Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq449735 176 7e-39 seq516580 172 9e-38 seq511551 111 2e-19 seq509673 107 3e-18 seq453744 93.3 7e-14 seq450559 93.3 7e-14 >seq449735 Length=3187 Score = 176 bits (194), Expect = 7e-39 Identities = 293/411 (71%), Gaps = 18/411 (4%) Strand=Plus/Plus Query 78652 AAACTTTCATTACCGACACCGATTATGGCAGGCGTTCGTACCCCGACACGCCAGTTTAGT 78711 ||| ||||| |||| || || ||||||||||| |||||||| || |||||||||||||| Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84 Query 78712 TCGTGTGTTAAGATTGAATCAGGCGACT-CTTTGCATTCAATCAATG--AAGTGG-CTAA 78767 |||||||| || || | |||||| | ||| ||||||| || | | | | || Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTG-ATTCAATTAACGCCACCTCGTCTG- 142 Query 78768 ATCAATTGTAAGTTACAT-TAGTAAGCGTGCAGGTATCGGTGTTAACGGCGGTGCGATTC 78826 ||||||| | ||| | | | || ||||| || || || |||||| ||| |||| Sbjct 143 --CAATTGTTAAATACGTATCGCAA-CGTGCCGGCATTGGCATTAACGCAGGTCGCATTC 199 Query 78827 GTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAGATTCGT--CACACTGGTGTAATTCCA 78882 |||| | ||| || | |||| || | || ||| || || ||| ||||| Sbjct 200 GTGC--ACTGGGTAGCCACATTCG--CAATGGCGAAGCGTACCATACGGGTTGTATTCCT 255 Query 78883 TTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGGGGT 78942 || | || ||||||||||| ||||||||| ||||| ||||| ||||||||||| || Sbjct 256 TTTTATAAGCACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGC 315 Query 78943 GCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAAAAACTGTTAGTTCTGAAG 79002 || || || | |||||| ||||||| |||||||| ||||| |||||||| || || Sbjct 316 GCAGCAACCTTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAA 375 Query 79003 AACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGACTACAGTGTA 79053 || ||| || ||||| || ||||| | |||||| | || ||| | ||| Sbjct 376 AATAACCGCGGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTA 426 >seq516580 Length=413 Score = 172 bits (190), Expect = 9e-38 Identities = 160/201 (80%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 187609 CTACGCCATCAAAAAGTTAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTT 187668 ||||| ||||||| ||||||| |||||||||| | ||||||||||| ||||| ||||| Sbjct 302 CTACGACATCAAACAGTTAGCAGTTGAATGTGCTACCAAGCGTATGTATCCAGATATTTT 243 Query 187669 GAACTATGACAAACTAGTTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGCTC 187728 |||||| ||||| |||||||||| ||||||||||| |||| |||||||||||||| || Sbjct 242 GAACTACGACAAGTTAGTTGAAACTACTGGTGGGTTCAAGTACCCAATGGGCTGTCGTTC 183 Query 187729 ATTCTTGGGTGACTGG-AAGAAC--GAAGATGGTGAAACGGTATTCGATGGTCGTAATAA 187785 |||| | || ||| ||| | | | |||||| | |||| ||||| |||||||| Sbjct 182 ATTCCTACACGAATGGTCAGACCCAGTAACAGGTGAACCAGTATATGATGGACGTAATAA 123 Query 187786 CTTAGGCGTCGTCTCAATCAA 187806 ||| || || || |||||||| Sbjct 122 CTTGGGTGTTGTATCAATCAA 102 >seq511551 Length=634 Score = 111 bits (122), Expect = 2e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 187454 TTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTCAAAAAAGTATTCTTCAGAATCGT 187513 || || |||||||| | ||||| || || ||||| ||| || ||| || ||| Sbjct 131 TTTGGTTTAGGTACTTGTTGGGAGTCTAAGCTAATTCAGAAATCCATCCTTGAGGTGCGT 190 Query 187514 ATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATTTTCCCTAAGCTTGTTTTCACATTG 187573 ||| ||| ||||| | |||| || || | |||||||||||| | | || | Sbjct 191 ATTAAAGGCTTAGGTGCATCAAAGAGGACAGCGGTATTCCCTAAGCTTATCCTAACTATT 250 Query 187574 AGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGCTACGCCATCAAAAAGTTAGCTCTT 187633 | |||||| || ||| | ||| | | ||||| ||| || ||| |||||||||| Sbjct 251 AAAGACGGTGTCAACTTTAAACAGGAAGACCCAAACTATAATATTAAACAGTTAGCTCTA 310 Query 187634 GAATGTGCAAGTAAGCGTATGTACCCAGACATTTTGAACTATGACAAACTAGTTGAAACG 187693 || ||||| ||||||||||||||||| || ||| | ||||| || || | || || Sbjct 311 GAGTGTGCCAGTAAGCGTATGTACCCTGATATTATCAACTACGATAAGATTGTAGAGGTT 370 Query 187694 ACTGGTGGGTTTAAGTCTCCAATGGGCTG 187722 |||||||| |||||| | |||||||| Sbjct 371 ACTGGTGGTTTTAAGGCAAGCATGGGCTG 399 >seq509673 Length=441 Score = 107 bits (118), Expect = 3e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 78877 ATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGT 78936 || ||||||| |||| || |||||||| ||||||| || || ||||| || || ||| Sbjct 406 ATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAAGGCGGCGTCCGT 347 Query 78937 GGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAAAAACTGTTAGTT 78996 || ||||| ||||| | |||||| | ||||| ||||||||||| | | || || Sbjct 346 GGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAGTCATTATTGGTA 287 Query 78997 CTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGACTACAGTGTA 79053 ||||| || ||| || || ||||| |||||| | |||||| | || ||| | ||| Sbjct 286 CTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGATTACGGCGTA 230 >seq453744 Length=292 Score = 93.3 bits (102), Expect = 7e-14 Identities = 141/193 (73%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 8042 AAACACCAACTATTGACAGTCTCATGCAATACATCGTGTCATTCCGTAAAGAGAATCATT 8101 ||| ||||||| ||| || | || ||||| || ||||| ||||| | |||| Sbjct 273 AAATACCAACTGCTGAATCACTATTCCAGTACATTGTTAGTTTCCGCAAAGAAGACCATT 214 Query 8102 TCCATGAAGAATGTGT-TGAAATGATTTACAAAGCGTT-ACTTGATAAGTTCGACCCACA 8159 | || |||||| || | ||| ||||||| ||| ||||| | |||| ||||| | || | Sbjct 213 TTCACGAAGAA-GTATGTGAGATGATTTTCAA-GCGTTTATTTGACAAGTTTCAGCCTGA 156 Query 8160 AGAGCTTATGGTAAC-AGCGTTATACACACGTCGCGGCGGTTGGAATATCTGCCCAGCAC 8218 ||||||||||||||| ||||| || |||||||| || ||| |||| |||||||| Sbjct 155 AGAGCTTATGGTAACTTGCGTT-TATACACGTCGAGGTGGTATTGATATTTGCCCAGCTA 97 Query 8219 GTGCAACGCATGA 8231 | |||| ||||| Sbjct 96 GATCAACACATGA 84 >seq450559 Length=633 Score = 93.3 bits (102), Expect = 7e-14 Identities = 143/199 (72%), Gaps = 10/199 (5%) Strand=Plus/Plus Query 187067 TTATTCCCGCAATTCAACTGTATGCTTATTGATATCAAAGGCATGTTTGAAGGC--GGTT 187124 || |||||| || ||||| ||||| |||||| | |||||||| || | |||| Sbjct 14 TTTTTCCCGATGTTTAACTGCATGCTAATTGATTTGGCCGGCATGTT--AACTCATGGTT 71 Query 187125 TCAAAATGGGTAATGCTGAAATCGAAGAACCAAACAGTATTAGCACTGCTGCCACTGTTG 187184 | |||||||||||||||||||| ||| || || || || || ||||||||| || Sbjct 72 TTAAAATGGGTAATGCTGAAATAGAACCGCCTAAGTCTA-TATCA--ACTGCCACTGCTG 128 Query 187185 TAA---CTCAGATTATTCAGCAAGTAAGTAGCCATATCTACGGCGGTAACACGATCAATA 187241 | | | || |||||| || ||| |||||||| || || |||| |||||| || Sbjct 129 TTACGGCGCAAATTATTGCTCAGGTAGCGAGCCATATTTATGGTGGTACCACGATTAACC 188 Query 187242 GAATCGACGAAGTCCTAGC 187260 | ||||||||||| |||| Sbjct 189 GTATCGACGAAGTGTTAGC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784966437766080