Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_021070.1
Length=33277
Score E
Sequences producing significant alignments: (Bits) Value
seq487720 136 8e-28
seq234277 114 3e-21
seq509832 105 1e-18
seq401989 96.9 7e-16
seq41159 91.5 3e-14
seq371279 84.2 5e-12
>seq487720
Length=1671
Score = 136 bits (150), Expect = 8e-28
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 33113 CCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCATCTTGA 33172
||| ||| ||||| | ||| ||||||||||| |||| ||||| | ||||||||||||
Sbjct 1115 CCTGTTTTAGCCCATAACTTTGTTGTGGTATTTTGTTGTCCAAAACGAGCTTCATCTTGT 1056
Query 33173 AACCAAACAAGCACTTCTTTTAAGTGGATATGCCCAGGGATCTTAAGGATCGTTTCTATT 33232
| ||| | | |||| | ||| |||||| |||||||||||||||||||||| ||||
Sbjct 1055 ATCCAGATATCGACTTTATCTAATGAGATATGACCAGGGATCTTAAGGATCGTTTTTATT 996
Query 33233 GGGAAtttttttAAAAGATTCTTGAGCTTTTTCTGATTGTTTTGG 33277
||||||||||||||| ||||||| ||| || ||||||||
Sbjct 995 TGGAATTTTTTTAAAATCTTCTTGAACTTCAAGGGACTGTTTTGG 951
>seq234277
Length=673
Score = 114 bits (126), Expect = 3e-21
Identities = 130/172 (76%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 33107 CGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCA 33166
|| |||||||| ||||||||| ||| |||||||| | ||||||||||||||||||
Sbjct 545 CGGGTTCCTTTCGTTGCCCAAATGCGGGTCGTGGTATTTTGCTGACCAAATCTAGCTTCA 486
Query 33167 TCTTGAAACCAAACAAGCACTTC-TTTTAAGTGGATATGCCCAGGGATCTTAAGGATCGT 33225
|||||||||||||| | || | | | ||| | ||| |||||| | |||||||||||
Sbjct 485 TCTTGAAACCAAAC-ATCAATGCGATCTAACGCCACATGACCAGGGGTGTTAAGGATCGT 427
Query 33226 TTCTATTGGGAAtttttttAAAAGATTCTTGAGCTTTTTCTGATTGTTTTGG 33277
| | |||| ||||||||||| || ||| | || |||||||||||
Sbjct 426 TGACAGCTGGAAGTTTTTTAAAAGCGTCCTGAATATCTTGAGATTGTTTTGG 375
>seq509832
Length=475
Score = 105 bits (116), Expect = 1e-18
Identities = 73/83 (88%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 33195 AGTGGATATGCCCAGGGATCTTAAGGATCGTTTCTATTGGGAAtttttttAAAAGATTCT 33254
|||| | |||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 1 AGTGAACATGCCCAGGGATCTTAAGGATCGTTTTTATTTGGAATTTTTTTAAAAGATACT 60
Query 33255 TGAGCTTTTTCTGATTGTTTTGG 33277
|| |||| ||||||| |||||
Sbjct 61 TGTGCTTGAACTGATTGCTTTGG 83
>seq401989
Length=654
Score = 96.9 bits (106), Expect = 7e-16
Identities = 126/172 (73%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 33107 CGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCA 33166
||| |||||||||| ||||||| ||||| || || |||| || || | ||||||
Sbjct 286 CGACTTCCTTTTTCGGCCCAAAGGCGTGTTGTCGTGTTTTGTTGTCCGAAGCGCGCTTCA 345
Query 33167 TCTTGAAACCAAACAAGCACTTCTTTTAAGT-GGATATGCCCAGGGATCTTAAGGATCGT 33225
||||||||||| || | || || || ||| | |||||| || || || | ||||||
Sbjct 346 TCTTGAAACCACAC-ATCAACGCTATTGAGTCTTACATGCCCTGGTATTTTGATGATCGT 404
Query 33226 TTCTATTGGGAAtttttttAAAAGATTCTTGAGCTTTTTCTGATTGTTTTGG 33277
|| |||| ||||||||| | ||| ||||||| ||| ||||| |||||
Sbjct 405 ATCGTACAGGAAATTTTTTAAAGGTTTCCTGAGCTTCTTCCGATTGATTTGG 456
>seq41159
Length=488
Score = 91.5 bits (100), Expect = 3e-14
Identities = 105/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 33107 CGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCA 33166
|| |||||||| | |||||||| |||||| ||||| | ||||||||||| ||||||
Sbjct 138 CGGGTTCCTTTCTTCGCCCAAATGCGGGTTGTCGTATTTTGCTGACCAAATCTTGCTTCA 79
Query 33167 TCTTGAAACCAAACAAGCACTTC-TTTTAAGTGGATATGCCCAGGGATCTTAAGGATCGT 33225
|||||||||||||| | || | | | ||| | ||| |||||| | |||||||||||
Sbjct 78 TCTTGAAACCAAAC-ATCAATGCGATCTAACGCCACATGACCAGGGGTGTTAAGGATCGT 20
Query 33226 TTCTATTGGGAAttttttt 33244
| | |||| ||||||
Sbjct 19 TGACAGCTGGAAGTTTTTT 1
>seq371279
Length=2577
Score = 84.2 bits (92), Expect = 5e-12
Identities = 100/132 (76%), Gaps = 3/132 (2%)
Strand=Plus/Plus
Query 33106 ACGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTC 33165
||| || ||||| | |||||||| ||| || ||||| ||||||||||||| |||||
Sbjct 2448 ACGTGTCCCTTTCTTGGCCCAAATACGGGTGGTAGTATTTTGTTGACCAAATCTGGCTTC 2507
Query 33166 ATCTTGAAACCAAACAAGCACTTCTTTTAAGTG-GATATGCCCAGGGATCTTAAGGATCG 33224
||||||||||||||| | || | | |||| | |||||| ||| | ||| ||||||
Sbjct 2508 ATCTTGAAACCAAAC-ATCAATGTGATCGAGTGCAACATGCCC-GGGGTGTTACGGATCG 2565
Query 33225 TTTCTATTGGGA 33236
|| | ||| |||
Sbjct 2566 TTGCCATTAGGA 2577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 105701047882836
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |