Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021067.1 Length=135982 Score E Sequences producing significant alignments: (Bits) Value seq382105 127 2e-24 seq139160 120 3e-22 seq502529 98.7 9e-16 seq72118 96.9 3e-15 seq520781 95.1 1e-14 >seq382105 Length=334 Score = 127 bits (140), Expect = 2e-24 Identities = 231/334 (69%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 3051 TAAATCCTCTTCCAGTGTAACCCCATCCCACTCACAAGT-AAAGCCTTCATAACCCGTAC 3109 ||| |||||||| | || || || ||||| | ||| ||| |||| || || | || Sbjct 333 TAAGTCCTCTTCAATAGTTACACCTTCCCAATTACATTCGAAATCCTTTGTAGCCAGCAC 274 Query 3110 CCGTCTTACGATCTGTTCTGGCAAGAGCATACTCATCTCCGGTTTCTGGATGTAAGAATA 3169 | | |||||| || || | || || ||||| ||||| ||| | || |||| |||| Sbjct 273 CAGACTTACGTTCAGTACGAGCTAGGGCATATTCATCCTTTGTTACAGGGTGTAGAAATA 214 Query 3170 CGGGAAAGTCTTTACCTACCTGCTTGAAACCTAACGACAACATTTCCTC--TGGACTACT 3227 | ||||| ||| ||| || | ||||| || | || ||||||||||| |||| ||| Sbjct 213 CAGGAAAATCTGCACCAACTTTATTGAAGCCAAGTGATAACATTTCCTCAGTGGA--ACT 156 Query 3228 CCCAACCACAACATAATCTTTATCTTTAGGGATCTTACCCATGAAGTGGTCACGAACAAA 3287 || || || |||||||| ||||||||||| || || | |||| | ||||| ||||| Sbjct 155 ACCCACAACTACATAATCCTTATCTTTAGGTATTACTCCTAAGAAGCGATCACGTACAAA 96 Query 3288 ACCTCCAACCAAGTATATTGTGGCATTTTTAAAATC------TCCATGAACACCCATAAT 3341 ||||| || | ||| ||||| | || | ||||| ||| || | || |||||| Sbjct 95 TCCTCCTACAAGGTAGATTGTCACTTTACTGAAATCAAAGTTTCCGTGTATACTCATAAT 36 Query 3342 AT-TTCTCCTCCTCTTTAAGTTACAACCACTATA 3374 | || ||||| | || || ||||| |||| Sbjct 35 TTATTATCCTCTTGGTTTGTGTAGAACCAATATA 2 >seq139160 Length=2870 Score = 120 bits (132), Expect = 3e-22 Identities = 240/352 (68%), Gaps = 14/352 (4%) Strand=Plus/Plus Query 2904 GCGTAAGGGATCTTCTTTAAATGCATCCGACACGGGACGTAACATTTTATTTTTAATATC 2963 |||||| |||||||| |||| ||||| ||||| | || | |||||| |||||||| Sbjct 853 GCGTAAAGGATCTTCAGTAAAGGCATCTGACACATGGCGAAGTATTTTAGCGTTAATATC 912 Query 2964 TCCCCTTCCATTGAAAGGGTCGTACACTTTACCAAGGTTTCGTGAACAATCCCAAGCAAT 3023 | | | || | ||| ||||| | | ||| || |||| || || || || Sbjct 913 TGCGATACCGTGGAACGGGTC-----CGT---CAATGTGCCGTGCTCA-TCTTGTGCGAT 963 Query 3024 TGCATTGATGGTTAGATCACGTCTACGTAAATCCTCTTCCAGTGTAACCCCATCC----C 3079 ||||| ||||||| |||||| | ||| || || || || || | | | Sbjct 964 GGCATTAATGGTTAAATCACGGCGTAATAAGTCTTCGGTGAGGGTGACATCTTTGTTGGC 1023 Query 3080 ACTCACAAGTAAAGCCTTCATAACCCGTACCCGTCTTACGATCTGTTCTGGCAAGAGCAT 3139 | |||||| |||| |||| ||| || ||| || || || ||||||||||| || || | Sbjct 1024 A-TCACAACTAAAACCTTGATAGCCATAACCGGTTTTCCGTTCTGTTCTGGCTAGTGCGT 1082 Query 3140 ACTCATCTCCGGTTTCTGGATGTAAGAATACGGGAAAGTCTTTACCTACCTGCTTGAAAC 3199 | || | |||| || ||||| || || |||||||||||||| || |||| ||| Sbjct 1083 ATTCTTGCTGAGTTTTAGGGTGTAAAAAAACAGGAAAGTCTTTACCGACTTGCTGATAAC 1142 Query 3200 CTAACGACAACATTTCCTCTGGACTACTCCCAACCACAACATAATCTTTATC 3251 | || | | |||||| ||| || || ||||| || |||||||||||||| Sbjct 1143 CCAATGCGAGCATTTCTTCTACGCTGCTGCCAACAACCACATAATCTTTATC 1194 >seq502529 Length=487 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/187 (73%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 3018 AGCAATTGCATTGATGGTTAGATCACGTC-TACGTAAATCCTCTTCCAGTGTAACCCCAT 3076 ||| |||||||||||||| ||||| |||| | || | ||| ||||| | | || | | Sbjct 472 AGCTATTGCATTGATGGTGAGATCGCGTCGTGCG-AGATCATCTTCTAAACTGACATCTT 414 Query 3077 --CCCAC-TCACAAGTAAAGCCTTCATAACCCGTACCCGTCTTACGATCTGTTCTGGCAA 3133 ||| | | || |||| ||| |||||| | || ||| || |||||||| || | Sbjct 413 GACCCGCGTAGCAGCTAAAACCTGTATAACCAATCCCTTGCTTGCGCTCTGTTCTTGCCA 354 Query 3134 GAGCATACTCATCTCCGGTTTCTGGATGTAAGAATACGGGAAAGTCTTTACCTACCTGCT 3193 | ||||| || ||||| |||| |||||||| ||||| || |||||||| ||||| || | Sbjct 353 GTGCATATTCTTCTCCTGTTTTAGGATGTAAAAATACTGGGAAGTCTTTGCCTACTTGAT 294 Query 3194 TGAAACC 3200 |||| || Sbjct 293 TGAAGCC 287 >seq72118 Length=817 Score = 96.9 bits (106), Expect = 3e-15 Identities = 224/336 (67%), Gaps = 34/336 (10%) Strand=Plus/Plus Query 8504 CTCGTGGTGGTGACCGTAACTTCGCTGGTGACGATCAAGCACAAAAAGAAAGCTTCCGTA 8563 ||||||||| ||||||||| | || ||| | ||| | | | ||||| | |||| Sbjct 291 CTCGTGGTGCTGACCGTAATTATGCGGGTCAAGATAACTCTCGTAAAGAGATGTTCCCAG 350 Query 8564 TTCCTTTCTTCCCACTAGATAAAGTGACTACTCCTGCAGAAGTTCAAGGCTTCCGTCAAT 8623 |||| |||||||| |||||| || ||| |||||||| || | ||||||| || Sbjct 351 TTCCATTCTTCCCTCTAGATGCTAAGATTACCCCTGCAGATGTATTAAACTTCCGT--AT 408 Query 8624 GG--GGTACTGAGGATGCACCTGCTAACG------TTGAGACTCTAGTTAATCGTCGTGT 8675 | |||||||| | || |||||| | |||| | |||| || ||||| Sbjct 409 GATTGGTACTGAA-----AGCT-CTAACGAAACAATCGAGAATAAAGTTCGTCAACGTGT 462 Query 8676 TGAGCGTATCCAACGTTCTCATGCTAAACTTCGTCGTGATGCATTCTACACAGCTCTTGT 8735 || | |||||||||||| |||||| |||| |||| | ||| | |||| |||||||| Sbjct 463 TGGTCATATCCAACGTTCACATGCTGAACTAGTTCGTAAAGCAATGTACAAGGCTCTTGT 522 Query 8736 TTCTAA----------CAA--GGTTCACGCTAAGAAAGGTGGCGTAGATACTGCACTTGC 8783 ||||| ||| | || | |||| ||| |||| | | || Sbjct 523 ATCTAACTCTACTTACCAACCGATTGATGCTA------TTGGTACAGATGGTCCTGATGT 576 Query 8784 TAAGAACTTCTCTACAGTTTGGGGTGGTGCTCGTAA 8819 |||||||||||| ||||| ||||||| | ||||||| Sbjct 577 TAAGAACTTCTCAACAGTATGGGGTGCTCCTCGTAA 612 >seq520781 Length=281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 11497 AACAATGACTCCTTTTGGTTTAATGATACGCTTTAATTGCTCCCACATTGCATCAAGTGG 11556 |||||| | || || ||||||||||||||||| ||||| ||||||||| ||| | Sbjct 171 AACAATAGCACCATTAGGTTTAATGATACGCTTCAATTGGTCCCACATTAAATCTAAATC 112 Query 11557 AATAACCGAATCCCATTTATTTCGAGTTGTA---CCATAAGGTGGATCGGTTAAAATCAT 11613 |||||| |||||||| || | || |||| ||||| || || || || || ||||| Sbjct 111 AATAACTGAATCCCACTTG---CAAGCTGTAGTGCCATATGGAGGGTCTGTCAATATCAT 55 Query 11614 ATCAATTGAACCGTCAGGAATACCTTTCATCACTTCTAGACAATCACCTTTCAT 11667 | || || ||||| || ||||||| |||| |||||||||||||| Sbjct 54 AGAAACGCCTCCATCAGGGATTTCTTTCATTCGCTCTAAGCAATCACCTTTCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432231505582946