Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_021857.1
Length=41475
Score E
Sequences producing significant alignments: (Bits) Value
seq315065 273 6e-69
seq512503 147 6e-31
seq501738 116 1e-21
seq497879 86.0 2e-12
seq508319 84.2 6e-12
>seq315065
Length=1253
Score = 273 bits (302), Expect = 6e-69
Identities = 663/987 (67%), Gaps = 34/987 (3%)
Strand=Plus/Minus
Query 39275 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 39334
|||| |||||| | || | ||||||||| || || |||||||| ||||||||||||
Sbjct 1154 GGCACCCATTCCGTTTTTAAACTCCTGAAAAATCGCTCCATTGGCGCATTATCCCAGCAG 1095
Query 39335 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTG 39394
|| || || || ||||| || ||| | || | || |||||||| || | || |||
Sbjct 1094 TTACCTCGGCGACTCATGCTTTGTGTAATTTTATAGCGCCACAAACGTTGGC-GGTACTT 1036
Query 39395 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACG 39454
| ||||||||||| || || || || ||| ||||||| || | ||| | || |
Sbjct 1035 CAAACTCGTATAATGGCTACCTTGGTCTGAGTGAAACATCAATCCACTTGGCCTGCCTCT 976
Query 39455 GGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACAT 39514
| |||| | |||| || |||||||| | || | | | || ||||| ||||||||
Sbjct 975 GCTTTCATAAGCCAACTCAAGCGCTTTTAGCGTTAAGTTAGTATCTGGCGACAACGACAT 916
Query 39515 GGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 39574
||||| || || ||| | || || | || | ||| || || | || ||||||||
Sbjct 915 TGCCCAACCAACGACTTTGCGCGCAAATAAATCAATAACGACCGCTAAATAAGCCCAGCG 856
Query 39575 CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGC 39634
||||| ||||| ||||| |||||||||||||||||||| ||| || || || |
Sbjct 855 ATTACCTGTCCAAATATACGTCACATCACCGCACCACACAGTATTCGGTTCAACAACATC 796
Query 39635 GAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCG 39694
|||||||| || || | || ||||| ||| ||| |||| ||||||||||||||| |
Sbjct 795 AAACTGCCTATCTAGCAAATTTGGGATTTCAAAATGCTCATTACCACCACGTTTATATTG 736
Query 39695 GTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCA 39754
|| || || ||||| | || || | ||| ||| | | ||| | |
Sbjct 735 ATGTTGTGGTACTTGGCAGCTCTCTAGTTTTAGTTTAACCATCAGCTTAGCGGCACGATA 676
Query 39755 GCGTCCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGA 39814
|| | | | | | | ||||| |||| || || ||| || || || ||
Sbjct 675 ACGGCTTAATTCAAAATCGTTATTTGTTGCTATTGCTGCTATTGTTCGCGCCCCTGCTGA 616
Query 39815 ACCGTGGCTGATGCCATGTA--GCTCAAGTACCTGA-CTGCGTAA---TAC-AGCCCGTC 39867
||| ||| || ||||| ||| | || | | || | ||| ||| || |
Sbjct 615 ACCACCGCTCATCGTATGTATTGCTTTA--ACTTCAGCTTC-TAACCTTACTTGCTCAGG 559
Query 39868 TGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGA 39927
|| || | | | | || | || | ||| ||||| |||||||| ||||| || ||
Sbjct 558 TGTCGGC-GTTGTATC----CCGTATAGCCAATATCTATAGCTGCTACGATGCACATTGA 504
Query 39928 ACACATGGCAGAGTGTGAC-CATAGGATAATGCGCTC--TGAGT----TTCCCGATTATC 39980
| || || || ||| || |||||| || ||| ||| | ||| |||||| |
Sbjct 503 ATACGCTACACAG-CAGACTAATTGGATAACGCTCTCGTTGATTTAACTTCTCGATTAAC 445
Query 39981 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 40040
||||| ||||||||||||| ||||||||||| |||||||||||||||||||| || || |
Sbjct 444 GAGAATTGTTCAGGGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTAATATATCCTTTT 385
Query 40041 CCATTTCAATGCGTTGTA---GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGG 40097
| | |||||||||||||| |||||| | || |||||||||||||||||||| || |
Sbjct 384 CTAATTCAATGCGTTGTATTTGCTTTT---TAAGTTCACGGATTTCAATTTGTTCGGGCG 328
Query 40098 TAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATC 40157
| || || || || ||||| | || | ||| || | | ||| | |||||
Sbjct 327 TCATTGGTGAAGCAGCTGGTGACTGACCATTACGTTCTTGTTTTAATTGAGTAACCCACT 268
Query 40158 TTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTC- 40216
| | | || || ||||| |||| |||||||| || ||| | |||||| |
Sbjct 267 TACTTACGGTTGATTTACCAACCCCCATCGCTTTGGCTGCTTCTTC--TTGTGTATAGCC 210
Query 40217 -TGGTCAACAACCAGTTGAGCGGATTC 40242
|||||||| || || ||||| | |||
Sbjct 209 TTGGTCAACTACAAGCTGAGCTGTTTC 183
>seq512503
Length=416
Score = 147 bits (162), Expect = 6e-31
Identities = 227/321 (71%), Gaps = 5/321 (2%)
Strand=Plus/Minus
Query 39964 TGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTT 40023
|||||||| | |||| |||| |||||||||||||||||||||| || || ||||||||
Sbjct 369 TGAGTTTCTCAATTAATAAGAATTGTTCAGGGAGTCTGACATCAACAGAGCAGTAGCCTT 310
Query 40024 TTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTC 40083
|||||| || || || || | |||||| |||| || |||| | || | || |||||
Sbjct 309 TTTTAAAATATCCTTTTCTAATTCAATACGTTCTATTGTTTTTTTAAGTGCTCGTATTTC 250
Query 40084 AATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAG 40143
|||||| || | ||| || || | ||||| ||| | || | ||| || || ||
Sbjct 249 AATTTGCTCAGCGGTCATCGGTGCTGCTTTGGGTTTGACCCCTTTACGTTCTTCTTTGAG 190
Query 40144 TTGTTTGACCCATCTTG-TCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTG 40202
||||| ||||| |||| | || || ||| ||||| |||| ||||| || ||||||
Sbjct 189 CTGTTTTACCCA-CTTGCTAATGGTTGAATAACCAACTCCCATTGCTTTAGCTGCATCTT 131
Query 40203 CCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAA 40262
| ||||| | |||||||| | ||||||| ||| | || || || |||
Sbjct 130 CGTGGGTGTAACCATTATCAACAACTAACTGAGCGGTTTCTAATCGGAATTCAGCACTAT 71
Query 40263 AATTT---CtttttttCATTG 40280
||||| | ||||||| |||
Sbjct 70 AATTTGGACGTTTTTTCTTTG 50
>seq501738
Length=316
Score = 116 bits (128), Expect = 1e-21
Identities = 194/278 (70%), Gaps = 2/278 (1%)
Strand=Plus/Plus
Query 39463 ATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCCCAGC 39522
||||||||| || ||||| ||| ||| || || || || || |||| ||||| |
Sbjct 12 ATGCCATTTTCAAAGCTTTACAGGTCAGCTCACTATCTGGTGATAATGACAAAGCCCATC 71
Query 39523 CCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACCCG 39582
| || ||||| | | || | ||| | ||||||||| || || |||||||| ||||| |
Sbjct 72 CAACAGGTTTGCGGGAAAATAAGTCTAAAACAACGGCTAGATAGGCCCAGCGATTACC-G 130
Query 39583 TCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCC 39642
||| | ||| ||||| || || |||||||| |||| ||| | || || || ||||| |
Sbjct 131 ACCAAACATACGTCACGTCGCCACACCACACTTGATCTGGTTGAGTTACTGCAAACTGTC 190
Query 39643 TTTCAAG-GTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTGAGTC 39701
| ||| ||| | ||||| || ||||| || || || | |||| || |
Sbjct 191 GATTAAGCGTATTCGGGGATCGCTACATGCTCTTGTGCAGCTTTCCTATAAGAATGCTTA 250
Query 39702 GGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAG 39739
|||||||||||||| | | ||| |||| | |||| ||
Sbjct 251 GGCTGCTGACAGCTTAATAACCCAAGCTTTCTCATTAG 288
>seq497879
Length=315
Score = 86.0 bits (94), Expect = 2e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 39274 CGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCA 39333
||||||||| ||| |||| | ||| || || || ||||||||||| || ||||| ||
Sbjct 145 CGGCATCCACTCGGTCTTGAAACTTCTAAAAAATCGTTCCATTGGCGCATTGTCCCAACA 86
Query 39334 GTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAA 39378
|||||||| ||||||||||| || | || |||||| ||||||
Sbjct 85 ATTTCCGCGTCGGCTCATACTTTGCGTTATTTGGTATTTCCACAA 41
>seq508319
Length=243
Score = 84.2 bits (92), Expect = 6e-12
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 39510 GACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCC 39569
||||| ||||| |||||| |||| || || | ||| | ||||| || ||||| |||
Sbjct 174 GACATTGCCCAACCCACTAACTTTCGAGCAAATAAGTCCATCACAACAGCCAGGTAAGCC 115
Query 39570 CAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTC 39629
|| || | || ||||| ||| | || | |||||||||||| || |||| ||||
Sbjct 114 CAACGAGTCCCTGTCCAAATAAACGTTATATCACCGCACCAAACTTGATCCGGCTGACAT 55
Query 39630 ACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATG 39670
|| || ||||| | |||||| ||| || || || |||||
Sbjct 54 ACTGCAAACTGGCGTTCAAGTGTGTTCGGTATTGCTACATG 14
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 131770941397788
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |