Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023556.1 Length=72329 Score E Sequences producing significant alignments: (Bits) Value seq488807 105 3e-18 seq512587 104 1e-17 seq486019 95.1 6e-15 seq514610 91.5 7e-14 >seq488807 Length=774 Score = 105 bits (116), Expect = 3e-18 Identities = 269/402 (67%), Gaps = 18/402 (4%) Strand=Plus/Minus Query 67500 GCTCGCAACTACCATCCACCCAGAACCAGTCGCCAT-TG-GCATTGTAAGC--CCAGACA 67555 |||||||| |||| || ||||||||||| |||| || || ||||| ||| ||| Sbjct 487 GCTCGCAAATACCGTCTACCCAGAACCACGTACCATCTGAGC----TAAGCGCCCATACA 432 Query 67556 GAGATTACCGTGTAGTCGGCGGTCTGCTTGTCAGAGGTAGCAAAGTCAGTGGTGATGTAG 67615 || ||||| | ||||| | || || |||||||| ||||| || || ||||||||| Sbjct 431 GATATTACGCTAAAGTCGCTAGCCTCTTTTTCAGAGGTTGCAAAATCCGTAGTGATGTAG 372 Query 67616 AAGTTGTACTGGCTCTTCATCCGCAGCAACTGC-TGACGGCTGTACCACTGAATCTCCCC 67674 ||||||||| | |||| | | | || ||| | ||| |||||| | |||||| | Sbjct 371 AAGTTGTAC-GCGTCTTTACTCTTAAGAAGTGCATTACGTGCGTACCAATTAATCTCACT 313 Query 67675 TTCTTGCACCAGACGTTCTTCCTCGGACGTGATGCGCAGCATCAGTTCCTGGTT----GA 67730 |||| | | | ||||| || ||| | || | ||||||| || ||||| || Sbjct 312 ATCTTTAATTAATCTGTCTTCTTCTGACATAATTCTTAGCATCAACTCTTGGTTAAAAGA 253 Query 67731 AGCCTGAGACCTTGCCCGTCTTGACGGCCATGTCGTACTGGTCCTTGACGTACTGGTAGC 67790 | || ||||| || | || || || || ||| || | | | || || | || Sbjct 252 ATCC----ACCTTACCTGCTTTAACAGCTTTGGTGTATTGCTTCATTACATAGTCATACG 197 Query 67791 TGAAGCGATCTTCCCAGGCACCCACGAATTCTTCTTTGGGGCAGGGGAACTTCTCGCACA 67850 |||||||||| ||| | || ||| |||||| | | || || || ||||| |||| Sbjct 196 TGAAGCGATCAGGCCATGAGCCTTTGAACTCTTCTCTCGTACAAGGAAATTTCTCACACA 137 Query 67851 CCGGCCAGACGTTCACCGACCAGGCCCCCGATTCCACGGCTT 67892 | || | || || || |||| || || || || || |||| Sbjct 136 CAGGGTACACATTTACGTACCAAGCTCCTGACTCAACTGCTT 95 >seq512587 Length=355 Score = 104 bits (114), Expect = 1e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 30567 GGATGGATCTTTGCTGGGCTTGACTTCGCCTCCTTAGAGGATCGAATCTCCGCCCTGACG 30626 || ||||| | ||||| ||||| | || ||||| ||| |||| || || || || Sbjct 178 GGTTGGATATGGGCTGGCGCAGACTTTTCATCTTTAGAAGATAGAATTTCAGCTCTAACA 237 Query 30627 ACTCGTGACCCGATGAAGCTGAAGGTATACACCGACGGCTATGATGGTCACTGTCTCCGT 30686 |||||||| || | ||||| ||||| |||||||| || ||||||||||||||||| || Sbjct 238 ACTCGTGATCCAAATAAGCTAAAGGTGTACACCGATGGTTATGATGGTCACTGTCTACGA 297 Query 30687 GCATACACTTACTTCGG 30703 || || |||||||||| Sbjct 298 GCCTATTCTTACTTCGG 314 >seq486019 Length=823 Score = 95.1 bits (104), Expect = 6e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 67512 CATCCACCCAGAACCAGTCGCCATTGGCATTGTAAGCCCAGACAGAGATTACCGTGTAGT 67571 |||| ||||||||||| || |||||| |||||||||||| ||||| | || || | | Sbjct 1 CATCAACCCAGAACCAATCACCATTGTTATTGTAAGCCCACACAGATAAAACACTGAAAT 60 Query 67572 CGGCGGTCTGCTTGTCAGAGGTAGCAAAGTCAGTGGTGATGTAGAAGTTGTACTGGCTCT 67631 | || | ||| ||| || ||||||||||| || || ||||||||| ||| | | Sbjct 61 CCGCAGAGGTCTTTTCACTAGTTGCAAAGTCAGTTGTTATATAGAAGTTGAACTTACCTT 120 Query 67632 TCATCCGCAGCAACTGCTGACGGCTGTACCACTGAATCTCCCCTTCTTGCACCAGACGTT 67691 | | | | ||| | | |||||||| | ||| || | ||||| | ||||| | Sbjct 121 TATTTTTTAATACAAGCTCATGTCTGTACCAGTTAATATCACAATCTTGAATTAGACGAT 180 Query 67692 CTTCCTCGGACGTGATGCGCAGCATCAGTTCCTGGTTGAA 67731 | || || ||| |||| || | ||| || || ||||| || Sbjct 181 CCTCGTCTGACATGATTCGTAACATAAGCTCTTGGTTAAA 220 >seq514610 Length=413 Score = 91.5 bits (100), Expect = 7e-14 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 30558 GCTCCACCTGGATGGATCTTTGCTGGG-CTTGACTTCGCCTCCTTAGAGGATCGAATCTC 30616 || ||| ||||||| |||| | |||| || ||||||||||| ||||||||| ||||||| Sbjct 99 GCGCCAGATGGATGGTTCTTAGTTGGGGCTGGACTTCGCCTCGTTAGAGGATAGAATCTC 158 Query 30617 CGCCCTGACGACTCGTGACCCGATGAAGCTGAAGGTATACACCGACGGCTATGATGGTCA 30676 || || || || ||||| | || | || || ||||| || ||||||||||| || Sbjct 159 TGCACTAACAACCAAGGACCCCAATAAATTAAAAGTTTACACAGATGGCTATGATGGCCA 218 Query 30677 CTGTCTCCGTGCATACACTTACTTCGG 30703 || | || |||| || ||| || || Sbjct 219 TTGCTTACGAGCATTCAGTTATTTTGG 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229846446956380