Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq509954 178 1e-39 seq489705 89.7 6e-13 >seq509954 Length=433 Score = 178 bits (196), Expect = 1e-39 Identities = 232/320 (73%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 102564 TTGCTCAAGACCTGAAGGCGATTCATGGTTTGGATGCTGAGCAAGAGCTCGCAAACATCC 102623 ||||||| || |||| || | ||||| ||||| || || |||| || ||||| || | Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 102624 TCAGCACTGAAATCCTTGCTGAAATCAACCGTGAAGTTGTTCGTACCATCTACGTAAACG 102683 | |||||||| ||||| ||||| |||||||| | |||||||| | || | || | Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 102684 CTGTTGCTGGTGCTCAGAACAACACTGCTAACGCTGGTATCTTCGACCTCGACGTTGACT 102743 | ||||||| || | | || ||||||||||||||||| | ||||| || Sbjct 121 CAAAACCTGGTGCACAAACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGATG 180 Query 102744 CCAACGGTCGCTGGTCTGTTGAGAAGTTCAAGGGTCTGCTGTTCCAAATCGAGCGCGATG 102803 | || ||||||||||| || || || ||||| || || |||||||||| || || |||| Sbjct 181 CAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGATG 240 Query 102804 CAAACGCAATCGGTCAGCAAACTCGTCGTGGCAAGGGTAACATCCTGATCTGCTCCGCTG 102863 | ||| ||||| | | |||| | ||||| || |||||| | | ||||| || ||| Sbjct 241 CTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCTG 300 Query 102864 ACGTTGCTTCTGCACTTGGC 102883 |||| ||||||||| ||||| Sbjct 301 ACGTAGCTTCTGCA-TTGGC 319 >seq489705 Length=338 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/78 (87%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 148128 TTACGGGGTGTAGCTTAGCTTGGTAGAGCGCCC-GCTTTGGGAGCGGGAGGTCGCAGGTT 148186 |||||||||||||| ||||| ||| | ||| | |||||||||| || |||||||||||| Sbjct 218 TTACGGGGTGTAGCGTAGCTCGGTT-ATCGCGCTGCTTTGGGAGGGGAAGGTCGCAGGTT 160 Query 148187 CAAATCCTGCCACCCCGA 148204 | |||||||||||||||| Sbjct 159 CGAATCCTGCCACCCCGA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546012054119440