Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_021067.1
Length=135982
Score E
Sequences producing significant alignments: (Bits) Value
seq382105 127 2e-24
seq139160 120 3e-22
seq502529 98.7 9e-16
seq72118 96.9 3e-15
seq520781 95.1 1e-14
>seq382105
Length=334
Score = 127 bits (140), Expect = 2e-24
Identities = 231/334 (69%), Gaps = 12/334 (4%)
Strand=Plus/Minus
Query 3051 TAAATCCTCTTCCAGTGTAACCCCATCCCACTCACAAGT-AAAGCCTTCATAACCCGTAC 3109
||| |||||||| | || || || ||||| | ||| ||| |||| || || | ||
Sbjct 333 TAAGTCCTCTTCAATAGTTACACCTTCCCAATTACATTCGAAATCCTTTGTAGCCAGCAC 274
Query 3110 CCGTCTTACGATCTGTTCTGGCAAGAGCATACTCATCTCCGGTTTCTGGATGTAAGAATA 3169
| | |||||| || || | || || ||||| ||||| ||| | || |||| ||||
Sbjct 273 CAGACTTACGTTCAGTACGAGCTAGGGCATATTCATCCTTTGTTACAGGGTGTAGAAATA 214
Query 3170 CGGGAAAGTCTTTACCTACCTGCTTGAAACCTAACGACAACATTTCCTC--TGGACTACT 3227
| ||||| ||| ||| || | ||||| || | || ||||||||||| |||| |||
Sbjct 213 CAGGAAAATCTGCACCAACTTTATTGAAGCCAAGTGATAACATTTCCTCAGTGGA--ACT 156
Query 3228 CCCAACCACAACATAATCTTTATCTTTAGGGATCTTACCCATGAAGTGGTCACGAACAAA 3287
|| || || |||||||| ||||||||||| || || | |||| | ||||| |||||
Sbjct 155 ACCCACAACTACATAATCCTTATCTTTAGGTATTACTCCTAAGAAGCGATCACGTACAAA 96
Query 3288 ACCTCCAACCAAGTATATTGTGGCATTTTTAAAATC------TCCATGAACACCCATAAT 3341
||||| || | ||| ||||| | || | ||||| ||| || | || ||||||
Sbjct 95 TCCTCCTACAAGGTAGATTGTCACTTTACTGAAATCAAAGTTTCCGTGTATACTCATAAT 36
Query 3342 AT-TTCTCCTCCTCTTTAAGTTACAACCACTATA 3374
| || ||||| | || || ||||| ||||
Sbjct 35 TTATTATCCTCTTGGTTTGTGTAGAACCAATATA 2
>seq139160
Length=2870
Score = 120 bits (132), Expect = 3e-22
Identities = 240/352 (68%), Gaps = 14/352 (4%)
Strand=Plus/Plus
Query 2904 GCGTAAGGGATCTTCTTTAAATGCATCCGACACGGGACGTAACATTTTATTTTTAATATC 2963
|||||| |||||||| |||| ||||| ||||| | || | |||||| ||||||||
Sbjct 853 GCGTAAAGGATCTTCAGTAAAGGCATCTGACACATGGCGAAGTATTTTAGCGTTAATATC 912
Query 2964 TCCCCTTCCATTGAAAGGGTCGTACACTTTACCAAGGTTTCGTGAACAATCCCAAGCAAT 3023
| | | || | ||| ||||| | | ||| || |||| || || || ||
Sbjct 913 TGCGATACCGTGGAACGGGTC-----CGT---CAATGTGCCGTGCTCA-TCTTGTGCGAT 963
Query 3024 TGCATTGATGGTTAGATCACGTCTACGTAAATCCTCTTCCAGTGTAACCCCATCC----C 3079
||||| ||||||| |||||| | ||| || || || || || | | |
Sbjct 964 GGCATTAATGGTTAAATCACGGCGTAATAAGTCTTCGGTGAGGGTGACATCTTTGTTGGC 1023
Query 3080 ACTCACAAGTAAAGCCTTCATAACCCGTACCCGTCTTACGATCTGTTCTGGCAAGAGCAT 3139
| |||||| |||| |||| ||| || ||| || || || ||||||||||| || || |
Sbjct 1024 A-TCACAACTAAAACCTTGATAGCCATAACCGGTTTTCCGTTCTGTTCTGGCTAGTGCGT 1082
Query 3140 ACTCATCTCCGGTTTCTGGATGTAAGAATACGGGAAAGTCTTTACCTACCTGCTTGAAAC 3199
| || | |||| || ||||| || || |||||||||||||| || |||| |||
Sbjct 1083 ATTCTTGCTGAGTTTTAGGGTGTAAAAAAACAGGAAAGTCTTTACCGACTTGCTGATAAC 1142
Query 3200 CTAACGACAACATTTCCTCTGGACTACTCCCAACCACAACATAATCTTTATC 3251
| || | | |||||| ||| || || ||||| || ||||||||||||||
Sbjct 1143 CCAATGCGAGCATTTCTTCTACGCTGCTGCCAACAACCACATAATCTTTATC 1194
>seq502529
Length=487
Score = 98.7 bits (108), Expect = 9e-16
Identities = 137/187 (73%), Gaps = 5/187 (3%)
Strand=Plus/Minus
Query 3018 AGCAATTGCATTGATGGTTAGATCACGTC-TACGTAAATCCTCTTCCAGTGTAACCCCAT 3076
||| |||||||||||||| ||||| |||| | || | ||| ||||| | | || | |
Sbjct 472 AGCTATTGCATTGATGGTGAGATCGCGTCGTGCG-AGATCATCTTCTAAACTGACATCTT 414
Query 3077 --CCCAC-TCACAAGTAAAGCCTTCATAACCCGTACCCGTCTTACGATCTGTTCTGGCAA 3133
||| | | || |||| ||| |||||| | || ||| || |||||||| || |
Sbjct 413 GACCCGCGTAGCAGCTAAAACCTGTATAACCAATCCCTTGCTTGCGCTCTGTTCTTGCCA 354
Query 3134 GAGCATACTCATCTCCGGTTTCTGGATGTAAGAATACGGGAAAGTCTTTACCTACCTGCT 3193
| ||||| || ||||| |||| |||||||| ||||| || |||||||| ||||| || |
Sbjct 353 GTGCATATTCTTCTCCTGTTTTAGGATGTAAAAATACTGGGAAGTCTTTGCCTACTTGAT 294
Query 3194 TGAAACC 3200
|||| ||
Sbjct 293 TGAAGCC 287
>seq72118
Length=817
Score = 96.9 bits (106), Expect = 3e-15
Identities = 224/336 (67%), Gaps = 34/336 (10%)
Strand=Plus/Plus
Query 8504 CTCGTGGTGGTGACCGTAACTTCGCTGGTGACGATCAAGCACAAAAAGAAAGCTTCCGTA 8563
||||||||| ||||||||| | || ||| | ||| | | | ||||| | ||||
Sbjct 291 CTCGTGGTGCTGACCGTAATTATGCGGGTCAAGATAACTCTCGTAAAGAGATGTTCCCAG 350
Query 8564 TTCCTTTCTTCCCACTAGATAAAGTGACTACTCCTGCAGAAGTTCAAGGCTTCCGTCAAT 8623
|||| |||||||| |||||| || ||| |||||||| || | ||||||| ||
Sbjct 351 TTCCATTCTTCCCTCTAGATGCTAAGATTACCCCTGCAGATGTATTAAACTTCCGT--AT 408
Query 8624 GG--GGTACTGAGGATGCACCTGCTAACG------TTGAGACTCTAGTTAATCGTCGTGT 8675
| |||||||| | || |||||| | |||| | |||| || |||||
Sbjct 409 GATTGGTACTGAA-----AGCT-CTAACGAAACAATCGAGAATAAAGTTCGTCAACGTGT 462
Query 8676 TGAGCGTATCCAACGTTCTCATGCTAAACTTCGTCGTGATGCATTCTACACAGCTCTTGT 8735
|| | |||||||||||| |||||| |||| |||| | ||| | |||| ||||||||
Sbjct 463 TGGTCATATCCAACGTTCACATGCTGAACTAGTTCGTAAAGCAATGTACAAGGCTCTTGT 522
Query 8736 TTCTAA----------CAA--GGTTCACGCTAAGAAAGGTGGCGTAGATACTGCACTTGC 8783
||||| ||| | || | |||| ||| |||| | | ||
Sbjct 523 ATCTAACTCTACTTACCAACCGATTGATGCTA------TTGGTACAGATGGTCCTGATGT 576
Query 8784 TAAGAACTTCTCTACAGTTTGGGGTGGTGCTCGTAA 8819
|||||||||||| ||||| ||||||| | |||||||
Sbjct 577 TAAGAACTTCTCAACAGTATGGGGTGCTCCTCGTAA 612
>seq520781
Length=281
Score = 95.1 bits (104), Expect = 1e-14
Identities = 126/174 (72%), Gaps = 6/174 (3%)
Strand=Plus/Minus
Query 11497 AACAATGACTCCTTTTGGTTTAATGATACGCTTTAATTGCTCCCACATTGCATCAAGTGG 11556
|||||| | || || ||||||||||||||||| ||||| ||||||||| ||| |
Sbjct 171 AACAATAGCACCATTAGGTTTAATGATACGCTTCAATTGGTCCCACATTAAATCTAAATC 112
Query 11557 AATAACCGAATCCCATTTATTTCGAGTTGTA---CCATAAGGTGGATCGGTTAAAATCAT 11613
|||||| |||||||| || | || |||| ||||| || || || || || |||||
Sbjct 111 AATAACTGAATCCCACTTG---CAAGCTGTAGTGCCATATGGAGGGTCTGTCAATATCAT 55
Query 11614 ATCAATTGAACCGTCAGGAATACCTTTCATCACTTCTAGACAATCACCTTTCAT 11667
| || || ||||| || ||||||| |||| ||||||||||||||
Sbjct 54 AGAAACGCCTCCATCAGGGATTTCTTTCATTCGCTCTAAGCAATCACCTTTCAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432231505582946
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |