Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023579.1 Length=75568 Score E Sequences producing significant alignments: (Bits) Value seq512587 116 2e-21 seq400345 113 2e-20 seq523657 109 3e-19 seq500342 105 3e-18 seq184512 105 3e-18 seq516110 96.9 2e-15 seq501051 84.2 1e-11 seq343004 82.4 4e-11 >seq512587 Length=355 Score = 116 bits (128), Expect = 2e-21 Identities = 225/328 (69%), Gaps = 3/328 (1%) Strand=Plus/Plus Query 31331 TGATGGTTGGCATTATCTGTTCGGTAACTTCAA-CCTCGGTGGAACGTTATCAGGGCGGT 31389 ||||||| | |||||| ||||||||||| ||| ||||| || || || | Sbjct 29 TGATGGTGTGTGGTATCTGCATGGTAACTTCAAACCTTGGTGGTACTGTAAGTGGAAGAC 88 Query 31390 TAAGCTCATCCGATCCAAACCTGCAAAACCTGCC-AGCGAAAGAGAATAAATACTCCAAG 31448 | || ||||| | || ||| | |||||| | || ||| | | | | ||| | ||| Sbjct 89 TGAGTTCATCAGGACCCAACTTACAAAACTTACCTAGC-AGCGGCACCATATATGCTAAG 147 Query 31449 CTGATCAAGTCTTGCTTCCAAGCTCCACCGGGTTGGATGTTCTGTGGGCTGGACTTTGCA 31508 | || ||| ||| || | || || |||||||| | ||| |||||| || Sbjct 148 CATATTAAGCGTTGTTTTAAGGCACCTAAAGGTTGGATATGGGCTGGCGCAGACTTTTCA 207 Query 31509 AGTCTGGAAGACAGGATCTCTGCCGTTACCACTAAAGACCCAAATAAACTGAAGGTGTAT 31568 | | ||||| || || || || | || ||| || |||||||| || |||||||| Sbjct 208 TCTTTAGAAGATAGAATTTCAGCTCTAACAACTCGTGATCCAAATAAGCTAAAGGTGTAC 267 Query 31569 ACCGATGGTTATGACGGTCACTGTCTTCGTGCTTATGCTTACTTCGGTGAGCAGATGCCA 31628 |||||||||||||| ||||||||||| || || ||| |||||||||| | ||||||| Sbjct 268 ACCGATGGTTATGATGGTCACTGTCTACGAGCCTATTCTTACTTCGGGCATATGATGCCA 327 Query 31629 GACATTGTGGATACTGTAGAGTCTATCA 31656 || ||| | ||||| | || || |||| Sbjct 328 GATATTATTGATACCATTGATTCAATCA 355 >seq400345 Length=893 Score = 113 bits (124), Expect = 2e-20 Identities = 207/301 (69%), Gaps = 12/301 (4%) Strand=Plus/Minus Query 61368 CACCTGCATACAGAACAGTACCAGCAGCAGCCAGCAGGTCTTTTTGCAGAACAGCTTCGG 61427 |||| |||| ||||| ||||||||| |||| || |||||| | || |||||| Sbjct 366 CACCACCATAACGAACAACACCAGCAGCGTTAAGCAAATCAATTTGCAAAGCATCTTCGG 307 Query 61428 TCATCTGTACAGCACCGTTCATCAGCTC--GGTAGA----CAGGTGATCCATCAGGCCAT 61481 | || | |||||| | |||| || ||| || || || | ||||| Sbjct 306 TGATTTCATTAGCACCCATGATCATTTCACGGTTGATGTGCATTTG-TAAATCAG----- 253 Query 61482 CGTCAGAGTCGAAGTCCATAGACTCTTGAGTGAACTCATGGAAGAAACCGAACTTGTGAA 61541 | |||| ||| ||||| | |||||||| || | |||| ||||||||| || || | | Sbjct 252 CATCAGTGTCAAAGTCTAACGACTCTTGGTTGTATTCATCGAAGAAACCAAATTTCTCTA 193 Query 61542 TTGAACCTTCACGTTCCAGACGGGTGAAACCAACACGGTTAACACGGCCACCATTTTCGG 61601 ||| ||||| |||| | ||| ||||||||| ||||||||||| ||||| ||||| Sbjct 192 ATGAGCCTTCCAGTTCAATACGACGGAAACCAACGCGGTTAACACGACCACCGTTTTCAC 133 Query 61602 TCAGCAGTGGCAGCTTGTTGGTGATAGTACCAATGTCTTTACTGGAGCCATACAGGTTCC 61661 | || | || ||||| | || ||||||| |||||| || || ||||| | ||| | Sbjct 132 TTAGTACAGGTAGCTTAGACGAAATCGTACCAACGTCTTTGCTTGAACCATATAAGTTAC 73 Query 61662 C 61662 | Sbjct 72 C 72 >seq523657 Length=447 Score = 109 bits (120), Expect = 3e-19 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61490 TCGAAGTCCATAGACTCTTGAGTGAACTCATGGAAGAAACCGAACTTGTGAATTGAACCT 61549 || ||||||| ||||||||||||| | |||| ||||||||||||||| | ||||||||| Sbjct 104 TCAAAGTCCAAAGACTCTTGAGTGTATTCATCGAAGAAACCGAACTTCTCCATTGAACCT 45 Query 61550 TCACGTTCCAGACGGGTGAAACCAACACGGTTAACACG 61587 ||| |||| | ||| ||||||| || ||||||||||| Sbjct 44 TCAAGTTCTAAACGCTTGAAACCGACTCGGTTAACACG 7 >seq500342 Length=215 Score = 105 bits (116), Expect = 3e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 65518 TTGAACAGCTTGTTTGAACCAAGGAAGGGTTCAGTCAGGGCTGAATAACGCCATTCTGCC 65577 ||| | | |||||| ||||||||||| || ||| ||| || || |||||||| || Sbjct 21 TTGCAGATCTTGTTGGAACCAAGGAAAGGCTCACTCAATGCAGAGTAACGCCACTCGTTG 80 Query 65578 TGACGACGAATCAGCTTAGGCTGAACACTGGATCGACCTTTCACCTTTTTAGGTTTGGCT 65637 | |||||||||||||||||| |||| || ||||| || |||||||||||||| Sbjct 81 TTACGACGAATCAGCTTAGGGGCAACAGACGAACGACCCTTAACCTTTTTAGGTTTCTGG 140 Query 65638 TTACCAGTCACATTCATCAAG-TCATTCCACTCATTGATCTTACCGATCTGA 65688 |||| || |||| | || || ||||||| | ||||||| |||||||| Sbjct 141 GAGCCAGAGAC-TTCAACGAGTTCTTTCCACTTGTCGATCTTAGCGATCTGA 191 >seq184512 Length=2755 Score = 105 bits (116), Expect = 3e-18 Identities = 203/293 (69%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 61484 TCAGAGTCGAAGTCCAT-AGACTCTTGAGTGAACTCATGGAAGAAACCGAACTTGTGAAT 61542 |||||||| |||| ||| ||| |||| || | ||| || | ||| ||||| | || Sbjct 824 TCAGAGTCAAAGTTCATTAGA-TCTTTAGACCATTCAGTAAACATACCAAACTTCTCAAA 882 Query 61543 TGAACCTTCACGTTCCAGACGGGTGAAACCAACACGGTTAACACGGCCACCATTTTCGGT 61602 | ||||||| || ||| |||||||||||||||||||||| |||||| |||| Sbjct 883 CGTACCTTCAATCTCTTTACGTTTGAAACCAACACGGTTAACACGACCACCAGTTTCACC 942 Query 61603 CAGCAGTGGCAGCTTGTTGGTGATAGTACCAATGTCTTTACTGGAGCCATACAGGTTCCC 61662 || | || || || | || ||||||||||||| | || || | ||| || Sbjct 943 AAGTAAAGGAAGTTTACCTGGAATCAAACCAATGTCTTTAGAGCTACCGTATAAGTTACC 1002 Query 61663 GTTAGCAATGGTCA-CACCAGAAGCATCGATGCCCTGATCGTTAATGTTACGGTCGTCCA 61721 ||| | | | ||| | || | ||||| || |||||||||||||||||| ||| || | Sbjct 1003 ATTAACTA-GTTCAGCGCCTGCTGCATCAATACCCTGATCGTTAATGTTAGCGTCATCTA 1061 Query 61722 GCAGTGGTACGTATTCGTACACTTTGATGGTTTTACCATAGTTCTTCGGCATG 61774 ||| |||| || | |||| || || | |||| ||||||| |||||| Sbjct 1062 GCA-AGGTAGATAATGGTACTGCTTAATTACTGTACCTGAGTTCTTAGGCATG 1113 Score = 102 bits (112), Expect = 4e-17 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 60723 CAAGACGTTCTGCACGCTTAACCAGAATACCGTAGTACCACTTGATGGAGCTGAAACCAG 60782 ||| ||| |||| ||| | ||| || ||||| |||| ||||| ||||| || || Sbjct 117 CAATACGCTCTGTACGTAGACCCATAAAGCCGTACCACCATTTGATAGAGCTAAAGCCCA 176 Query 60783 TCTCACCGTATGGATCGTTACGGTCAGCAGTTTCTTTACCCGGCATTTTGGTCATGATGG 60842 |||| || || ||||||||||||||||||||||| |||| ||| | || | | Sbjct 177 TCTCGCCATAAGGATCGTTACGGTCAGCAGTTTCAGTACCTGGCTTACGTGTAACAGTTT 236 Query 60843 TGAAGTTCACAGTCTTACCGTTGGTCTGGAAACCAATAGTAGAGAATGCGTCATCGCCAA 60902 || || || |||||||| || |||||||||||||||| |||| ||||| || | Sbjct 237 CAAACTTATTAGACTTACCGTCAGTTTGGAAACCAATAGTAGTAAATGATTCATCACCTA 296 Query 60903 CAACCAGCATTGG--ATACA 60920 ||| || | ||| ||||| Sbjct 297 CAATAAGAAGTGGGAATACA 316 >seq516110 Length=283 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 61568 AAACCAACACGGTTAACACGGCCACCATTTTCGGTCAGCAGTGGCAGCTTGTTGGTGATA 61627 || ||||||||||||||||| ||||| |||| | || |||| ||| | |||| Sbjct 255 AAGCCAACACGGTTAACACGACCACCTGTTTCTGATAGAGCAGGCATCTTAGCAGGGATA 196 Query 61628 GTACCAATGTCTTTACTGGAGCCATACAGGTTCCCGTTAGCAATGGTCA-CACCAGAAGC 61686 | |||||| || ||||| ||||| || ||||| ||||| | | ||| |||||| || Sbjct 195 GAACCAATATCCTTACTTGAGCCGTATAGGTTACCGTTTACGGT-TTCAGCACCAGTGGC 137 Query 61687 ATCGATGCCCTGATCGTTAATGTTACGGTCGTCCAGCAGTGGTACGTATTCGTACACTTT 61746 ||| | ||||||||||||||| || || |||| ||||||| || | ||| || Sbjct 136 ATCCAAGCCCTGATCGTTAATATTGGCATCATCCAATAGTGGTAGATAGTGGTATCGCTT 77 Query 61747 GATGGTTTTACCATAGTTCTTCGGCAT 61773 || ||||| |||| || ||||| Sbjct 76 AATACGAGTACCAGAGTTTTTAGGCAT 50 >seq501051 Length=457 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 36695 AAGTTAGCCAAGTACATTGCTGCTGTTGATGGCGATGTAACTCATGCTGACTTGAATGAG 36754 || ||||| ||||| |||||| | || ||| || || |||||| ||||||| |||| Sbjct 320 AAATTAGCTAAGTATATTGCTACAGTACGTGGGGAAGTCTCTCATGTTGACTTGGTTGAG 261 Query 36755 GCATTGCCGTTCTATAAGTCTGGTCAGGCAGCTCGTAATGAGATCATGACCATGGCTACG 36814 | || || ||||| || || | |||| |||| | | | | | |||| Sbjct 260 GACTTACCTTTCTACAAAGGCAGTGAATCAGCCAAACGTGAGTTACTTAACTTAGCTATT 201 Query 36815 GCGTGGGGCTATAAGAAGCACATCATCATTAAGAAGAAGTTCGATAGTGGTATCGAGTTT 36874 |||| ||||||||||| |||| ||||||||||| || || |||||| ||||| Sbjct 200 GCGTATGGCTATAAGAATAACATTATCATTAAGAAATTATTTAATGATGGTATTGAGTTC 141 Query 36875 TTCCAAGGTGAGACGCTAAAAGAAACTGATCTGGATAAGATCCGTGTCTCTTATAGCGA 36933 || | |||||||| || |||| ||||| | || || || | | ||| |||| || Sbjct 140 TTACGTGGTGAGACACTTCAAGAGTCTGATATAGAAAACATGTCTATGTCTCATAGTGA 82 >seq343004 Length=543 Score = 82.4 bits (90), Expect = 4e-11 Identities = 167/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 65361 CCAGCCCAGACGGACAATACCAGTACCCTCATCCACAACTGAACGAACATAGTTATCGAT 65420 |||||| | ||||||||| |||||| ||||| ||| | | ||| || || | ||| || Sbjct 141 CCAGCCAATGCGGACAATAATAGTACCTTCATCTACAGCAGTACGTACGTATTCATCTAT 200 Query 65421 GAAGTTGATCCGGTTCAGTTT-GGTTCGGAATTGCCAGTTTAAAACCAGTTCGTTCTGAC 65479 ||| || || ||| || ||| ||||| ||||| | | | | ||||||| Sbjct 201 GAAACCGA-CCTTATCAATTAAGGTATTAAATTGATGGTTTAGCATTAATCCATTCTGAC 259 Query 65480 GAGCTGCATCGGCATCTTCAAACGTAACCGGGCTGACATTGAACAGCTTGTTTGAACCAA 65539 ||||||| |||| || || || || || || |||| | || | || || || Sbjct 260 GAGCTGCTAGCTTATCTGCATGGGTCACTGGCCTAACTGTGAATATGTTCTCTGTACTAA 319 Query 65540 GGAAGGGTTCAGTCAGGGCTGAATAACGCCATTCTGCCTGACGACGAATCAGCTTAGGCT 65599 |||| ||| | ||| || | ||| |||||||||||||| |||||| |||||||| | Sbjct 320 AAAAGG-TTCTGACAGCGCAGCATAGCGCCATTCTGCCTGCTTACGAATAAGCTTAGGTT 378 Query 65600 GAAC 65603 | || Sbjct 379 GTAC 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240144865018238