Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_023556.1
Length=72329
Score E
Sequences producing significant alignments: (Bits) Value
seq488807 105 3e-18
seq512587 104 1e-17
seq486019 95.1 6e-15
seq514610 91.5 7e-14
>seq488807
Length=774
Score = 105 bits (116), Expect = 3e-18
Identities = 269/402 (67%), Gaps = 18/402 (4%)
Strand=Plus/Minus
Query 67500 GCTCGCAACTACCATCCACCCAGAACCAGTCGCCAT-TG-GCATTGTAAGC--CCAGACA 67555
|||||||| |||| || ||||||||||| |||| || || ||||| ||| |||
Sbjct 487 GCTCGCAAATACCGTCTACCCAGAACCACGTACCATCTGAGC----TAAGCGCCCATACA 432
Query 67556 GAGATTACCGTGTAGTCGGCGGTCTGCTTGTCAGAGGTAGCAAAGTCAGTGGTGATGTAG 67615
|| ||||| | ||||| | || || |||||||| ||||| || || |||||||||
Sbjct 431 GATATTACGCTAAAGTCGCTAGCCTCTTTTTCAGAGGTTGCAAAATCCGTAGTGATGTAG 372
Query 67616 AAGTTGTACTGGCTCTTCATCCGCAGCAACTGC-TGACGGCTGTACCACTGAATCTCCCC 67674
||||||||| | |||| | | | || ||| | ||| |||||| | |||||| |
Sbjct 371 AAGTTGTAC-GCGTCTTTACTCTTAAGAAGTGCATTACGTGCGTACCAATTAATCTCACT 313
Query 67675 TTCTTGCACCAGACGTTCTTCCTCGGACGTGATGCGCAGCATCAGTTCCTGGTT----GA 67730
|||| | | | ||||| || ||| | || | ||||||| || ||||| ||
Sbjct 312 ATCTTTAATTAATCTGTCTTCTTCTGACATAATTCTTAGCATCAACTCTTGGTTAAAAGA 253
Query 67731 AGCCTGAGACCTTGCCCGTCTTGACGGCCATGTCGTACTGGTCCTTGACGTACTGGTAGC 67790
| || ||||| || | || || || || ||| || | | | || || | ||
Sbjct 252 ATCC----ACCTTACCTGCTTTAACAGCTTTGGTGTATTGCTTCATTACATAGTCATACG 197
Query 67791 TGAAGCGATCTTCCCAGGCACCCACGAATTCTTCTTTGGGGCAGGGGAACTTCTCGCACA 67850
|||||||||| ||| | || ||| |||||| | | || || || ||||| ||||
Sbjct 196 TGAAGCGATCAGGCCATGAGCCTTTGAACTCTTCTCTCGTACAAGGAAATTTCTCACACA 137
Query 67851 CCGGCCAGACGTTCACCGACCAGGCCCCCGATTCCACGGCTT 67892
| || | || || || |||| || || || || || ||||
Sbjct 136 CAGGGTACACATTTACGTACCAAGCTCCTGACTCAACTGCTT 95
>seq512587
Length=355
Score = 104 bits (114), Expect = 1e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 30567 GGATGGATCTTTGCTGGGCTTGACTTCGCCTCCTTAGAGGATCGAATCTCCGCCCTGACG 30626
|| ||||| | ||||| ||||| | || ||||| ||| |||| || || || ||
Sbjct 178 GGTTGGATATGGGCTGGCGCAGACTTTTCATCTTTAGAAGATAGAATTTCAGCTCTAACA 237
Query 30627 ACTCGTGACCCGATGAAGCTGAAGGTATACACCGACGGCTATGATGGTCACTGTCTCCGT 30686
|||||||| || | ||||| ||||| |||||||| || ||||||||||||||||| ||
Sbjct 238 ACTCGTGATCCAAATAAGCTAAAGGTGTACACCGATGGTTATGATGGTCACTGTCTACGA 297
Query 30687 GCATACACTTACTTCGG 30703
|| || ||||||||||
Sbjct 298 GCCTATTCTTACTTCGG 314
>seq486019
Length=823
Score = 95.1 bits (104), Expect = 6e-15
Identities = 153/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 67512 CATCCACCCAGAACCAGTCGCCATTGGCATTGTAAGCCCAGACAGAGATTACCGTGTAGT 67571
|||| ||||||||||| || |||||| |||||||||||| ||||| | || || | |
Sbjct 1 CATCAACCCAGAACCAATCACCATTGTTATTGTAAGCCCACACAGATAAAACACTGAAAT 60
Query 67572 CGGCGGTCTGCTTGTCAGAGGTAGCAAAGTCAGTGGTGATGTAGAAGTTGTACTGGCTCT 67631
| || | ||| ||| || ||||||||||| || || ||||||||| ||| | |
Sbjct 61 CCGCAGAGGTCTTTTCACTAGTTGCAAAGTCAGTTGTTATATAGAAGTTGAACTTACCTT 120
Query 67632 TCATCCGCAGCAACTGCTGACGGCTGTACCACTGAATCTCCCCTTCTTGCACCAGACGTT 67691
| | | | ||| | | |||||||| | ||| || | ||||| | ||||| |
Sbjct 121 TATTTTTTAATACAAGCTCATGTCTGTACCAGTTAATATCACAATCTTGAATTAGACGAT 180
Query 67692 CTTCCTCGGACGTGATGCGCAGCATCAGTTCCTGGTTGAA 67731
| || || ||| |||| || | ||| || || ||||| ||
Sbjct 181 CCTCGTCTGACATGATTCGTAACATAAGCTCTTGGTTAAA 220
>seq514610
Length=413
Score = 91.5 bits (100), Expect = 7e-14
Identities = 109/147 (74%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 30558 GCTCCACCTGGATGGATCTTTGCTGGG-CTTGACTTCGCCTCCTTAGAGGATCGAATCTC 30616
|| ||| ||||||| |||| | |||| || ||||||||||| ||||||||| |||||||
Sbjct 99 GCGCCAGATGGATGGTTCTTAGTTGGGGCTGGACTTCGCCTCGTTAGAGGATAGAATCTC 158
Query 30617 CGCCCTGACGACTCGTGACCCGATGAAGCTGAAGGTATACACCGACGGCTATGATGGTCA 30676
|| || || || ||||| | || | || || ||||| || ||||||||||| ||
Sbjct 159 TGCACTAACAACCAAGGACCCCAATAAATTAAAAGTTTACACAGATGGCTATGATGGCCA 218
Query 30677 CTGTCTCCGTGCATACACTTACTTCGG 30703
|| | || |||| || ||| || ||
Sbjct 219 TTGCTTACGAGCATTCAGTTATTTTGG 245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 229846446956380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |