Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023005.1 Length=41386 Score E Sequences producing significant alignments: (Bits) Value seq512931 601 9e-168 seq500082 230 6e-56 seq521066 199 1e-46 seq518992 154 4e-33 seq501937 109 1e-19 >seq512931 Length=538 Score = 601 bits (666), Expect = 9e-168 Identities = 456/538 (85%), Gaps = 0/538 (0%) Strand=Plus/Plus Query 39183 CCTGCCCGACCGGACCACTCACCATCCGTGAAGTCCGTGGGCGTGACCGGGGGCATGACT 39242 ||||| || || |||||| || || |||||||||||||| || || || || |||||| Sbjct 1 CCTGCTCGTCCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACT 60 Query 39243 GGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTTCCCGGTAACTCTGGCACA 39302 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 61 GGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACA 120 Query 39303 CAGTCCGCTCGGGATCACCTTGGCGAGCTGGTGAAGGAGTTCGATGCGATCCTGAAGCCT 39362 |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 121 CAGTCCGCAAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCT 180 Query 39363 GACGGCACGATCATCTATCTGGGCACACCACAGACCGAAATGACCCTTTACCGGGAACTT 39422 ||||| ||||||||||| |||| || |||||||||||||||||||| ||| |||||||| Sbjct 181 GACGGTACGATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTT 240 Query 39423 GAGGACCGTGGCTACACGACGACCATCTGGCCTGCCCGGTATCCGCGTGACGTGGCCGAT 39482 |||||||| |||||| ||||||| ||||||||||| || || || || || ||||| || Sbjct 241 GAGGACCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGAC 300 Query 39483 ATGGAGACGTATTGGCACGCTAAGGGCGCACGGAGTCGCCTTGACCCTACGATGCTCAAA 39542 | ||| | || |||||||| |||||| || || || |||| ||| |||||||| Sbjct 301 CTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAG 360 Query 39543 GAGCTTGAGGCTGACCCGTCCCTCTTCTGGAAGCCTACAGACCCTATTCGCTTCGATGAT 39602 ||||| || | ||| | || |||||||||||||||||||||||||| ||||||||| Sbjct 361 GAGCTGGAAGACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGAT 420 Query 39603 GAGGACTTGCGGGAACGTGAGCTGTCCTATGGTAAGGGCGGCTTTGCTCTACAGTTCATG 39662 || ||| |||| || || || || || ||||| ||||| ||||| ||||||||||||||| Sbjct 421 GAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATG 480 Query 39663 CTTAACCCGAACCTTAGCGACATCGAGAAGTACCCTCTCAAGCTGCGGGATTGGATCG 39720 || |||||||||||||||||||||||||||||||| | |||||||| |||||||||| Sbjct 481 CTCAACCCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538 >seq500082 Length=313 Score = 230 bits (254), Expect = 6e-56 Identities = 242/314 (77%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 5938 AAGATGGCATCAAGTGGCTGATGATCCACGGTGCCAATACCGCTGGCGTAGATAAGGTTC 5997 ||||||| || | ||||| ||||| ||||| ||||| || ||||| || |||||||| | Sbjct 311 AAGATGGTATTCAATGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTCC 252 Query 5998 CTTTCGATGAACGGCAACAATGGGTTCGAGACAA--CACAGACTGCATCCTCCGTTGCGC 6055 |||||||| |||| | ||||||||||| ||||| | |||| |||||||| ||||| Sbjct 251 CTTTCGATCAACGCAAGCAATGGGTTCGTGACAATGAATCGACT--ATCCTCCGATGCGC 194 Query 6056 TGAAGACCCACTTCAGAACACAGAATGGATGTCAATGGATTCTCCCTTTTGCTTCCTTGC 6115 ||||||||| || |||| || |||||| ||||| || ||||| || ||| | || Sbjct 193 TGAAGACCCGCTCACTCACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGC 134 Query 6116 CTTCTGTTTTGAGTGGGCTGGAGTC-TGCGCGAATGGTGAGAAACACGTATCAGCCCTGC 6174 ||||| || |||||||| || ||| | |||| |||| | |||| ||| || || | Sbjct 133 GTTCTGCTTCGAGTGGGCCGGTGTCGTTCGCG-ATGGAGCTGCACACCGATCCGCTCTAC 75 Query 6175 CTATCGCTTTTGACGGAAGTTGCTCGGGAATTCAGCACTTTTCTGCGATGCTTCGAGATG 6234 | ||||||||||||||||| || ||||| || ||||| |||||||| ||||| || || | Sbjct 74 CAATCGCTTTTGACGGAAGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACG 15 Query 6235 AGACAGGTGGACGA 6248 | ||||| |||||| Sbjct 14 AAACAGGGGGACGA 1 >seq521066 Length=280 Score = 199 bits (220), Expect = 1e-46 Identities = 208/273 (76%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 21317 CATGGAATCGAACAGCTACCGAACGACCCTGCATGAGCTGATCAGACAGCTTGTTATTGC 21376 ||||||| | ||||| ||||| || || |||| |||||||| | ||| | || || || Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60 Query 21377 TGGGGCCGCGCTGCTGTATTTGCCTCCACCAGACGGTGCCTCTACGGGGTCCCCGATGAA 21436 |||| | | |||||||| | || || || || ||| | | ||| ||| ||||| Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGGAGCCCTATGAA 120 Query 21437 GCTCTATACGCTGCACAACCACTGCGTCCAACGTGACGCCTTCGGTAACGTGCTGCAAGT 21496 |||||| ||||||||||||||| |||||||| ||| ||||||| ||||| || || | Sbjct 121 GCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACAGAT 180 Query 21497 CATTACGCTCGACAAGGTGGCCTATGCGGCCCTTCCAGAGGACGTAAGGACCAAGCTCGA 21556 | ||||||||||||||||||||| |||||||||||| || ||||| || |||| || || Sbjct 181 CGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCGGTCCAAACTTGA 240 Query 21557 TGGGGACCGCAAGCCTGACGAAGAGGTCGAGGT 21589 || || | ||||| || |||||| |||| || Sbjct 241 CGGAGAGCATAAGCCCGATGAAGAGATCGAAGT 273 >seq518992 Length=261 Score = 154 bits (170), Expect = 4e-33 Identities = 191/258 (74%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 11534 GCTGCCCCTTACGCCTCCCTGCAAAAGCCGGACTTCGGTAATGACCAGTTCCCTCAGCCC 11593 |||||||| || || | | |||||||| |||||||| | ||||||| || || Sbjct 256 GCTGCCCCATATGCGGCGATCCAAAAGCCCGACTTCGGCACCACTGAGTTCCCACAACCT 197 Query 11594 CGTGGCGAGTACAAGGTCAACCTGATCGTGCCCATGAAGCAAGCCGCGCCGCTGATCGCT 11653 ||||||||||||||||| |||||||||||| || ||||| | || ||||| | Sbjct 196 CGTGGCGAGTACAAGGTGAACCTGATCGTGTCCTTGAAGGATGCACAA--GCTGACATCA 139 Query 11654 AA-GCTTCAG-AAGATCGCCGATGACTCTTACGCGGAGATGGTCGCCGAGAACGAAGCGA 11711 | || ||| ||||| ||| ||||| ||||| ||| | | || || ||||||||| Sbjct 138 AGCGCATCACCAAGATTTACGAGGACTCCTACGCCGAGTTCTTGGCTGAACACGAAGCGA 79 Query 11712 ACCCGCCGAAGGTCGCCGCTGGTAAACGCCCCGTGCCCGTTCGTCAAGGCGATATGCCGT 11771 ||||||| |||||||| ||||| || || ||||| || || |||||||| || | |||| Sbjct 78 ACCCGCCAAAGGTCGCTGCTGGCAAGCGTCCCGTACCGGTCCGTCAAGGTGACCTTCCGT 19 Query 11772 GGTTCGAGGATGGGAACG 11789 |||||||| || |||| Sbjct 18 TCTTCGAGGACGGCAACG 1 >seq501937 Length=338 Score = 109 bits (120), Expect = 1e-19 Identities = 184/260 (71%), Gaps = 15/260 (6%) Strand=Plus/Plus Query 35159 GATCAAGCCTACATGAACAGCTTCTACAACGGCCTTCGTGGCGTTATCCCCAACGACCCT 35218 || |||| ||||||| ||| |||||||||| || ||||| | |||| |||||||| Sbjct 90 GACCAAGAGTACATGACCAGTCTCTACAACGGGCTCCGTGGGATCATCCT-AACGACCCG 148 Query 35219 GCCACTCAGTACCTGTTCATGAAGATCATGGAGTCTGAGGGCATTCAGGCCCGTTAGAAA 35278 ||| |||||| ||| | |||||||||||||| |||| || | || || | ||| Sbjct 149 GCCTCTCAGTTCCTCCTGATGAAGATCATGGAAGAGCAGGGTATCGAAGCACGGT--AAA 206 Query 35279 TCCCCTCACTAAAACAGGGACGCTATCACAGGTCCCATTCACTATTCCTATAAGGAGGCC 35338 || ||||| | || |||| ||| ||||| |||| | |||| |||||||| || Sbjct 207 ACCACTCACCTATACCGGGA-GCTTGCACAGCTCCCCT------TTCC-ATAAGGAGACC 258 Query 35339 -CAATGGC---TACACCTAAAACGGTCAAGACGTACCCTCTCGACGGTGTGCAGAAGGAC 35394 | ||||| | || || || ||| | |||| || || ||||||| | | ||| Sbjct 259 TCTATGGCACTCGCTCCAAAGACTGTCTTGGCGTATCCGCTTGACGGTGCGAATCGAGAC 318 Query 35395 TTTGAGATCCCCTTTGAATA 35414 || | ||||||||||||||| Sbjct 319 TTCGTGATCCCCTTTGAATA 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131487918645552