGTACTCCCTTTAATGCTAACGA--TCCTTTATATCAAGCTATTGAGTCTG 301 Query 1458 GTGCATGGGAGGTCAACGTCTGGCCTGTATGTAAGCAATTCCCATGTTCTGAAAAGGATT 1517 |||| ||||| || || | || |||||| || | || || ||| ||| || | Sbjct 300 GTGCTTGGGATGTAGGTGTTTATCCAGTATGTGAGAAGTTTCCTTGTGAGGAATCAGAGT 241 Query 1518 TCTCAGGTGCTTGGGATGACCGATTCAAATATGATTACGTCAAAGAGATGTACGACTCTG 1577 | ||| || ||||||||||| || || || || || | ||||||||| Sbjct 240 TTAAAGGCGCATGGGATGACCGCTTTGGTTACGAGTATGTTAGTACGATGTACGAAGAGT 181 Query 1578 CTGTAAAAGAAGGTAA-GCTCAATAACTTCAGACAAGAGCTTATGCTTCGCATTACATCT 1636 |||| |||||||| ||| || ||| |||||||||||||| | |||| | Sbjct 180 CTGTTGCTGAAGGTAACGCT-GATGGTTTCTACCAAGAGCTTATGCTACAGATTATGAGT 122 Query 1637 GATGAAGCTCGTTTGGTTCAAGAGGCTGATATTGGTTGGTATTCCAG-ACAGCACATCCT 1695 || |||| | | | || || || |||| | |||||| ||| | || || | || Sbjct 121 GAAGAAGATAGACTTGTACATGATAGTGATTTGCAGTGGTATAACAGTAGAG-ACTTGCT 63 Query 1696 CAAGAACAAAGAGAAGTATAACTTCTACATCACCACTGACTTTGCCAC 1743 || || ||||| || | |||||| || || | ||||||||||| || Sbjct 62 GAATAAGAAAGATAACTTTAACTTTTATATTGCTACTGACTTTGCAAC 15 >seq486019 Length=823 Score = 93.3 bits (102), Expect = 2e-14 Identities = 314/483 (65%), Gaps = 12/483 (2%) Strand=Plus/Minus Query 1267 TCGTCCTGTACTAGCAGTTATGGATGACTTGATTTCAGATGCTGATTCCAAGTCTCCTAC 1326 |||||| || || || || | |||||||| || || |||| ||| | | ||| |||| Sbjct 557 TCGTCCAGTGCTTGCTGTACTAGATGACTTAATATCGGATGAAGATGCGAGGTCAGCTAC 498 Query 1327 TGCGATGGAAGCTATCAACGATACTGTCTACTCTGGTGTTCAGTATGCTCTCGACCCTAC 1386 | || ||| | | ||||| || ||| | | || | || || | ||||| | Sbjct 497 AGTTATTTCTGCTGTAGAAGATACAGTGTACAAGGCTATTGACTACGCATTAGACCCAAT 438 Query 1387 ACGTCACAAGATGGTTTTGAACGGTACTCCCTTTAACAAGGAAGACATCGTTTATC--AG 1444 ||| ||| | | | | ||||||||||||||| | || || |||| | Sbjct 437 ACGCTCTAAGGTAATCTGGTCAGGTACTCCCTTTAACTCGCGTGA--TCCATTATACAAA 380 Query 1445 GCTATTGAATCTGGTGCATGGGAGGTCAACGTCTGGCCTGTATGTAAGCAATTCCCATGT 1504 || |||| |||||||| |||| || ||||| | ||||| ||| | || || ||| Sbjct 379 GCAGTTGAGTCTGGTGCTTGGGCAGTTAACGTGTACCCTGTGTGTGCTAATTTTCCTTGT 320 Query 1505 TCTGAAAAGGATTTCTCAGGTGCTTGGGATGACCGATTCAAATATGATTACGTCAAAGAG 1564 || || || || |||||| ||| ||| || ||| |||| | | || ||| Sbjct 319 GAAGAGAAAGACTTTAGAGGTGCGTGGCCTGATCGTTTCTCATATCAATTTGTTTTAGAC 260 Query 1565 ATGTACGACTCT-GCTGTAAAAGAAGGTAAGCTCAATAACTTCAGACAAGAGCTTATGCT 1623 | ||| ||| ||| | || | ||||||| | ||| || | |||||||||||| | Sbjct 259 AAATAC-ACTAAAGCTTTTAAGGCAGGTAAGGTGGATACATTTAACCAAGAGCTTATGTT 201 Query 1624 TCGCATTACATCTGATGAAGCTCGTTTGGTTCAAGAGGCTGATATTGGTTGGTATTCCAG 1683 || || | || || || | |||| | ||||||| ||||||| ||||| ||| Sbjct 200 ACGAATCATGTCAGACGAGGATCGTCTAATTCAAGATTGTGATATTAACTGGTA---CAG 144 Query 1684 AC---AGCACATCCTCAAGAACAAAGAGAAGTATAACTTCTACATCACCACTGACTTTGC 1740 || ||| | | || || |||| |||| |||||||| || || ||||||||||| Sbjct 143 ACATGAGCTTGTATTAAAAAATAAAGGTAAGTTCAACTTCTATATAACAACTGACTTTGC 84 Query 1741 CAC 1743 || Sbjct 83 AAC 81 >seq488807 Length=774 Score = 91.5 bits (100), Expect = 7e-14 Identities = 297/449 (66%), Gaps = 18/449 (4%) Strand=Plus/Plus Query 1449 TTGAATCTGGTGCATGGGAGGTCAACGTCTGGCCTGTATGTAAGCAATTCCCATGTTCTG 1508 |||| || || || ||| | || || || | ||||| ||| || |||| || ||| | Sbjct 101 TTGAGTCAGGAGCTTGGTACGTAAATGTGTACCCTGTGTGTGAGAAATTTCCTTGTACGA 160 Query 1509 AAAAGGATTTCTCAGGTGCTTGGGATGACCGATTCAAATATGATTACGTCAAAGAGATGT 1568 | | || ||| ||| | ||| ||| || |||| ||||| || || | || | Sbjct 161 GAGAAGAGTTCAAAGGCTCATGGCCTGATCGCTTCACGTATGACTATGTAATGAAGCAAT 220 Query 1569 ACGACTCTGCTGTAAAAGAAGGTAAGCTCAATAACTTCAGACAAGAGCTTATGCTTCGCA 1628 || | ||||| |||| ||||||| | || || | |||||| | ||||| | | Sbjct 221 ACACCAAAGCTGTTAAAGCAGGTAAGGTGGATTCTTTTAACCAAGAGTTGATGCTAAGAA 280 Query 1629 TTACATCTGATGAAGCTCGTTTGGTTCAAGAGGCTGATATTGGTTGGTATTCCAGACA-G 1687 ||| || || |||| | || || |||| ||| ||| |||||| | | | | Sbjct 281 TTATGTCAGAAGAAGACAGATTAATTAAAGATAGTGAGATTAATTGGTACGCACGTAATG 340 Query 1688 CACATCCTCAAGAACAAAGAGAAGTATAACTTCTACATCACCACTGACTTTGCCACATCA 1747 ||| || | |||| ||||| ||| |||||||||||||| || || ||||| || | Sbjct 341 CACTTCTT-AAGAGTAAAGACGCGTACAACTTCTACATCACTACGGATTTTGCAACCT-- 397 Query 1748 TCCAGACAAA-CTGCTGACTACTCT---GTGTTGTCAGTATGG--GCTTATGATCATCTT 1801 | || ||| ||| | ||| | || | || |||||| ||||| | ||| | Sbjct 398 --CTGAAAAAGAGGCTAGCGACTTTAGCGTAATATCTGTATGGGCGCTTA-GCTCA-GAT 453 Query 1802 GGTACATGGCACTGGGTAGATGGTGTCTGTGAACGTC-AGAC-TATGGATAAATCCATTG 1859 ||||| ||| ||||||||| ||| | || || | | |||| | | |||| ||||| Sbjct 454 GGTACGTGGTTCTGGGTAGACGGTATTTGCGAGCAACAAGACATGTCCGTAAA--CATTG 511 Query 1860 ATGACCTTTTCAGATTGGTTCAGGAATAC 1888 ||||| | || |||||||||||| |||| Sbjct 512 ATGACTTGTTTAGATTGGTTCAGATATAC 540 >seq501064 Length=301 Score = 89.7 bits (98), Expect = 2e-13 Identities = 108/145 (74%), Gaps = 8/145 (6%) Strand=Plus/Plus Query 69866 CTTGAACTCTGGACCCCCCGATTAAAAGTCGGGTGCTCTAACCAACTGAGCTAACGGCGC 69925 ||||||| ||| | | |||||| |||| | ||||||| ||||||||||||| | | Sbjct 158 CTTGAACCAGCGACACACGGATTAACAGTCCGTTGCTCTA-CCAACTGAGCTAAAGAGG- 215 Query 69926 AAACAAAGTTTAGTATTGG-----ATACTGGACTTGAACCAGTGACACACGGGTTATCGG 69980 || || |||| | | | | ||||| || ||||||| ||||||||| ||| | | Sbjct 216 -AATTAACTTTAATGTGGCTCCCCAAACTGGGCTCGAACCAGGGACACACGGATTAACAG 274 Query 69981 CCCGTTGCTCTACCATCTGAGCTAA 70005 |||||||||||||| ||||||||| Sbjct 275 TCCGTTGCTCTACCAACTGAGCTAA 299 >seq386449 Length=539 Score = 82.4 bits (90), Expect = 4e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 69849 TGGTGTGCCGTCAGAGACTTGAACTCTGGACCCCCCGATTAAAAGTCGGGTGCTCTAACC 69908 ||||| ||| || ||||||||||| ||||| ||||||| |||||| |||||||||| Sbjct 70 TGGTGGGCCTTCCCAGACTTGAACTGGGGACCTGCCGATTATGAGTCGGATGCTCTAACC 129 Query 69909 AACTGAGCTAACGGCGCA 69926 ||||||||||| ||| || Sbjct 130 AACTGAGCTAAAGGCCCA 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236701460646212