Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021070.1 Length=33277 Score E Sequences producing significant alignments: (Bits) Value seq487720 136 8e-28 seq234277 114 3e-21 seq509832 105 1e-18 seq401989 96.9 7e-16 seq41159 91.5 3e-14 seq371279 84.2 5e-12 >seq487720 Length=1671 Score = 136 bits (150), Expect = 8e-28 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 33113 CCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCATCTTGA 33172 ||| ||| ||||| | ||| ||||||||||| |||| ||||| | |||||||||||| Sbjct 1115 CCTGTTTTAGCCCATAACTTTGTTGTGGTATTTTGTTGTCCAAAACGAGCTTCATCTTGT 1056 Query 33173 AACCAAACAAGCACTTCTTTTAAGTGGATATGCCCAGGGATCTTAAGGATCGTTTCTATT 33232 | ||| | | |||| | ||| |||||| |||||||||||||||||||||| |||| Sbjct 1055 ATCCAGATATCGACTTTATCTAATGAGATATGACCAGGGATCTTAAGGATCGTTTTTATT 996 Query 33233 GGGAAtttttttAAAAGATTCTTGAGCTTTTTCTGATTGTTTTGG 33277 ||||||||||||||| ||||||| ||| || |||||||| Sbjct 995 TGGAATTTTTTTAAAATCTTCTTGAACTTCAAGGGACTGTTTTGG 951 >seq234277 Length=673 Score = 114 bits (126), Expect = 3e-21 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 33107 CGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCA 33166 || |||||||| ||||||||| ||| |||||||| | |||||||||||||||||| Sbjct 545 CGGGTTCCTTTCGTTGCCCAAATGCGGGTCGTGGTATTTTGCTGACCAAATCTAGCTTCA 486 Query 33167 TCTTGAAACCAAACAAGCACTTC-TTTTAAGTGGATATGCCCAGGGATCTTAAGGATCGT 33225 |||||||||||||| | || | | | ||| | ||| |||||| | ||||||||||| Sbjct 485 TCTTGAAACCAAAC-ATCAATGCGATCTAACGCCACATGACCAGGGGTGTTAAGGATCGT 427 Query 33226 TTCTATTGGGAAtttttttAAAAGATTCTTGAGCTTTTTCTGATTGTTTTGG 33277 | | |||| ||||||||||| || ||| | || ||||||||||| Sbjct 426 TGACAGCTGGAAGTTTTTTAAAAGCGTCCTGAATATCTTGAGATTGTTTTGG 375 >seq509832 Length=475 Score = 105 bits (116), Expect = 1e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 33195 AGTGGATATGCCCAGGGATCTTAAGGATCGTTTCTATTGGGAAtttttttAAAAGATTCT 33254 |||| | |||||||||||||||||||||||||| |||| |||||||||||||||||| || Sbjct 1 AGTGAACATGCCCAGGGATCTTAAGGATCGTTTTTATTTGGAATTTTTTTAAAAGATACT 60 Query 33255 TGAGCTTTTTCTGATTGTTTTGG 33277 || |||| ||||||| ||||| Sbjct 61 TGTGCTTGAACTGATTGCTTTGG 83 >seq401989 Length=654 Score = 96.9 bits (106), Expect = 7e-16 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 33107 CGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCA 33166 ||| |||||||||| ||||||| ||||| || || |||| || || | |||||| Sbjct 286 CGACTTCCTTTTTCGGCCCAAAGGCGTGTTGTCGTGTTTTGTTGTCCGAAGCGCGCTTCA 345 Query 33167 TCTTGAAACCAAACAAGCACTTCTTTTAAGT-GGATATGCCCAGGGATCTTAAGGATCGT 33225 ||||||||||| || | || || || ||| | |||||| || || || | |||||| Sbjct 346 TCTTGAAACCACAC-ATCAACGCTATTGAGTCTTACATGCCCTGGTATTTTGATGATCGT 404 Query 33226 TTCTATTGGGAAtttttttAAAAGATTCTTGAGCTTTTTCTGATTGTTTTGG 33277 || |||| ||||||||| | ||| ||||||| ||| ||||| ||||| Sbjct 405 ATCGTACAGGAAATTTTTTAAAGGTTTCCTGAGCTTCTTCCGATTGATTTGG 456 >seq41159 Length=488 Score = 91.5 bits (100), Expect = 3e-14 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 33107 CGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTCA 33166 || |||||||| | |||||||| |||||| ||||| | ||||||||||| |||||| Sbjct 138 CGGGTTCCTTTCTTCGCCCAAATGCGGGTTGTCGTATTTTGCTGACCAAATCTTGCTTCA 79 Query 33167 TCTTGAAACCAAACAAGCACTTC-TTTTAAGTGGATATGCCCAGGGATCTTAAGGATCGT 33225 |||||||||||||| | || | | | ||| | ||| |||||| | ||||||||||| Sbjct 78 TCTTGAAACCAAAC-ATCAATGCGATCTAACGCCACATGACCAGGGGTGTTAAGGATCGT 20 Query 33226 TTCTATTGGGAAttttttt 33244 | | |||| |||||| Sbjct 19 TGACAGCTGGAAGTTTTTT 1 >seq371279 Length=2577 Score = 84.2 bits (92), Expect = 5e-12 Identities = 100/132 (76%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 33106 ACGAGTTCCTTTTTCTGCCCAAATCTTGGTTGTGGTATTGCGTTGACCAAATCTAGCTTC 33165 ||| || ||||| | |||||||| ||| || ||||| ||||||||||||| ||||| Sbjct 2448 ACGTGTCCCTTTCTTGGCCCAAATACGGGTGGTAGTATTTTGTTGACCAAATCTGGCTTC 2507 Query 33166 ATCTTGAAACCAAACAAGCACTTCTTTTAAGTG-GATATGCCCAGGGATCTTAAGGATCG 33224 ||||||||||||||| | || | | |||| | |||||| ||| | ||| |||||| Sbjct 2508 ATCTTGAAACCAAAC-ATCAATGTGATCGAGTGCAACATGCCC-GGGGTGTTACGGATCG 2565 Query 33225 TTTCTATTGGGA 33236 || | ||| ||| Sbjct 2566 TTGCCATTAGGA 2577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105701047882836