Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq44246 165 1e-34 seq75492 140 4e-27 seq70662 140 4e-27 seq443314 116 4e-20 seq70661 107 2e-17 seq86481 102 1e-15 seq6431 98.7 1e-14 seq103378 86.0 8e-11 >seq44246 Length=4029 Score = 165 bits (182), Expect = 1e-34 Identities = 205/281 (73%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||| ||||| || |||| ||| |||| | |||||||| || || ||||| Sbjct 717 GCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTT 658 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| | |||||||||||| || | |||| |||| || || | | |||| | Sbjct 657 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCAC 598 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| || || ||||||||||||||||| || ||||| || ||||||||||||||||| Sbjct 597 ACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCC 538 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| |||| |||||||| | || ||||| ||| || || | || Sbjct 537 CTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGT 478 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342 || ||||||||||||||||| | || ||||||| ||| Sbjct 477 TCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACT 437 Score = 113 bits (124), Expect = 5e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 1627296 CCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGCC 1627355 |||||| || | | || ||||| ||||| ||| ||| ||||||| | || || || Sbjct 1802 CCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCC 1743 Query 1627356 CGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGCC 1627415 || || || ||||| |||||||||||| ||||| | ||||| | |||| ||||||| Sbjct 1742 TGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCC 1683 Query 1627416 CAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGCC 1627475 ||||||||| | || | |||||||||||| | |||| || || ||| | || ||| Sbjct 1682 CAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCC 1623 Query 1627476 GTGCT 1627480 ||||| Sbjct 1622 GTGCT 1618 >seq75492 Length=1479 Score = 140 bits (154), Expect = 4e-27 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | || ||| |||||||||||||| || || | | ||| ||| Sbjct 929 GCCAGCTCCCCGGGCAGCAGCATGCGGACGGCGGTCTGGATATCCCGGGAGGTGATGGTG 988 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | | ||||| |||| ||||| ||| |||||| | ||||||| |||| ||||| Sbjct 989 GAGTGATTGTTGTAGTGAGCCAGGCGGGAGGCCTCTCCGGCGATGCGCTCGAAGATGTCC 1048 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 | || || |||||||||||| ||| | |||| |||||||| ||||||||||||| Sbjct 1049 ATCACGAAGGAGTTCATGACCTCCATGGCCTTGAAGGAGATGCTGGTGTCGGGGTGCACC 1108 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 1109 TGCTTCAGCACCTTGTA 1125 >seq70662 Length=316 Score = 140 bits (154), Expect = 4e-27 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||||| ||||||||||| ||||| | | | ||| ||| Sbjct 296 GCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGAATCTCCCTGGAGGTGATGGTG 237 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| |||||||| |||||| | ||||||| |||| |||||| Sbjct 236 GAGCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCACCGGCGATGCGCTCGAAGATGTCG 177 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 | || || |||||||||| ||| | |||| |||||| || ||||||||| ||| Sbjct 176 CTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCAGTGTCGGGGTGGACC 117 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 116 TGCTTCAGCACCTTGTA 100 >seq443314 Length=301 Score = 116 bits (128), Expect = 4e-20 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| Sbjct 299 GATGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAA 240 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||| | || || |||||||||| ||| | |||| ||||||||| |||||| Sbjct 239 GATGTCGCTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGG 180 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| ||||||||||| Sbjct 179 GTGCACCTGCTTCAGCACCTTGTA 156 >seq70661 Length=246 Score = 107 bits (118), Expect = 2e-17 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| |||| |||||||| |||||| | ||||||| |||| Sbjct 243 GATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCACCGGCGATGCGCTCGAA 184 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||| | || || |||||||||| ||| | |||| |||||| || |||||| Sbjct 183 GATGTCGCTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCAGTGTCGGG 124 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 ||| |||||||| ||||||||||| Sbjct 123 GTGGACCTGCTTCAGCACCTTGTA 100 >seq86481 Length=4042 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| ||||||||||| |||| ||||| || ||| | ||||| Sbjct 811 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 752 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 751 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 701 >seq6431 Length=248 Score = 98.7 bits (108), Expect = 1e-14 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460 ||| ||| ||||||||| | || |||||||| |||||| | ||||||| |||| Sbjct 245 GATGGTGGAGCGCTTGTTGTAATGAGCCAGACGAGAGGCCTCACCGGCGATGCGCTCGAA 186 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||| | || || |||||||||| ||| | ||| |||||| || |||||| Sbjct 185 GATGTCGCTCACGAAGGAGTTCATGATGCCCATGGCTTTGGAGGAGATCCCAGTGTCGGG 126 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 ||| |||||||| ||||||||||| Sbjct 125 GTGGACCTGCTTCAGCACCTTGTA 102 >seq103378 Length=1867 Score = 86.0 bits (94), Expect = 8e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| |||||||| ||| || | | || ||||| |||||||||||| | || Sbjct 1776 ACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTC 1717 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| || || || |||| | | ||| | Sbjct 1716 CCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATG 1657 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 1656 ATGGCGTACCACAGCTG 1640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6064014044954134