Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 165 1e-34
seq75492 140 4e-27
seq70662 140 4e-27
seq443314 116 4e-20
seq70661 107 2e-17
seq86481 102 1e-15
seq6431 98.7 1e-14
seq103378 86.0 8e-11
>seq44246
Length=4029
Score = 165 bits (182), Expect = 1e-34
Identities = 205/281 (73%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121
|| ||||||||| ||||| || |||| ||| |||| | |||||||| || || |||||
Sbjct 717 GCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTT 658
Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181
||| | |||||||||||| || | |||| |||| || || | | |||| |
Sbjct 657 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCAC 598
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
||||| || || ||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 597 ACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGCC 538
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301
|||||| |||| |||||||| | || ||||| ||| || || | ||
Sbjct 537 CTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGGT 478
Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342
|| ||||||||||||||||| | || ||||||| |||
Sbjct 477 TCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACT 437
Score = 113 bits (124), Expect = 5e-19
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 1627296 CCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGCC 1627355
|||||| || | | || ||||| ||||| ||| ||| ||||||| | || || ||
Sbjct 1802 CCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCC 1743
Query 1627356 CGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGCC 1627415
|| || || ||||| |||||||||||| ||||| | ||||| | |||| |||||||
Sbjct 1742 TGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCC 1683
Query 1627416 CAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGCC 1627475
||||||||| | || | |||||||||||| | |||| || || ||| | || |||
Sbjct 1682 CAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCC 1623
Query 1627476 GTGCT 1627480
|||||
Sbjct 1622 GTGCT 1618
>seq75492
Length=1479
Score = 140 bits (154), Expect = 4e-27
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
||||| || ||| ||| | || ||| |||||||||||||| || || | | ||| |||
Sbjct 929 GCCAGCTCCCCGGGCAGCAGCATGCGGACGGCGGTCTGGATATCCCGGGAGGTGATGGTG 988
Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467
| | ||||| |||| ||||| ||| |||||| | ||||||| |||| |||||
Sbjct 989 GAGTGATTGTTGTAGTGAGCCAGGCGGGAGGCCTCTCCGGCGATGCGCTCGAAGATGTCC 1048
Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527
| || || |||||||||||| ||| | |||| |||||||| |||||||||||||
Sbjct 1049 ATCACGAAGGAGTTCATGACCTCCATGGCCTTGAAGGAGATGCTGGTGTCGGGGTGCACC 1108
Query 1254528 TGCTTGAGCACCTTGTA 1254544
||||| |||||||||||
Sbjct 1109 TGCTTCAGCACCTTGTA 1125
>seq70662
Length=316
Score = 140 bits (154), Expect = 4e-27
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
||||| || ||| ||| | |||||| ||||||||||| ||||| | | | ||| |||
Sbjct 296 GCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGAATCTCCCTGGAGGTGATGGTG 237
Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467
||||||||| |||| |||||||| |||||| | ||||||| |||| ||||||
Sbjct 236 GAGCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCACCGGCGATGCGCTCGAAGATGTCG 177
Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527
| || || |||||||||| ||| | |||| |||||| || ||||||||| |||
Sbjct 176 CTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCAGTGTCGGGGTGGACC 117
Query 1254528 TGCTTGAGCACCTTGTA 1254544
||||| |||||||||||
Sbjct 116 TGCTTCAGCACCTTGTA 100
>seq443314
Length=301
Score = 116 bits (128), Expect = 4e-20
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460
||| ||| ||||||||| |||| ||||| ||| |||||| | ||||||| ||||
Sbjct 299 GATGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCCCCGGCGATGCGCTCGAA 240
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520
|||||| | || || |||||||||| ||| | |||| ||||||||| ||||||
Sbjct 239 GATGTCGCTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGG 180
Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544
|||||||||||| |||||||||||
Sbjct 179 GTGCACCTGCTTCAGCACCTTGTA 156
>seq70661
Length=246
Score = 107 bits (118), Expect = 2e-17
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460
||| ||| ||||||||| |||| |||||||| |||||| | ||||||| ||||
Sbjct 243 GATGGTGGAGCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCACCGGCGATGCGCTCGAA 184
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520
|||||| | || || |||||||||| ||| | |||| |||||| || ||||||
Sbjct 183 GATGTCGCTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCAGTGTCGGG 124
Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544
||| |||||||| |||||||||||
Sbjct 123 GTGGACCTGCTTCAGCACCTTGTA 100
>seq86481
Length=4042
Score = 102 bits (112), Expect = 1e-15
Identities = 89/111 (80%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||||||||| ||||||||||| |||| ||||| || ||| | |||||
Sbjct 811 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 752
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160
|||| ||||||||| || ||||| ||||||| |||||| |||||||
Sbjct 751 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 701
>seq6431
Length=248
Score = 98.7 bits (108), Expect = 1e-14
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 1254401 GATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGAT 1254460
||| ||| ||||||||| | || |||||||| |||||| | ||||||| ||||
Sbjct 245 GATGGTGGAGCGCTTGTTGTAATGAGCCAGACGAGAGGCCTCACCGGCGATGCGCTCGAA 186
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520
|||||| | || || |||||||||| ||| | ||| |||||| || ||||||
Sbjct 185 GATGTCGCTCACGAAGGAGTTCATGATGCCCATGGCTTTGGAGGAGATCCCAGTGTCGGG 126
Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544
||| |||||||| |||||||||||
Sbjct 125 GTGGACCTGCTTCAGCACCTTGTA 102
>seq103378
Length=1867
Score = 86.0 bits (94), Expect = 8e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
|| ||||| |||||||| ||| || | | || ||||| |||||||||||| | ||
Sbjct 1776 ACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTGCTCTTC 1717
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
|||| ||||||||||| ||||||||| |||| || || || |||| | | ||| |
Sbjct 1716 CCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTTTCAGTCTGTGACTCGATG 1657
Query 1628287 ATGGCCGACCAGATCTG 1628303
||||| |||| | |||
Sbjct 1656 ATGGCGTACCACAGCTG 1640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6064014044954134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |