Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_021300.1
Length=43882
Score E
Sequences producing significant alignments: (Bits) Value
seq272438 98.7 3e-16
>seq272438
Length=1266
Score = 98.7 bits (108), Expect = 3e-16
Identities = 209/306 (68%), Gaps = 11/306 (4%)
Strand=Plus/Plus
Query 1210 CAACGTGATAACCTACAAGAGCTGGTACAAATGGCTATGACTCACGCCCAAGAGAACCAA 1269
|||||||||||||| ||||| |||| | ||| | ||| ||| |||| |||
Sbjct 662 CAACGTGATAACCTGCAAGAATTGGTTATCTTTGCTTTAGGTCATGCCAAAGACAACGCT 721
Query 1270 GACGAGTTCACACAGCTGTCTCAAGTCATGGCTACTACGGTAGAGATTAAATCATTCCGT 1329
|| || || || | | | | ||||| |||| || || || || ||| ||||
Sbjct 722 GATGAATTTACTTTGTTAACAAACATCATGCAGGCTACCGTTGAAATAAAGTCAATCCGC 781
Query 1330 ACTGCTACGCTT--AAGGACTACATCAAGGCGCATGTGTCTAACGT--TACTTACACTAA 1385
|||| | | || || |||| ||| |||| ||||| ||||| | || || | |||
Sbjct 782 ACTG--AAGTTTTAAAAGACTTCATAAAGGAACATGTATCTAATATGGTATTTGC--TAA 837
Query 1386 GAACAAAGCTGGTGATTTCATGTTCAAGAAAGAGGTGAAAGGTACGCCATGTGAGTACAA 1445
|||||||||||||| | |||||| || ||||| || ||||| || ||||||||||||
Sbjct 838 AAACAAAGCTGGTGAATACATGTTTAAAAAAGATGTTAAAGGCACTGCATGTGAGTACAG 897
Query 1446 GACACTTGAGTCTAAGTGGTACGACTTCGACAGTAAAGG--CCAAGCGT-CTGCTGATAT 1502
| || | |||| ||||| || || ||| ||||| ||| | | ||| ||| ||
Sbjct 898 TGTAATTAATACTAACTGGTATGATTTTAACAAGAAAGGTAACAATCCTGCTGTTGAAAT 957
Query 1503 TGACGT 1508
||| ||
Sbjct 958 TGATGT 963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139425275831856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |