Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq509954 134 2e-26 >seq509954 Length=433 Score = 134 bits (148), Expect = 2e-26 Identities = 242/351 (69%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 121771 CAGGAGCGTAGTCAAGGACACCTGCCATACCGAGAGCAGAAGCAACGTCTGCAGAGCAGA 121830 |||| ||| | ||||||| || || | | | |||||||| ||||| | || |||| Sbjct 348 CAGGTGCGAAATCAAGGATTCCAGCAGCAGCCAATGCAGAAGCTACGTCAGATGAACAGA 289 Query 121831 TCAAGATGTTGCCCTTCCCGCGACGAGTTTGCTGACCGATAGCGTTAGCATCTCTTTCGA 121890 | | | ||| || || || || | |||| | | |||| ||||||||| | ||| | Sbjct 288 TAATAAAGTTACCTTTACCACGTCTGGTTTCTTTAGCGATTTGGTTAGCATCACGTTCAA 229 Query 121891 TCTGGAAAAGAAGACCTTTGAACTTCTCAACAGACCAACGACCGTTAGAGTCAACGTCAA 121950 | ||||| | ||| |||||||| || || || ||||| ||||| || | || ||||| | Sbjct 228 TTTGGAACATAAGTCCTTTGAATTTTTCTACTGACCAGCGACCATTTGCATCTACGTCTA 169 Query 121951 GGTCGAAGATACCACC---TGCAGCAGTATTGTTCTGAGCACCTGCAACAGCGTTAGTGT 122007 |||||||||||| | ||| | | | ||| || ||||| | || | | | Sbjct 168 AATCGAAGATACCAGCGTTTGCTGAACCA--GTT-TGTGCACCAGGTTTTGCAGTTGCAT 112 Query 122008 AGATGGTACGAACAACTTCACGGTTGATCTCAGCAAGAATCTCAGTAGAGAGAATGTTGC 122067 | | |||||||| | |||||||| || || |||||||| ||||| || ||||| || Sbjct 111 ATACGGTACGAATTAGCTCACGGTTAATTTCTGCAAGAATTTCAGTTGAAAGAATATTTG 52 Query 122068 TAAGTTCTTGCTCGGCATCAAGACCGTGAATTGCTTTCAAGTCTTGAGCAA 122118 |||||||| || || || | || || | ||||||| || ||||||| Sbjct 51 CAAGTTCTTCTTCTGCGTCCAAGCCATGTACAGCTTTCATATCCTGAGCAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563223051406320