Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021561.1 Length=37324 Score E Sequences producing significant alignments: (Bits) Value seq491877 206 6e-49 seq517215 168 2e-37 seq520781 136 9e-28 >seq491877 Length=500 Score = 206 bits (228), Expect = 6e-49 Identities = 349/502 (70%), Gaps = 5/502 (1%) Strand=Plus/Plus Query 31966 TCACGCGCTGCGATTGGCCTGAACTCTGAGCTAATCGAAGGTGACTTGAAGCTACGCTCG 32025 || |||| ||| ||||| | || || || | | || |||||||| ||||| || Sbjct 1 TCGCGCGGTGCAATTGGTTTAAATTCAGAAATGGTTGAGGGTGACTTAAAGCTTAAGTCT 60 Query 32026 TTCTACAAAGTGGGCGGCTCTATCGCTGACCGTGATGTGAATTCAACGGCTACCGTTGCA 32085 || |||||| | ||||||||||| || ||| |||| || ||| || | ||| || Sbjct 61 TTTTACAAACTTGGCGGCTCTATTGCGTCACGTAATGTTAACTCAGTTGCAGCAGTTACA 120 Query 32086 GGTATTAAGATTGCAGCGGATGAAATGGTATCAGTGAAAGTGCCTTGGAAATACGGCCCA 32145 || || || | ||| || ||| || || || || ||||||||||||||| Sbjct 121 GGCTCAAAAATCGGTATGGACGAGCAGGTGTCTGTTAAGTCACCGTGGAAATACGGCCCA 180 Query 32146 TACGAAACCACAGAAGAAGCGTTTAAGCGTCGCGCACGTTCGCCTGAGGAATTCTCTGAA 32205 |||||||| || |||||||| ||||||||||||| | |||| || || || Sbjct 181 TACGAAACAACTGAAGAAGCATTTAAGCGTCGCGGCAAAACTCCTGCTGAGTTTTCAATG 240 Query 32206 ATCATCGGTCAAGACATGGCAGACGCTACAATGTCAGGTTGGATTGGTTACGCATTGAAT 32265 | ||||||||||| |||| || || | |||||| ||| ||||||| | | Sbjct 241 TTAATCGGTCAAGATATGGGTGATGCCGTTCTTGATGGTTGGGTTGATTACGCACTAGCT 300 Query 32266 GCACTACAAGGCGCAATCGGCTCTAACGCCGGCATGAACGTATCTGGCGAGCTTGCAACT 32325 ||| |||| || | ||| | ||| | | ||||| ||| | ||||| || ||||| Sbjct 301 GCATTACAGGGTTCTATCAAAACAAACTCTGACATGATTGTAACAGGCGACCTAGCAACA 360 Query 32326 GAAGGTAAGAAAGTTCTTACCAAAGGTTTGCGCACAATGGGCGACAAAGCATCATCTA-- 32383 |||||||| || ||||| |||||||| || ||||| || |||||||| || | | Sbjct 361 GAAGGTAAAAAGGTTCTAACCAAAGGCTTACGCACTAT-GGCGACAA--GTTCGGCCAAG 417 Query 32384 TCGCAATCTGGGTGATGGATTCAACGTCTTACTTTGACATCGTTGACGAGGCGATTGACA 32443 | || |||||||| ||||| || | || ||||| |||||||||||| | || || | Sbjct 418 TTGCTATCTGGGTTATGGACTCTGCTTCATACTTCGACATCGTTGACCAAGCTATCAGCG 477 Query 32444 ACAAGCTTTATGAAGAAGCTGG 32465 | ||| |||||||||||||||| Sbjct 478 AAAAGATTTATGAAGAAGCTGG 499 >seq517215 Length=535 Score = 168 bits (186), Expect = 2e-37 Identities = 188/250 (75%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 35998 TTTTTCTCCATATCCACTCATGCTTAAATTGCTTTATATTGCTGCTAACCAGCACACTAG 36057 |||||| | ||| ||| || ||||| ||| ||||| | || ||||| ||| Sbjct 61 TTTTTCCCAATA-CCAGCAATATTTAAACATCTTCATATTTGAACCAATAAGCACTGTAG 119 Query 36058 TGAACGGCTGTGAGGCTGTCATAACTATCGCGCAATTAGGCTTAATAATGCGCTTCAACT 36117 |||| ||||| || ||||||||||| |||| ||||||||| ||||| || || |||| Sbjct 120 TGAAAGGCTGACTAGCAGTCATAACTATAGCGCCATTAGGCTTTATAATTCGTTTTAACT 179 Query 36118 GCTCCCACATTGGTTCCAATGGGATAATAGAGTCCCACTTGCATGCTGTAGTTCCATATG 36177 | |||||||| ||||| | || |||| || ||||||||||| ||||| || ||||| | Sbjct 180 GTTCCCACATCGGTTCAAGAGGAATAACTGAATCCCACTTGCACGCTGTTGTGCCATAAG 239 Query 36178 GCGGATCAGTCAAAATCATATCCACACTACCGCTTTCAATTTCTTTCATTCGCTCTAGGC 36237 ||||||||||||| |||||||| || |||| | || |||||||| ||||| |||| Sbjct 240 GCGGATCAGTCAATATCATATCAACCGAACCGTCTGGGATCTCTTTCATACGCTCAAGGC 299 Query 36238 AGTCGCCCTG 36247 | || || || Sbjct 300 AATCTCCGTG 309 >seq520781 Length=281 Score = 136 bits (150), Expect = 9e-28 Identities = 149/197 (76%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 36057 GTGAACGGCTGTGAGGCTGTCATAACTATCGCGCAATTAGGCTTAATAATGCGCTTCAAC 36116 || || ||||| || ||||||||||| || || | |||||| ||||| || |||||||| Sbjct 194 GTAAAAGGCTGCGAAGCTGTCATAACAATAGCACCATTAGGTTTAATGATACGCTTCAAT 135 Query 36117 TGCTCCCACATTGGTTCCAATGGGATAATAGAGTCCCACTTGCATGCTGTAGTTCCATAT 36176 || ||||||||| || || |||| || ||||||||||| |||||||| |||||| Sbjct 134 TGGTCCCACATTAAATCTAAATCAATAACTGAATCCCACTTGCAAGCTGTAGTGCCATAT 75 Query 36177 GGCGGATCAGTCAAAATCATATCCACACTACCGCTTTCA---ATTTCTTTCATTCGCTCT 36233 || || || ||||| |||||| || || | ||| |||||||||||||||||| Sbjct 74 GGAGGGTCTGTCAATATCATAGAAAC---GCCTCCATCAGGGATTTCTTTCATTCGCTCT 18 Query 36234 AGGCAGTCGCCCTGCAT 36250 | ||| || || | ||| Sbjct 17 AAGCAATCACCTTTCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118570633032264