Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq315065 273 6e-69 seq512503 147 6e-31 seq501738 116 1e-21 seq497879 86.0 2e-12 seq508319 84.2 6e-12 >seq315065 Length=1253 Score = 273 bits (302), Expect = 6e-69 Identities = 663/987 (67%), Gaps = 34/987 (3%) Strand=Plus/Minus Query 39275 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 39334 |||| |||||| | || | ||||||||| || || |||||||| |||||||||||| Sbjct 1154 GGCACCCATTCCGTTTTTAAACTCCTGAAAAATCGCTCCATTGGCGCATTATCCCAGCAG 1095 Query 39335 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCCGGAACTG 39394 || || || || ||||| || ||| | || | || |||||||| || | || ||| Sbjct 1094 TTACCTCGGCGACTCATGCTTTGTGTAATTTTATAGCGCCACAAACGTTGGC-GGTACTT 1036 Query 39395 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCCGGGCTTACCACG 39454 | ||||||||||| || || || || ||| ||||||| || | ||| | || | Sbjct 1035 CAAACTCGTATAATGGCTACCTTGGTCTGAGTGAAACATCAATCCACTTGGCCTGCCTCT 976 Query 39455 GGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACAT 39514 | |||| | |||| || |||||||| | || | | | || ||||| |||||||| Sbjct 975 GCTTTCATAAGCCAACTCAAGCGCTTTTAGCGTTAAGTTAGTATCTGGCGACAACGACAT 916 Query 39515 GGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 39574 ||||| || || ||| | || || | || | ||| || || | || |||||||| Sbjct 915 TGCCCAACCAACGACTTTGCGCGCAAATAAATCAATAACGACCGCTAAATAAGCCCAGCG 856 Query 39575 CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGC 39634 ||||| ||||| ||||| |||||||||||||||||||| ||| || || || | Sbjct 855 ATTACCTGTCCAAATATACGTCACATCACCGCACCACACAGTATTCGGTTCAACAACATC 796 Query 39635 GAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCG 39694 |||||||| || || | || ||||| ||| ||| |||| ||||||||||||||| | Sbjct 795 AAACTGCCTATCTAGCAAATTTGGGATTTCAAAATGCTCATTACCACCACGTTTATATTG 736 Query 39695 GTGAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCA 39754 || || || ||||| | || || | ||| ||| | | ||| | | Sbjct 735 ATGTTGTGGTACTTGGCAGCTCTCTAGTTTTAGTTTAACCATCAGCTTAGCGGCACGATA 676 Query 39755 GCGTCCCATCTGGTAGCCTCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGA 39814 || | | | | | | ||||| |||| || || ||| || || || || Sbjct 675 ACGGCTTAATTCAAAATCGTTATTTGTTGCTATTGCTGCTATTGTTCGCGCCCCTGCTGA 616 Query 39815 ACCGTGGCTGATGCCATGTA--GCTCAAGTACCTGA-CTGCGTAA---TAC-AGCCCGTC 39867 ||| ||| || ||||| ||| | || | | || | ||| ||| || | Sbjct 615 ACCACCGCTCATCGTATGTATTGCTTTA--ACTTCAGCTTC-TAACCTTACTTGCTCAGG 559 Query 39868 TGCCGTCTGGTTTTTCAGGACGGTTTTTCCAGTATCTGTAGCTGCTGCGATGAACCCCGA 39927 || || | | | | || | || | ||| ||||| |||||||| ||||| || || Sbjct 558 TGTCGGC-GTTGTATC----CCGTATAGCCAATATCTATAGCTGCTACGATGCACATTGA 504 Query 39928 ACACATGGCAGAGTGTGAC-CATAGGATAATGCGCTC--TGAGT----TTCCCGATTATC 39980 | || || || ||| || |||||| || ||| ||| | ||| |||||| | Sbjct 503 ATACGCTACACAG-CAGACTAATTGGATAACGCTCTCGTTGATTTAACTTCTCGATTAAC 445 Query 39981 GAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCT 40040 ||||| ||||||||||||| ||||||||||| |||||||||||||||||||| || || | Sbjct 444 GAGAATTGTTCAGGGAGTCGGACATCAAGAGAGCGGTAGCCTTTTTTAATATATCCTTTT 385 Query 40041 CCATTTCAATGCGTTGTA---GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGG 40097 | | |||||||||||||| |||||| | || |||||||||||||||||||| || | Sbjct 384 CTAATTCAATGCGTTGTATTTGCTTTT---TAAGTTCACGGATTTCAATTTGTTCGGGCG 328 Query 40098 TAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATC 40157 | || || || || ||||| | || | ||| || | | ||| | ||||| Sbjct 327 TCATTGGTGAAGCAGCTGGTGACTGACCATTACGTTCTTGTTTTAATTGAGTAACCCACT 268 Query 40158 TTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTC- 40216 | | | || || ||||| |||| |||||||| || ||| | |||||| | Sbjct 267 TACTTACGGTTGATTTACCAACCCCCATCGCTTTGGCTGCTTCTTC--TTGTGTATAGCC 210 Query 40217 -TGGTCAACAACCAGTTGAGCGGATTC 40242 |||||||| || || ||||| | ||| Sbjct 209 TTGGTCAACTACAAGCTGAGCTGTTTC 183 >seq512503 Length=416 Score = 147 bits (162), Expect = 6e-31 Identities = 227/321 (71%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 39964 TGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGCCTT 40023 |||||||| | |||| |||| |||||||||||||||||||||| || || |||||||| Sbjct 369 TGAGTTTCTCAATTAATAAGAATTGTTCAGGGAGTCTGACATCAACAGAGCAGTAGCCTT 310 Query 40024 TTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGATTTC 40083 |||||| || || || || | |||||| |||| || |||| | || | || ||||| Sbjct 309 TTTTAAAATATCCTTTTCTAATTCAATACGTTCTATTGTTTTTTTAAGTGCTCGTATTTC 250 Query 40084 AATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTGTTTTGCCCTGACGCTCATCACGCAG 40143 |||||| || | ||| || || | ||||| ||| | || | ||| || || || Sbjct 249 AATTTGCTCAGCGGTCATCGGTGCTGCTTTGGGTTTGACCCCTTTACGTTCTTCTTTGAG 190 Query 40144 TTGTTTGACCCATCTTG-TCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCATCTG 40202 ||||| ||||| |||| | || || ||| ||||| |||| ||||| || |||||| Sbjct 189 CTGTTTTACCCA-CTTGCTAATGGTTGAATAACCAACTCCCATTGCTTTAGCTGCATCTT 131 Query 40203 CCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAA 40262 | ||||| | |||||||| | ||||||| ||| | || || || ||| Sbjct 130 CGTGGGTGTAACCATTATCAACAACTAACTGAGCGGTTTCTAATCGGAATTCAGCACTAT 71 Query 40263 AATTT---CtttttttCATTG 40280 ||||| | ||||||| ||| Sbjct 70 AATTTGGACGTTTTTTCTTTG 50 >seq501738 Length=316 Score = 116 bits (128), Expect = 1e-21 Identities = 194/278 (70%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 39463 ATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACATGGCCCAGC 39522 ||||||||| || ||||| ||| ||| || || || || || |||| ||||| | Sbjct 12 ATGCCATTTTCAAAGCTTTACAGGTCAGCTCACTATCTGGTGATAATGACAAAGCCCATC 71 Query 39523 CCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCGCTTACCCG 39582 | || ||||| | | || | ||| | ||||||||| || || |||||||| ||||| | Sbjct 72 CAACAGGTTTGCGGGAAAATAAGTCTAAAACAACGGCTAGATAGGCCCAGCGATTACC-G 130 Query 39583 TCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGCGAACTGCC 39642 ||| | ||| ||||| || || |||||||| |||| ||| | || || || ||||| | Sbjct 131 ACCAAACATACGTCACGTCGCCACACCACACTTGATCTGGTTGAGTTACTGCAAACTGTC 190 Query 39643 TTTCAAG-GTAGTTAGGGATAGCAACATGTTCATGACCACCACGTTTATACCGGTGAGTC 39701 | ||| ||| | ||||| || ||||| || || || | |||| || | Sbjct 191 GATTAAGCGTATTCGGGGATCGCTACATGCTCTTGTGCAGCTTTCCTATAAGAATGCTTA 250 Query 39702 GGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAG 39739 |||||||||||||| | | ||| |||| | |||| || Sbjct 251 GGCTGCTGACAGCTTAATAACCCAAGCTTTCTCATTAG 288 >seq497879 Length=315 Score = 86.0 bits (94), Expect = 2e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 39274 CGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCA 39333 ||||||||| ||| |||| | ||| || || || ||||||||||| || ||||| || Sbjct 145 CGGCATCCACTCGGTCTTGAAACTTCTAAAAAATCGTTCCATTGGCGCATTGTCCCAACA 86 Query 39334 GTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAA 39378 |||||||| ||||||||||| || | || |||||| |||||| Sbjct 85 ATTTCCGCGTCGGCTCATACTTTGCGTTATTTGGTATTTCCACAA 41 >seq508319 Length=243 Score = 84.2 bits (92), Expect = 6e-12 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39510 GACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCC 39569 ||||| ||||| |||||| |||| || || | ||| | ||||| || ||||| ||| Sbjct 174 GACATTGCCCAACCCACTAACTTTCGAGCAAATAAGTCCATCACAACAGCCAGGTAAGCC 115 Query 39570 CAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTC 39629 || || | || ||||| ||| | || | |||||||||||| || |||| |||| Sbjct 114 CAACGAGTCCCTGTCCAAATAAACGTTATATCACCGCACCAAACTTGATCCGGCTGACAT 55 Query 39630 ACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAACATG 39670 || || ||||| | |||||| ||| || || || ||||| Sbjct 54 ACTGCAAACTGGCGTTCAAGTGTGTTCGGTATTGCTACATG 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131770941397788