Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq44246 172 5e-38 seq152719 150 2e-31 seq59939 96.9 3e-15 seq152718 87.8 2e-12 seq6427 86.0 6e-12 >seq44246 Length=4029 Score = 172 bits (190), Expect = 5e-38 Identities = 976/1544 (63%), Gaps = 42/1544 (3%) Strand=Plus/Minus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| ||| | || ||| || || || | || || || || Sbjct 1785 TCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGG 1726 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | | ||| | || |||||||| ||||| ||||| || |||| Sbjct 1725 TGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 1666 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCG 138656 || || ||||| |||| || || |||| | ||||| |||| || Sbjct 1665 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG---CTTGGCGATCT 1609 Query 138657 T-TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| ||| | ||||||||||| ||| | || | || | |||||| ||||||| Sbjct 1608 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACT 1549 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCG 138775 | | || ||| || |||| |||| |||||| ||||| || | ||| | Sbjct 1548 GGAGGATGCCCTTGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCAGCTCGGCGG 1490 Query 138776 CCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 ||| ||| ||| ||||| || || | ||||| || || || ||||| || | Sbjct 1489 CCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCA 1430 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 ||| ||||||||| ||| || | || || | || |||| ||||||||||| | Sbjct 1429 GCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGC 1370 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---A 138952 | || ||||| | |||| || | |||||| || ||| | |||| ||| | Sbjct 1369 CCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGAC---TGATCGGCCTCGGGCA 1313 Query 138953 TAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTAT 139012 || || |||| | || ||||| ||||| | || ||||| ||| || ||| | Sbjct 1312 CCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAG 1253 Query 139013 GCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 || | | | || || | || ||| ||| | ||||| ||| ||| Sbjct 1252 ACTCCAGTTTCTTGAAGTCAAAAGT----CCG--CTCGGGGGTGACGT--ACA----TGT 1205 Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132 ||| | || ||||| | || ||||| || || || ||| | |||||| || | Sbjct 1204 TGAGAGCGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGA 1145 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 |||| | || | || || |||||||| || || | || || || ||||| || | || Sbjct 1144 TTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGT 1085 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252 | || || |||||||| ||||| ||||| ||||| | ||| || | ||| || ||| Sbjct 1084 TGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGG 1025 Query 139253 ATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTT 139312 | ||| | | ||| | | |||| | | | || ||||| || | Sbjct 1024 CGTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGG 965 Query 139313 CGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369 |||||| | || || || | | || | | |||| || || | | || | | Sbjct 964 TGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGGCTCTCGCTGG 908 Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429 ||||||| || ||||| | ||| || || | | |||||||||| || || |||| Sbjct 907 GACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCC 848 Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGT 139489 |||| || | | | ||| | || ||| || ||| ||| |||| |||| | Sbjct 847 ACAAGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTTCTTCTTCAGCT 788 Query 139490 TAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TT 139546 ||||| || || |||||| |||||| || ||||| || ||||| | ||||| | Sbjct 787 CCAGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTC 728 Query 139547 TCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCT 139606 | ||||| || || ||||| | ||| | | || ||| | || | || ||| || Sbjct 727 GCTTGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGA 668 Query 139607 CCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCAT 139666 |||| ||| | | | |||||||||| |||| || | | ||||| | || Sbjct 667 CCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATG-CAG 609 Query 139667 GT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGT 139724 | || | |||||||| || | | ||||| || | | || | || | | || Sbjct 608 CTGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACT-GCTTCAGCGT 550 Query 139725 CTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTG 139784 ||||| || || ||||||||||||| ||| |||| ||| ||||| || || || Sbjct 549 GTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTG 490 Query 139785 CGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGA 139844 || | || || || || || || || || ||||| |||||| | | ||| Sbjct 489 AGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGA 430 Query 139845 CATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGAC 139904 | || | ||| || ||||||||| | |||||| | |||||| ||||| || || Sbjct 429 GAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGATTCCGACCGACAC 370 Query 139905 TCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--A 139962 | ||| ||||| || || ||| || ||||| ||| | ||| || ||| || | Sbjct 369 CCTCATGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGA 310 Query 139963 CCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || ||| || |||||| |||| ||| | | ||| |||||| Sbjct 309 TCG--CTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 268 >seq152719 Length=2073 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| ||||| || || || || ||| ||| Sbjct 727 GATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACCCAG 668 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | |||||| |||||||| || || || || || ||||| ||||| Sbjct 667 CGACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCA 608 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | ||||||||||||||| Sbjct 607 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGATTATAA 548 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || ||||| || | || | ||| |||| ||| | ||||| Sbjct 547 CATCCAGAAAGAATCCACCATCCATCTTGTGCTGCGCTTGAGAGGAGG 500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| | || || || || || ||| ||| | Sbjct 270 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGTCCATCACTCTGGAGGTTGAACCCAGC 211 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || || || || ||||| ||||| Sbjct 210 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAG 151 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || | ||||||||||||| || |||||||| || Sbjct 150 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGA 116 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || ||||||||| | || || || || || || ||||| || || | || ||| ||| | Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || ||||| || ||||| || || Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 379 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || | | ||||||||||| || |||||||| || Sbjct 378 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGA 344 >seq59939 Length=800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 165 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGCCTAGT 106 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 105 GACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 46 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || | ||||||||||||| || |||||||| ||| Sbjct 45 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGAT 10 >seq152718 Length=3078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || || || || ||| ||| | Sbjct 2373 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTGGAGGTTGAACCCAGC 2314 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||| || || || ||||| || ||| | || || Sbjct 2313 GACACCATTGAGAATGTCAAAGTTAAGATTCAGGATAAGGAAGGCATCCCTTCTGAACAG 2254 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 | | ||||||||||||| || |||||||| ||| Sbjct 2253 TACAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGAT 2218 >seq6427 Length=3314 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || || || || || || || || || || ||| |||||| | |||| || || Sbjct 3313 CTCACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAG 3254 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||| ||||| ||||| || || || ||||| || | ||||||||||||| Sbjct 3253 GCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGC 3194 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || |||||||| ||| | | | | || || || ||||| || ||||| || || || Sbjct 3193 AAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 3134 Query 24905 CA-CTTG 24910 || |||| Sbjct 3133 CATCTTG 3127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446942323892560