Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_023568.1
Length=246964
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 176 7e-39
seq516580 172 9e-38
seq511551 111 2e-19
seq509673 107 3e-18
seq453744 93.3 7e-14
seq450559 93.3 7e-14
>seq449735
Length=3187
Score = 176 bits (194), Expect = 7e-39
Identities = 293/411 (71%), Gaps = 18/411 (4%)
Strand=Plus/Plus
Query 78652 AAACTTTCATTACCGACACCGATTATGGCAGGCGTTCGTACCCCGACACGCCAGTTTAGT 78711
||| ||||| |||| || || ||||||||||| |||||||| || ||||||||||||||
Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84
Query 78712 TCGTGTGTTAAGATTGAATCAGGCGACT-CTTTGCATTCAATCAATG--AAGTGG-CTAA 78767
|||||||| || || | |||||| | ||| ||||||| || | | | | ||
Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTG-ATTCAATTAACGCCACCTCGTCTG- 142
Query 78768 ATCAATTGTAAGTTACAT-TAGTAAGCGTGCAGGTATCGGTGTTAACGGCGGTGCGATTC 78826
||||||| | ||| | | | || ||||| || || || |||||| ||| ||||
Sbjct 143 --CAATTGTTAAATACGTATCGCAA-CGTGCCGGCATTGGCATTAACGCAGGTCGCATTC 199
Query 78827 GTGCTGAAGGGGCAGTCG--TTCGTTCAGGTGAGATTCGT--CACACTGGTGTAATTCCA 78882
|||| | ||| || | |||| || | || ||| || || ||| |||||
Sbjct 200 GTGC--ACTGGGTAGCCACATTCG--CAATGGCGAAGCGTACCATACGGGTTGTATTCCT 255
Query 78883 TTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGGGGT 78942
|| | || ||||||||||| ||||||||| ||||| ||||| ||||||||||| ||
Sbjct 256 TTTTATAAGCACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGC 315
Query 78943 GCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAAAAACTGTTAGTTCTGAAG 79002
|| || || | |||||| ||||||| |||||||| ||||| |||||||| || ||
Sbjct 316 GCAGCAACCTTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAA 375
Query 79003 AACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGACTACAGTGTA 79053
|| ||| || ||||| || ||||| | |||||| | || ||| | |||
Sbjct 376 AATAACCGCGGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTA 426
>seq516580
Length=413
Score = 172 bits (190), Expect = 9e-38
Identities = 160/201 (80%), Gaps = 3/201 (1%)
Strand=Plus/Minus
Query 187609 CTACGCCATCAAAAAGTTAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTT 187668
||||| ||||||| ||||||| |||||||||| | ||||||||||| ||||| |||||
Sbjct 302 CTACGACATCAAACAGTTAGCAGTTGAATGTGCTACCAAGCGTATGTATCCAGATATTTT 243
Query 187669 GAACTATGACAAACTAGTTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGCTC 187728
|||||| ||||| |||||||||| ||||||||||| |||| |||||||||||||| ||
Sbjct 242 GAACTACGACAAGTTAGTTGAAACTACTGGTGGGTTCAAGTACCCAATGGGCTGTCGTTC 183
Query 187729 ATTCTTGGGTGACTGG-AAGAAC--GAAGATGGTGAAACGGTATTCGATGGTCGTAATAA 187785
|||| | || ||| ||| | | | |||||| | |||| ||||| ||||||||
Sbjct 182 ATTCCTACACGAATGGTCAGACCCAGTAACAGGTGAACCAGTATATGATGGACGTAATAA 123
Query 187786 CTTAGGCGTCGTCTCAATCAA 187806
||| || || || ||||||||
Sbjct 122 CTTGGGTGTTGTATCAATCAA 102
>seq511551
Length=634
Score = 111 bits (122), Expect = 2e-19
Identities = 186/269 (69%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 187454 TTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTCAAAAAAGTATTCTTCAGAATCGT 187513
|| || |||||||| | ||||| || || ||||| ||| || ||| || |||
Sbjct 131 TTTGGTTTAGGTACTTGTTGGGAGTCTAAGCTAATTCAGAAATCCATCCTTGAGGTGCGT 190
Query 187514 ATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATTTTCCCTAAGCTTGTTTTCACATTG 187573
||| ||| ||||| | |||| || || | |||||||||||| | | || |
Sbjct 191 ATTAAAGGCTTAGGTGCATCAAAGAGGACAGCGGTATTCCCTAAGCTTATCCTAACTATT 250
Query 187574 AGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGCTACGCCATCAAAAAGTTAGCTCTT 187633
| |||||| || ||| | ||| | | ||||| ||| || ||| ||||||||||
Sbjct 251 AAAGACGGTGTCAACTTTAAACAGGAAGACCCAAACTATAATATTAAACAGTTAGCTCTA 310
Query 187634 GAATGTGCAAGTAAGCGTATGTACCCAGACATTTTGAACTATGACAAACTAGTTGAAACG 187693
|| ||||| ||||||||||||||||| || ||| | ||||| || || | || ||
Sbjct 311 GAGTGTGCCAGTAAGCGTATGTACCCTGATATTATCAACTACGATAAGATTGTAGAGGTT 370
Query 187694 ACTGGTGGGTTTAAGTCTCCAATGGGCTG 187722
|||||||| |||||| | ||||||||
Sbjct 371 ACTGGTGGTTTTAAGGCAAGCATGGGCTG 399
>seq509673
Length=441
Score = 107 bits (118), Expect = 3e-18
Identities = 130/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 78877 ATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGT 78936
|| ||||||| |||| || |||||||| ||||||| || || ||||| || || |||
Sbjct 406 ATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAAGGCGGCGTCCGT 347
Query 78937 GGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGAAAAACTGTTAGTT 78996
|| ||||| ||||| | |||||| | ||||| ||||||||||| | | || ||
Sbjct 346 GGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAGTCATTATTGGTA 287
Query 78997 CTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGACTACAGTGTA 79053
||||| || ||| || || ||||| |||||| | |||||| | || ||| | |||
Sbjct 286 CTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGATTACGGCGTA 230
>seq453744
Length=292
Score = 93.3 bits (102), Expect = 7e-14
Identities = 141/193 (73%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 8042 AAACACCAACTATTGACAGTCTCATGCAATACATCGTGTCATTCCGTAAAGAGAATCATT 8101
||| ||||||| ||| || | || ||||| || ||||| ||||| | ||||
Sbjct 273 AAATACCAACTGCTGAATCACTATTCCAGTACATTGTTAGTTTCCGCAAAGAAGACCATT 214
Query 8102 TCCATGAAGAATGTGT-TGAAATGATTTACAAAGCGTT-ACTTGATAAGTTCGACCCACA 8159
| || |||||| || | ||| ||||||| ||| ||||| | |||| ||||| | || |
Sbjct 213 TTCACGAAGAA-GTATGTGAGATGATTTTCAA-GCGTTTATTTGACAAGTTTCAGCCTGA 156
Query 8160 AGAGCTTATGGTAAC-AGCGTTATACACACGTCGCGGCGGTTGGAATATCTGCCCAGCAC 8218
||||||||||||||| ||||| || |||||||| || ||| |||| ||||||||
Sbjct 155 AGAGCTTATGGTAACTTGCGTT-TATACACGTCGAGGTGGTATTGATATTTGCCCAGCTA 97
Query 8219 GTGCAACGCATGA 8231
| |||| |||||
Sbjct 96 GATCAACACATGA 84
>seq450559
Length=633
Score = 93.3 bits (102), Expect = 7e-14
Identities = 143/199 (72%), Gaps = 10/199 (5%)
Strand=Plus/Plus
Query 187067 TTATTCCCGCAATTCAACTGTATGCTTATTGATATCAAAGGCATGTTTGAAGGC--GGTT 187124
|| |||||| || ||||| ||||| |||||| | |||||||| || | ||||
Sbjct 14 TTTTTCCCGATGTTTAACTGCATGCTAATTGATTTGGCCGGCATGTT--AACTCATGGTT 71
Query 187125 TCAAAATGGGTAATGCTGAAATCGAAGAACCAAACAGTATTAGCACTGCTGCCACTGTTG 187184
| |||||||||||||||||||| ||| || || || || || ||||||||| ||
Sbjct 72 TTAAAATGGGTAATGCTGAAATAGAACCGCCTAAGTCTA-TATCA--ACTGCCACTGCTG 128
Query 187185 TAA---CTCAGATTATTCAGCAAGTAAGTAGCCATATCTACGGCGGTAACACGATCAATA 187241
| | | || |||||| || ||| |||||||| || || |||| |||||| ||
Sbjct 129 TTACGGCGCAAATTATTGCTCAGGTAGCGAGCCATATTTATGGTGGTACCACGATTAACC 188
Query 187242 GAATCGACGAAGTCCTAGC 187260
| ||||||||||| ||||
Sbjct 189 GTATCGACGAAGTGTTAGC 207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 784966437766080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |