Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq449735 197 2e-45 seq508109 113 5e-20 seq128994 111 2e-19 >seq449735 Length=3187 Score = 197 bits (218), Expect = 2e-45 Identities = 322/463 (70%), Gaps = 3/463 (1%) Strand=Plus/Plus Query 41652 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAG 41711 |||||||||| |||||||| ||||| ||||| || || || |||||| | || ||| Sbjct 35 TACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCTCGTGTGTAT 94 Query 41712 TGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGT 41771 | || || | || || || | ||| | || || | ||||| || || || | Sbjct 95 TAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCAATTGTTAAAT 154 Query 41772 ATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGCGCGATGGGTTCTA 41831 | | || |||||||| || || || | ||||| || | ||||| || ||||| Sbjct 155 ACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCACTGGGTAGCC 214 Query 41832 AAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGGAAACATATTCAGA 41891 | || || ||| ||||| ||||| || || || || | || || |||| | Sbjct 215 ACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAGCACTTTCAAA 274 Query 41892 CAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCAACGTTGTATTATC 41951 ||||||||||| |||||| ||||| ||||| ||||| || || ||||| |||| || | Sbjct 275 CAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACCTTGTTCTACC 334 Query 41952 CGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGAAA 42011 || | |||||||| ||||| ||||||||| | || || ||||| ||| || ||||| Sbjct 335 CGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGCGGGGTTGATG 394 Query 42012 ACAACCGTATCCGTCACCTGGATTATGGCGTACAGCTTAACGATTTGATGTATAAACGTT 42071 ||||||| | ||||| | ||||| ||||||||| |||| | | ||||| |||| Sbjct 395 ACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATGTACTCGCGTT 454 Query 42072 TGATGAATAACGATTACATCACTCTGTTCAGCC---CTGATGT 42111 | || || |||| ||||| || |||| |||| ||||||| Sbjct 455 TAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGT 497 >seq508109 Length=334 Score = 113 bits (124), Expect = 5e-20 Identities = 210/306 (69%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 89645 CCACGTCCCTTTTGTTTCAGACCCAGGAACACGATCGCGTTGACTTGTTTCAGGCGCGGA 89704 || || |||||||| |||| | |||||| || || || || | | || || Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246 Query 89705 TCATTACGCACAGCATCAACAACGGTAAACGCATCATCA-TAGGTCTTTGAGCTAACCAT 89763 ||| | || ||| ||| || ||| ||||||| ||| ||| | | || | ||| Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCA-CTGATCAT 187 Query 89764 GAAATGTAGGTTGATTTGCTGTTGTCCTGCTTCTGCCAGGTTTGCGACGGAATCGAAAGC 89823 || |||||||||||||||| ||| || || | | | || || || || || Sbjct 186 AAAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGC 127 Query 89824 AACATCGAAGCCAGCATGTTTATAAACCGATACTGCAACAGCCCCAGCAACCGCCGCTAA 89883 ||||| || ||||| ||||||||||| ||||| |||| ||| |||||||| | ||||| Sbjct 126 TACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAA 67 Query 89884 ACGCGCTGCAACGTCTTTTGATACATCAGCAATGGTAAGGTTCGGTACAATGCCTTTAGA 89943 || ||||| |||| ||| ||||||||||| || || || || | ||| |||| || Sbjct 66 TTTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGA 7 Query 89944 ACGCGC 89949 ||| || Sbjct 6 ACGAGC 1 >seq128994 Length=861 Score = 111 bits (122), Expect = 2e-19 Identities = 204/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 43937 TATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACC 43996 ||| |||| ||| | ||||| || | ||||||||||| ||||||||| ||| || Sbjct 472 TATTTGTGCATGATGTCAGTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCC 413 Query 43997 TTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTG 44056 | | |||| |||||| |||| | ||||||||||| || || || || || | Sbjct 412 TGTTCGTTTGCCTTTGCTGAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTA 353 Query 44057 ATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GC 44114 ||||||||||||||||| | || | || |||| ||| || | ||||| || Sbjct 352 ATTGCCCGTGATGAAGCCTTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGC 295 Query 44115 AGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAAGCAA 44174 || |||||||| ||||||||||||| |||||| || | ||| | ||||||| Sbjct 294 AGGGTGGTAAAGACGACCCAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGT 235 Query 44175 CACAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTATTCA 44231 | | ||| || ||| || || |||||||||||||| | ||||||||| Sbjct 234 ATGACTTATTCGTCAAAGCGGCGGAACAAGAAAAAGAATGGGCCAAGTACTTATTCA 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560094935165040