Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023594.2 Length=54791 Score E Sequences producing significant alignments: (Bits) Value seq500878 136 1e-27 seq268385 131 6e-26 seq520575 129 2e-25 seq503300 123 9e-24 >seq500878 Length=594 Score = 136 bits (150), Expect = 1e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 16102 CTTAGATGCCGTACCAGATATCGATAGCGCGAGGATAAGTAACCTCTAAGCCACCGAAGC 16161 ||||||||||||||||||| ||||| ||||| || || ||||| || | ||| |||||| Sbjct 459 CTTAGATGCCGTACCAGATGTCGATTGCGCGCGGGTAGGTAACTTCCAGACCAGCGAAGC 518 Query 16162 GACCACGACCTGGAACTTCGTACACTAGGCCGTGAATCTGTACTGGCATGAATTGCAGTG 16221 ||||||| || ||||||| |||||| | |||||| | || ||||||| ||||||||| | Sbjct 519 GACCACGGCCCGGAACTTGGTACACCAAGCCGTGCAGTTGAACTGGCAGGAATTGCAGCG 578 Query 16222 GCAGAGTTTCGCG 16234 |||||| ||| || Sbjct 579 GCAGAGGTTCACG 591 >seq268385 Length=1441 Score = 131 bits (144), Expect = 6e-26 Identities = 191/268 (71%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 24678 AAGGTTACAGTAGCAGAGCCACCGCGACCCACTTGTGTAAACATCTTCACAGCAGTGTCG 24737 || || ||||||||||||||||| || | |||||||||||||| || ||||| |||| Sbjct 613 AATGTAACAGTAGCAGAGCCACCTCGGCTAACTTGTGTAAACATTTTAACAGCTTTGTCC 554 Query 24738 ATGTTCGCGTACAAAGGTTGCTTGCCTAAATGCTTGATAC--GGCCACCTTTGACATCTG 24795 | ||| ||| | ||| ||||| |||| ||| | ||| | || || || ||| | Sbjct 553 ACTGTCGAGTAGATAGGGTGCTTACCTAGATG--AGCTACTTGACCGCCCTTAACAGGAG 496 Query 24796 TGCCTTTCGCGCGTGTCGCAAGCTCAATACCAATACCAGCTTTCTTAGCAGTCATTTTGT 24855 ||| | | || || | || ||||||||| || || || |||||||| ||||| || | Sbjct 495 AGCCAATGGAACGGGTTGTAAACTCAATACCGATGCCCGCCTTCTTAGCTGTCATCTTAT 436 Query 24856 ATGCTAAATGAGAAGCTACACCAATCGAGTCGACGGTGTCGCCGCCTGTAATTACAGAGC 24915 |||| | ||| ||| || || || ||| |||| ||| ||||| |||| ||| | | Sbjct 435 ATGCGATATGCTCAGCAACGCCGATACTGTCTACGGAGTCACCGCCACTAATAACACAAC 376 Query 24916 AGCTGATAGAATCGAAGTCGCCGTTACG 24943 | || ||| ||||| || || ||||| Sbjct 375 AACTAATACTGTCGAAATCACCATTACG 348 >seq520575 Length=499 Score = 129 bits (142), Expect = 2e-25 Identities = 306/460 (67%), Gaps = 2/460 (0%) Strand=Plus/Minus Query 21239 TTGCCACGTAAGAGATAACCTACGAGGTCTTCGTCGTGCACCCGCTGCATGATAACCACG 21298 ||||| || | || || || || ||||| ||||| || ||||||||||| |||| | Sbjct 492 TTGCCGCGAAGAAGGTAGCCCACAAGGTCCTCGTCATGTACCCGCTGCATAATAATAGCT 433 Query 21299 ATTGGCGTGCGTGCGCAGGTAATTTGCTCACCATCAGGGCCAGTAACAACGCCGTCATTA 21358 | || || || || || | | | | ||| || | || |||| || ||| Sbjct 432 ACAGGTGTACGAGCACACTTTACACGGTTACCTTCTTCATCCTGCACCTCGCCATCGTTA 373 Query 21359 GCGAGTCGCGACATGAACGTGTTGTCGTAGCGGTCATTGATTTCTGTCCGTACTTGATTG 21418 || || |||||||| | ||||||||||| || || || || || || || || |||| Sbjct 372 GCAAGGCGCGACATCAGGGTGTTGTCGTAACGATCGTTAATCTCGGTACGAACAGCATTG 313 Query 21419 GAATACGCGTCTTTCGGTTTGATGACGTCGTCCACCACCAAGCA-GCCAGAGTAGACAAT 21477 || || || || || || ||||| | ||| || | ||| ||| | ||||||||| | | Sbjct 312 GAGTATGCATCCTTGGGCTTGATAATGTCATCGAGCAC-AAGTACGCCAGAGTACTTAGT 254 Query 21478 CGAGAGTGAACCAGCACCCTTCCCTGTCATCTTACCGCCCGTTGGCACAGCGTTCATTAC 21537 || | |||||||||||| ||||||| ||||||||| | || || |||| | || Sbjct 253 AGACAAGCTACCAGCACCCTTACCTGTCAACTTACCGCCAGACGGAACTGCGTGAAGCAC 194 Query 21538 ACCAGCACGTGTGGTACCCCAACGTTCCAGCGAGCGCTTGTTCGGGTCAATGCGTACAGC 21597 || | || ||||||||||| || || || || | |||||| |||| Sbjct 193 GCCGCCTTTAGTTGTACCCCAACGCTCAAGACTCCGTTTCGAGGAGTCAATCTTTACATG 134 Query 21598 AGGGAAGATCTTTTGGAACAGGCCTTCCAGCATAATCTGTCTGATATAACCTGATGATTC 21657 ||| || | | |||| | | |||||| || ||| || || || ||| Sbjct 133 AGGAAACACCCGACCAAACAACTCGTTAGTCATAATGGTTCGGATGTAGCCAGAGCTTTC 74 Query 21658 CGACACAACGTCATCCGCATACGACGTGATGATATTGTGG 21697 ||||||||||| ||||| || ||||||||||||||| Sbjct 73 ACCAACAACGTCATCAGCATAAGAGGTGATGATATTGTGG 34 >seq503300 Length=1332 Score = 123 bits (136), Expect = 9e-24 Identities = 213/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 19152 AGCATGTCAATGTAGTTGTTCAAG-TCAGATTCACCAGTAGCATTCATACCATCTGGAGA 19210 |||| ||||| |||||| |||| ||| |||||||| ||||||| ||| ||| || Sbjct 1028 AGCAAGTCAACGTAGTTAA-CAAGATCACTCTCACCAGTTGCATTCAACCCACTTGGGGA 1086 Query 19211 CGCCGACAGGAATCGTGTGGCGGGAATACCACAAGCCGCTGCTACAA-TACGAAGATATT 19269 || |||| ||| || || || || |||||| ||| || || | | | | ||| || | Sbjct 1087 TGCAGACAAGAAGCGAGTTGCAGGGATACCAACAGCAGCGGCGATTACTTCCAAG-TACT 1145 Query 19270 CCCAGATCAAATCCTTCACGCCGTTGAGCGCGATGGTCTTTGTGGTGTATTCTTCTGTGT 19329 ||||||||| ||||||||||| | | || |||| || ||||||||| || Sbjct 1146 CCCAGATCATGTCCTTCACGCCAGACAAGGAAATCTTCTTGCTGTCGTATTCTTCGTTGC 1205 Query 19330 CGTCGAGCACTAATACGTTATGGTTGGACTTTAGAGTCTTCATCATACGGAAGCGCTTCA 19389 || |||| | ||||| | | ||||||| | |||||||| |||||||||||||| Sbjct 1206 TATCCAGCAGGATAACGTTGTAGATGGACTTCATCTGCTTCATCAAACGGAAGCGCTTCA 1265 Query 19390 TCACAGCTTGCTCACCTGCAGGATGCGTAAGTAACTGTTGCAGGCCTTGCACGGTCACTA 19449 |||| || ||||| ||||| || || || | || ||||| | | ||| |||| Sbjct 1266 TCACCGCAGCTTCACCCGCAGGGGAAGTCAGCAAGTTCTGTAGGCCGTTGATGGTAACTA 1325 Query 19450 CGTC 19453 |||| Sbjct 1326 CGTC 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174116233181772