Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq449735 158 2e-33 seq509673 120 5e-22 seq516580 114 2e-20 seq250551 105 1e-17 seq496347 93.3 7e-14 seq511105 86.0 1e-11 >seq449735 Length=3187 Score = 158 bits (174), Expect = 2e-33 Identities = 591/917 (64%), Gaps = 51/917 (6%) Strand=Plus/Plus Query 63672 AAACTTTCTTTACCAACCCCGATCATGGCAGGTGTTCGTACGCCAACTCGACAATTTAGC 63731 ||| |||| |||| || || || ||||||||||||||||||||||| || || |||||| Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84 Query 63732 TCATGTGTTAAAATCGAATCTGGCGACTCTCTGCATTCAGTCAACA--AAGTAGCCGAAG 63789 || ||||| ||| || | ||||||| || ||||| | ||| | | | | | Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCT--G 142 Query 63790 CAATCATCAACTA--TATCAGTAAACGTGCTGGTATCGGTGTTAATGGCGGTGCTATTCG 63847 |||| | || || |||| ||||||| || || || |||| | ||| ||||| Sbjct 143 CAATTGTTAAATACGTATCGC--AACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCG 200 Query 63848 TGCTGAAGGCTCGGTTG-----TTCGAGCAGGTGAAATTCGACACACTGGTGTAATCCCA 63902 ||| || ||| | |||| || ||| || || ||| || || Sbjct 201 TGCA-----CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCT 255 Query 63903 TTCTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCACAAGGTGGTGTTCGTGGTGGT 63962 || | || |||||||| || || || || ||||| ||||| ||||| ||||| || Sbjct 256 TTTTATAAGCACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGC 315 Query 63963 GCTGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTTGAAAAACTTTTGGTGCTGAAG 64022 || ||||| | |||||| |||||||||||||||| ||||| || || || || || Sbjct 316 GCAGCAACCTTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAA 375 Query 64023 AACAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTTGACTACAGTGT---GTCTATC 64079 || ||| || ||||| || ||||| | |||||| | || ||| | || || || Sbjct 376 AATAACCGCGGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAAT 435 Query 64080 AGTCGCTTGATGATGCAACGTCTAGCAACAAATGATTACATCACGTTGTTTAGCCCAGAT 64139 | | | ||| ||| || | | | || ||||| || ||||||||||| | Sbjct 436 AAAC---TAATGTACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCT 492 Query 64140 GAACGTAATGGCGCACTTTATGGTGAATATCACACGAACCCTGAGAAGTTCGAAGAGCTT 64199 || ||| ||||| | || || | ||| || |||| || | |||| Sbjct 493 GATGTGCCAGGC---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTT 549 Query 64200 TATCTAGAACTCGAAGCTGACCCGACAGTTCGTAAGAAGCGTATCAAAGCTACTGAGTTA 64259 ||| || || |||| ||| || ||||||| || || || ||||||| ||| | Sbjct 550 TATGTAAAATACGAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTG 609 Query 64260 TTCAGCATGTTTTGTCAAGAGCGTACAAGTACAGGTCGAATCTAC---CCGATCTTTGTT 64316 ||| |||||| ||||| ||| ||||||| ||||| || ||| | | | ||| Sbjct 610 TTCTCAATGTTTGCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAAC---GTT 666 Query 64317 GACAACTTGAACTCTCAATCGCCATACATCG---AAG------CTATCAAGCAATCGAAC 64367 ||| ||| || | || || | ||| | ||| |||| ||||| || Sbjct 667 GACCACTGTAATACGCACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAAT 726 Query 64368 TTGTGTATGGAAATCGCGTTACCGACGTACCCACTTGGTA--GT----GCTGATGAA--- 64418 || ||| | ||||| || ||||| || | || | | || || | || ||| Sbjct 727 TTATGTTTAGAAATTGCATTACCAACTAAGCCGTTGGATAACGTAAACGACGAAGAAGGC 786 Query 64419 GAGATCGCACTTTGTACACTTGCTGCTTACAACTTAGGCGCAATGGAATCTGCAAGTGAA 64478 || || || || |||||||| |||| | |||||||| || || || || | |||| Sbjct 787 GAAATTGCGCTATGTACACTCTCTGCATTTAACTTAGGGGCTATTGAGTCACTAGATGAA 846 Query 64479 TTTGCACATCTAGCACCGATTGTTATGCGTGCGTTAGATAACTTGCTTGATTATCAAGAT 64538 ||| | | | || | ||| | | || || ||||||||||| ||||||| |||||| Sbjct 847 CTTGAAGAATTGGCTGAGCTTGCTGTACGCGCTTTAGATAACTTACTTGATTTTCAAGAC 906 Query 64539 TATCCTGTTGCTGCTGC 64555 || || || | ||||| Sbjct 907 TACCCAGTACCGGCTGC 923 >seq509673 Length=441 Score = 120 bits (132), Expect = 5e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 63897 ATCCCATTCTGGAAACACTTTCAGACTGCTGTGAAGTCATGTTCACAAGGTGGTGTTCGT 63956 |||||||||| |||| || || |||||||| || | || |||||||| || || ||| Sbjct 406 ATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAAGGCGGCGTCCGT 347 Query 63957 GGTGGTGCTGCAACGCTAACTTACCCGATTTGGCATTTAGAAGTTGAAAAACTTTTGGTG 64016 || ||||| || ||| | |||||| | ||||||||||||||||| | | ||||| Sbjct 346 GGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAGTCATTATTGGTA 287 Query 64017 CTGAAGAACAACAAAGGCGTTGAAGAAAACCGTATTCGTCATCTTGACTAC 64067 ||||| || ||| ||||| ||||| |||||| | |||||| | || ||| Sbjct 286 CTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGATTAC 236 >seq516580 Length=413 Score = 114 bits (126), Expect = 2e-20 Identities = 142/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 172663 TACGGCATTAAGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTG 172722 |||| ||| || || | ||| ||||||| || | ||||| |||||||||||||| ||| Sbjct 301 TACGACATCAAACAGTTAGCAGTTGAATGTGCTACCAAGCGTATGTATCCAGATATTTTG 242 Query 172723 AGCTATGAAAAGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCGTTCA 172782 | ||| || ||| |||| ||||| ||||| ||||| |||| || ||||| ||||||||| Sbjct 241 AACTACGACAAGTTAGTTGAAACTACTGGTGGGTTCAAGTACCCAATGGGCTGTCGTTCA 182 Query 172783 TTCTTAGGCGACTGGAAAAAC---GAAGATGGTGAAACTGTATTCGACGGTCGAAACAAT 172839 ||| || ||| ||| | || | | |||||| | |||| || || || || || Sbjct 181 TTCCTACACGAATGGTCAGACCCAGTAACAGGTGAACCAGTATATGATGGACGTAATAAC 122 Query 172840 CTAGGCGTTGTCTC 172853 | || ||||| || Sbjct 121 TTGGGTGTTGTATC 108 >seq250551 Length=853 Score = 105 bits (116), Expect = 1e-17 Identities = 234/351 (67%), Gaps = 0/351 (0%) Strand=Plus/Plus Query 173212 ACTGACGCATGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAA 173271 ||||| | |||||| || || ||||| || |||||| | ||||| || ||||| ||| Sbjct 272 ACTGAGTCTTGGAAACAAGAAACAGGTTATGGCTTTAGTTTATACAGTACCCCAAGTGAA 331 Query 173272 TCGCTATGTGATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATC 173331 |||| ||||| || | || ||| ||| || | | | ||| | Sbjct 332 AACTTATGCAGCCGTTTTTGCCAGCTAGATACCACCCAGTTTGGCGTTGTGGCAGGTGTG 391 Query 173332 AATGACAAAGACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCG 173391 | ||||||| ||| || || || ||||||||||| || |||||||| ||||| Sbjct 392 ACCGACAAAGGCTATTACACCAATAGCTTCCACTTAGATGTTGAAAAGAAAGTAAATCCT 451 Query 173392 TTCGAGAAGATTGACTTTGAAGCATCGTACCCAGCATATGCAAACGGCGGTTTCATTTGC 173451 || || |||||||| |||||| | | || ||||| || || ||||| || ||||| Sbjct 452 TTTGATAAGATTGATTTTGAACAACCTTATCCAGCCATCGCCAATGGCGGGTTTATTTGT 511 Query 173452 TATGCAGAGTTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTAT 173511 || | || | || ||||||| ||||||| ||| || ||| || |||||||| Sbjct 512 TACGGCGAATATCCCAACATGCAGCACAATATTGAAGCGCTCGAAAACGTTTGGGATTAC 571 Query 173512 GCTCATAGCAAAGTTGCTTACTTCGGTACAAACACACCGATTGATCAATGT 173562 | ||||| ||| | || | ||| || || || || |||||| | ||| Sbjct 572 AGTTATAGCCGAGTGCCATATTACGGCACCAATACTCCCATTGATGAGTGT 622 >seq496347 Length=416 Score = 93.3 bits (102), Expect = 7e-14 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 65884 AAGCACTTTACTTGTGTATGCACGCAGTAAACGCGCTTGAAGCAATTCGTTTCTATGTTT 65943 |||| || ||||||||||||||||| || ||||| | ||||||||||| ||||| |||| Sbjct 270 AAGCCCTATACTTGTGTATGCACGCTGTTAACGCTTTAGAAGCAATTCGATTCTACGTTT 329 Query 65944 CATTTGCATGTACTTTCAACTTTGCTGAA--CAAGGCATCATGGAAGGCAACGCGAAAGT 66001 | ||||| ||||||| |||| ||| |||| || ||||||||| || || Sbjct 330 CCTTTGCTATTACTTTCTCTTTTGGGGAACGCAAG--ATTATGGAAGGCGTAGCCAAGAC 387 Query 66002 AATGAAACTGATTGCACGTGATGA 66025 ||| ||| |||||||| || || Sbjct 388 AATCGCACTAATTGCACGCGACGA 411 >seq511105 Length=248 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/201 (71%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 65907 GCAGTAAACGCGCTTGAAGCAATTCGTTTCTATGTTTCATTTGCATGTACTTTCAACTTT 65966 ||||| |||| | ||||| ||||| || |||| |||||||| || | || || Sbjct 212 GCAGTCAACGTCTTAGAAGCGATTCGCTTTTATGCCTCATTTGCCTGCTCGTTTGCGTTC 153 Query 65967 GCTGAACAAGGCATCATGGAAGGCAACGCGAAAGTAATGAAACTGATTGCACGTGATGAG 66026 ||||| | | | |||||||| ||||| ||| | || || || ||||| ||||||||| Sbjct 152 GCTGAGCGTAAC-TGATGGAAGGTAACGCCAAAATTATCAAGCTCATTGCGCGTGATGAG 94 Query 66027 CAGCTTCACTTGAAAGGCACACAAGCGT-TAATCAATATCTGGCACTCTGGTAAAGATGA 66085 ||| || || | ||||| || || | | ||||| | || ||||| || || Sbjct 93 GCGCTACATTTAACCGGCACGCA-GCATATGCTCAATCTTATGCGTAACGGTAAGGACGA 35 Query 66086 TCCAGAAATGGTAGAAATTGC 66106 |||||| |||||||||||||| Sbjct 34 TCCAGAGATGGTAGAAATTGC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786705339782320