Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq496362 178 2e-39 >seq496362 Length=882 Score = 178 bits (196), Expect = 2e-39 Identities = 471/709 (66%), Gaps = 20/709 (3%) Strand=Plus/Minus Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAAT-CGCAATTCATACCTA 18038 ||| | |||||| | |||||| || | |||||| | ||| |||| |||| |||||||| | Sbjct 811 TAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCA-TTCATACCAA 753 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 || || | ||| || | || ||||||||||| | || || | | | || | | Sbjct 752 TTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAGGCGTCAATAA 693 Query 18099 TTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAAC 18158 | ||| || | | || |||||||| |||||| | | ||||| | | || | | Sbjct 692 TAATGGTTCTGATTCTGTCTTTTGGCACTTTATTTACCAAGTGATGTTGGTGCAA-ATGC 634 Query 18159 AC-GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || || |||||| ||| | |||||| || | || || |||||||| || || || Sbjct 633 ACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAAT 574 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||||| |||||| | ||| || || || ||| || || ||||| Sbjct 573 CCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAA 514 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || || || || || || || |||| || || ||| | | || || Sbjct 513 ATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAAAGAATCTGAAT----CA-- 460 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATA-CACGGTATACTCTCTATAGCATT 18396 ||||||| |||||| || ||| ||| || | | ||| |||| || || Sbjct 459 ATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACT-TCTAATGCGTT 401 Query 18397 AAACAAATCATCTTTTTCT--TTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || ||||| |||| ||| || | ||||||| |||||||||||||||||| |||||| Sbjct 400 GAATAAATCGGCTTTCTCTGCTTCG--TCTTTTACATAAGTGTCGATTAACAAGGAATAC 343 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATA-AAACGATCTAGCCTCGGG 18513 |||| || || ||||||| || || |||| ||| ||| || | || || | Sbjct 342 GTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTTCGCTTCAGC 283 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 |||||| | || | ||| |||| | | ||| ||||| || || ||||| | || Sbjct 282 ATATTGCACTTCATTTACAAAGTTTTCAGCAAGATTTTCATTTACAATTCCGTCTGAAGC 223 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG---TT 18630 ||||||||||| |||| | ||| || || | || ||| | | || | ||| || Sbjct 222 GGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTCAACTTGTTATT 163 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAA 18679 ||| || | || ||||| ||| | ||||| |||||| | ||||| ||| Sbjct 162 CCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAAA 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 727064497503200