Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_023005.1
Length=41386
Score E
Sequences producing significant alignments: (Bits) Value
seq512931 601 9e-168
seq500082 230 6e-56
seq521066 199 1e-46
seq518992 154 4e-33
seq501937 109 1e-19
>seq512931
Length=538
Score = 601 bits (666), Expect = 9e-168
Identities = 456/538 (85%), Gaps = 0/538 (0%)
Strand=Plus/Plus
Query 39183 CCTGCCCGACCGGACCACTCACCATCCGTGAAGTCCGTGGGCGTGACCGGGGGCATGACT 39242
||||| || || |||||| || || |||||||||||||| || || || || ||||||
Sbjct 1 CCTGCTCGTCCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACT 60
Query 39243 GGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTTCCCGGTAACTCTGGCACA 39302
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 61 GGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACA 120
Query 39303 CAGTCCGCTCGGGATCACCTTGGCGAGCTGGTGAAGGAGTTCGATGCGATCCTGAAGCCT 39362
|||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 CAGTCCGCAAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCT 180
Query 39363 GACGGCACGATCATCTATCTGGGCACACCACAGACCGAAATGACCCTTTACCGGGAACTT 39422
||||| ||||||||||| |||| || |||||||||||||||||||| ||| ||||||||
Sbjct 181 GACGGTACGATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTT 240
Query 39423 GAGGACCGTGGCTACACGACGACCATCTGGCCTGCCCGGTATCCGCGTGACGTGGCCGAT 39482
|||||||| |||||| ||||||| ||||||||||| || || || || || ||||| ||
Sbjct 241 GAGGACCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGAC 300
Query 39483 ATGGAGACGTATTGGCACGCTAAGGGCGCACGGAGTCGCCTTGACCCTACGATGCTCAAA 39542
| ||| | || |||||||| |||||| || || || |||| ||| ||||||||
Sbjct 301 CTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAG 360
Query 39543 GAGCTTGAGGCTGACCCGTCCCTCTTCTGGAAGCCTACAGACCCTATTCGCTTCGATGAT 39602
||||| || | ||| | || |||||||||||||||||||||||||| |||||||||
Sbjct 361 GAGCTGGAAGACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGAT 420
Query 39603 GAGGACTTGCGGGAACGTGAGCTGTCCTATGGTAAGGGCGGCTTTGCTCTACAGTTCATG 39662
|| ||| |||| || || || || || ||||| ||||| ||||| |||||||||||||||
Sbjct 421 GAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATG 480
Query 39663 CTTAACCCGAACCTTAGCGACATCGAGAAGTACCCTCTCAAGCTGCGGGATTGGATCG 39720
|| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 481 CTCAACCCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538
>seq500082
Length=313
Score = 230 bits (254), Expect = 6e-56
Identities = 242/314 (77%), Gaps = 6/314 (2%)
Strand=Plus/Minus
Query 5938 AAGATGGCATCAAGTGGCTGATGATCCACGGTGCCAATACCGCTGGCGTAGATAAGGTTC 5997
||||||| || | ||||| ||||| ||||| ||||| || ||||| || |||||||| |
Sbjct 311 AAGATGGTATTCAATGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTCC 252
Query 5998 CTTTCGATGAACGGCAACAATGGGTTCGAGACAA--CACAGACTGCATCCTCCGTTGCGC 6055
|||||||| |||| | ||||||||||| ||||| | |||| |||||||| |||||
Sbjct 251 CTTTCGATCAACGCAAGCAATGGGTTCGTGACAATGAATCGACT--ATCCTCCGATGCGC 194
Query 6056 TGAAGACCCACTTCAGAACACAGAATGGATGTCAATGGATTCTCCCTTTTGCTTCCTTGC 6115
||||||||| || |||| || |||||| ||||| || ||||| || ||| | ||
Sbjct 193 TGAAGACCCGCTCACTCACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGC 134
Query 6116 CTTCTGTTTTGAGTGGGCTGGAGTC-TGCGCGAATGGTGAGAAACACGTATCAGCCCTGC 6174
||||| || |||||||| || ||| | |||| |||| | |||| ||| || || |
Sbjct 133 GTTCTGCTTCGAGTGGGCCGGTGTCGTTCGCG-ATGGAGCTGCACACCGATCCGCTCTAC 75
Query 6175 CTATCGCTTTTGACGGAAGTTGCTCGGGAATTCAGCACTTTTCTGCGATGCTTCGAGATG 6234
| ||||||||||||||||| || ||||| || ||||| |||||||| ||||| || || |
Sbjct 74 CAATCGCTTTTGACGGAAGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACG 15
Query 6235 AGACAGGTGGACGA 6248
| ||||| ||||||
Sbjct 14 AAACAGGGGGACGA 1
>seq521066
Length=280
Score = 199 bits (220), Expect = 1e-46
Identities = 208/273 (76%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 21317 CATGGAATCGAACAGCTACCGAACGACCCTGCATGAGCTGATCAGACAGCTTGTTATTGC 21376
||||||| | ||||| ||||| || || |||| |||||||| | ||| | || || ||
Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60
Query 21377 TGGGGCCGCGCTGCTGTATTTGCCTCCACCAGACGGTGCCTCTACGGGGTCCCCGATGAA 21436
|||| | | |||||||| | || || || || ||| | | ||| ||| |||||
Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGGAGCCCTATGAA 120
Query 21437 GCTCTATACGCTGCACAACCACTGCGTCCAACGTGACGCCTTCGGTAACGTGCTGCAAGT 21496
|||||| ||||||||||||||| |||||||| ||| ||||||| ||||| || || |
Sbjct 121 GCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACAGAT 180
Query 21497 CATTACGCTCGACAAGGTGGCCTATGCGGCCCTTCCAGAGGACGTAAGGACCAAGCTCGA 21556
| ||||||||||||||||||||| |||||||||||| || ||||| || |||| || ||
Sbjct 181 CGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCGGTCCAAACTTGA 240
Query 21557 TGGGGACCGCAAGCCTGACGAAGAGGTCGAGGT 21589
|| || | ||||| || |||||| |||| ||
Sbjct 241 CGGAGAGCATAAGCCCGATGAAGAGATCGAAGT 273
>seq518992
Length=261
Score = 154 bits (170), Expect = 4e-33
Identities = 191/258 (74%), Gaps = 4/258 (2%)
Strand=Plus/Minus
Query 11534 GCTGCCCCTTACGCCTCCCTGCAAAAGCCGGACTTCGGTAATGACCAGTTCCCTCAGCCC 11593
|||||||| || || | | |||||||| |||||||| | ||||||| || ||
Sbjct 256 GCTGCCCCATATGCGGCGATCCAAAAGCCCGACTTCGGCACCACTGAGTTCCCACAACCT 197
Query 11594 CGTGGCGAGTACAAGGTCAACCTGATCGTGCCCATGAAGCAAGCCGCGCCGCTGATCGCT 11653
||||||||||||||||| |||||||||||| || ||||| | || ||||| |
Sbjct 196 CGTGGCGAGTACAAGGTGAACCTGATCGTGTCCTTGAAGGATGCACAA--GCTGACATCA 139
Query 11654 AA-GCTTCAG-AAGATCGCCGATGACTCTTACGCGGAGATGGTCGCCGAGAACGAAGCGA 11711
| || ||| ||||| ||| ||||| ||||| ||| | | || || |||||||||
Sbjct 138 AGCGCATCACCAAGATTTACGAGGACTCCTACGCCGAGTTCTTGGCTGAACACGAAGCGA 79
Query 11712 ACCCGCCGAAGGTCGCCGCTGGTAAACGCCCCGTGCCCGTTCGTCAAGGCGATATGCCGT 11771
||||||| |||||||| ||||| || || ||||| || || |||||||| || | ||||
Sbjct 78 ACCCGCCAAAGGTCGCTGCTGGCAAGCGTCCCGTACCGGTCCGTCAAGGTGACCTTCCGT 19
Query 11772 GGTTCGAGGATGGGAACG 11789
|||||||| || ||||
Sbjct 18 TCTTCGAGGACGGCAACG 1
>seq501937
Length=338
Score = 109 bits (120), Expect = 1e-19
Identities = 184/260 (71%), Gaps = 15/260 (6%)
Strand=Plus/Plus
Query 35159 GATCAAGCCTACATGAACAGCTTCTACAACGGCCTTCGTGGCGTTATCCCCAACGACCCT 35218
|| |||| ||||||| ||| |||||||||| || ||||| | |||| ||||||||
Sbjct 90 GACCAAGAGTACATGACCAGTCTCTACAACGGGCTCCGTGGGATCATCCT-AACGACCCG 148
Query 35219 GCCACTCAGTACCTGTTCATGAAGATCATGGAGTCTGAGGGCATTCAGGCCCGTTAGAAA 35278
||| |||||| ||| | |||||||||||||| |||| || | || || | |||
Sbjct 149 GCCTCTCAGTTCCTCCTGATGAAGATCATGGAAGAGCAGGGTATCGAAGCACGGT--AAA 206
Query 35279 TCCCCTCACTAAAACAGGGACGCTATCACAGGTCCCATTCACTATTCCTATAAGGAGGCC 35338
|| ||||| | || |||| ||| ||||| |||| | |||| |||||||| ||
Sbjct 207 ACCACTCACCTATACCGGGA-GCTTGCACAGCTCCCCT------TTCC-ATAAGGAGACC 258
Query 35339 -CAATGGC---TACACCTAAAACGGTCAAGACGTACCCTCTCGACGGTGTGCAGAAGGAC 35394
| ||||| | || || || ||| | |||| || || ||||||| | | |||
Sbjct 259 TCTATGGCACTCGCTCCAAAGACTGTCTTGGCGTATCCGCTTGACGGTGCGAATCGAGAC 318
Query 35395 TTTGAGATCCCCTTTGAATA 35414
|| | |||||||||||||||
Sbjct 319 TTCGTGATCCCCTTTGAATA 338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 131487918645552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |