Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq498792 127 7e-25 seq471061 111 5e-20 seq479375 98.7 3e-16 >seq498792 Length=554 Score = 127 bits (140), Expect = 7e-25 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40522 GCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGT 40581 |||| || || || || ||||| ||||| |||||||| | || ||| ||||| |||| Sbjct 1 GCATCGATACCCGTTCCGGGTTAAGGAATCGCTCGAACAGCAGGTCGTATTCCAGAGGGT 60 Query 40582 CGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAG 40641 | ||||| || ||| | || ||||| |||||||| ||||| | || || || |||| Sbjct 61 CAAGGTCAGTAATCTTTTGCACATAGGCCACCAGCGACCCGGCACCCGAACCACGGCCAG 120 Query 40642 GGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGT 40701 | || || |||||||| ||| ||||| |||| |||||| |||| ||||||| Sbjct 121 GACCTACTGGTACGCCGTTACTCTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGT 180 Query 40702 ACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 | |||||| ||||||||||| || || || | |||| Sbjct 181 AACCCGGGAACCCCATCTGGATAATGATATCCAGCTCG 218 >seq471061 Length=546 Score = 111 bits (122), Expect = 5e-20 Identities = 156/217 (72%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 40503 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAG--A 40560 ||||| || |||| ||||||||||||||| ||||| ||||| | || |||| || | Sbjct 60 AAGTCAATATCGAAATCGGGCATGGACACACGCTCAGGGTTTAAAAAGCGCTACAAATAA 119 Query 40561 TGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAAC 40620 | |||| || | | |||||||||||||| || ||| || || || || || | Sbjct 120 TAAGTC-GTAATGAATAGGGTCGAGGTCGGTAATATTGAGCGAATAAGCAACGAGTGAGC 178 Query 40621 CGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGA 40680 | || |||| || || ||||| ||||| ||||| || | || ||||| ||||| | Sbjct 179 CTGCACCAGAACCACGACCAGGACCGACTGGTACGCCATTGGCTTTTGCCCAACGGATAA 238 Query 40681 AGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT 40717 ||||| ||||| ||||||||| || |||||||| Sbjct 239 AGTCCATGACGATGAGGAAGTAACCAGGAAAGCCCAT 275 >seq479375 Length=664 Score = 98.7 bits (108), Expect = 3e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 40503 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40562 ||||||| ||||| |||||||||||| || || || ||||||| ||| || ||||| | Sbjct 94 AAGTCGACGTCGAAATCGGGCATGGATACACGTTCAGGGTTCAAGAAACGTTCGAACAGT 153 Query 40563 AGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40622 | ||| || || || || | |||||| || || |||| ||||| | ||| || Sbjct 154 AAATCGTATTCTAGTGGATCTAAGTCGGTAATTTTAAGCGCGTATGCGACTAACGATCCC 213 Query 40623 GCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAG 40682 || |||| || || || || || || | |||||| || || |||| | || || Sbjct 214 GCACCAGAACCACGGCCGGGACCAACTGGAATGCCGTTGTCTTTGCCCCACTGAATAAAC 273 Query 40683 TCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGG 40721 ||| |||| |||||||| ||||| ||||||||| Sbjct 274 TCCATCACGATAAGGAAGTAACCGGGGAAACCCATCTGG 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162862103741736