Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq79730 212 5e-49 seq439426 143 2e-28 seq340775 120 2e-21 seq300954 118 8e-21 seq413528 109 4e-18 seq280032 109 4e-18 seq509470 93.3 3e-13 seq137853 93.3 3e-13 seq525344 86.0 5e-11 >seq79730 Length=2051 Score = 212 bits (234), Expect = 5e-49 Identities = 938/1469 (64%), Gaps = 16/1469 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | || || ||||| || |||||||| | || || || || || | Sbjct 531 TTTGTCGACGGCGGATACGTTCAGAATGCCGTTGGCATCAATGTCGAAAGTTACCTCCAC 590 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || |||| ||||||| ||||| || | | | ||| | ||||| || Sbjct 591 CTGTGGTACACCTCGGGGAGCAGGAGGGATGCCGGCAAGCTCAAACTTGCCCAGGAGGTT 650 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || || ||||| | | || || || ||| || || Sbjct 651 GTTGTCCTTGGTCATGGCTCTCTCGCCCTCATACACCTGAATTAGCACACCAGGCTGGTT 710 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 ||| | || || | || | ||||| ||| || | || || || ||||| | | | Sbjct 711 ATCAGCGTAGGTGGAGAAGA-TCTGGGTTTGCTTGCTGGGGATAGTGGTGTTGCGTTTGA 769 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||| | |||||| | || || | ||| ||||| || |||| || || | Sbjct 770 TTAGCGGCGTCATGACTCCACCAACAGTCTCAATACCCAGAGACAGGGGAGCCACGTCCA 829 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | || || ||| | || | || || || || || | | Sbjct 830 GCAGCAGCAGATCTTGGACGTTCTCTGAAGTGTCTCCCATGAGGATGGCAGCCTGGACTG 889 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| || || |||||||| || || | | | | || |||| | | ||||| | Sbjct 890 CTGCACCATAAGCCACTGCTTCATCTGGGTTGATACTCTTGTTCAGTTCTCTGCCATTAA 949 Query 281835 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | |||| ||| ||||| || | | || ||||| | | || || ||||| | || Sbjct 950 AGAAATCTTGCAAGAACTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACG 1008 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 |||||||| | | || ||||||| || ||||| || |||| || || || || Sbjct 1009 ATTTCATGGATCATGGACTTATCCATCTTGGAATCTTTTAGGGCTTTCTCCACTGGCTCC 1068 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | || || | ||||| || || || || || || || || || Sbjct 1069 AGTGTTCCCCTGAAGAGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATGGAGG 1126 Query 282014 T-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 | || || || || || || |||| ||| || | |||||| | | || || || | Sbjct 1127 TGTAGAAGTCGATGCCCTCAAACAGAGAGTCGATTTCAATGCTGGCCTGGGTGCTTGAGG 1186 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 282131 | || | | || || | |||||| || || | ||||| | | ||| | || ||| Sbjct 1187 ACAGGGTCCTCTTCGCTCTTTCACAAGCGGTGCGCAGTCTCCTAACTGCTCT--CTTATT 1244 Query 282132 --GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 | | | ||| | || | ||||| || || || |||| | | || | || Sbjct 1245 TTGGCTGATGTCTTTCTTGTGCTTTCTTTTAAATTCCTCAAGGAAGTGACTGACCATCCG 1304 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 ||| ||||| || || || || | | || | ||||| || ||| |||| | || | Sbjct 1305 ATTGTCAAAGTCCTCTCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCAAAGAT 1364 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||| |||| | || | | || || ||| || ||||| | |||||| || || Sbjct 1365 GCCATCCTCAATGGTCAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCAAAGATGAG 1424 Query 282310 TACATTCATTTCTTTGTCTTGGTT-TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || || ||| |||| | |||||| | || || |||| || || || || | Sbjct 1425 CACGTTGCGCTCTCC-TCTTTTTCCTTTATCCAAGCCGTAGGCAATCGCTGCTGCTGTGG 1483 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | || || || || |||| |||||| ||||||| || ||| ||||| |||||||||| Sbjct 1484 GCTCGTTGATGATCCTCAGAACATTCAGACCAGAGATCACTCCAGCATCCTTAGTGGCTT 1543 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | || || ||||| || ||||| || || || || || || |||| || || | || || Sbjct 1544 GCCTCTGAGAATCATTGAAATAAGCTGGCACTGTGATGACTGCATTTGAGACCTTTTGTC 1603 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | || || ||| | | ||||||||| || | |||||| || |||| || | Sbjct 1604 CCAGGTAGGCCTCGGCTATCTCCTTCATTTTAACCAAGACCATTGACGAGATTTCCTCGG 1663 Query 282549 GAGAATATTGCTT-GGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607 | | | | |||| || |||| || ||| || | || | || || | || Sbjct 1664 G-GTAGAAGGCTTTGGTTTCACCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCA 1722 Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667 | || || || || |||||| |||||| || || || || | ||||||||| | | Sbjct 1723 TCGATCACCTTGAAAGGCCAAAGTTTCATGTCGGACTGGACGATGGAGTCATTAAACTTT 1782 Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATAT 282727 || || |||| ||| || || ||||| || |||||||| || || | || | || | Sbjct 1783 CTTCCGATTAGTCGCTTGGCGTCAAATATTGTATTGGTGGGGTTCATGGCGACCTGGTTC 1842 Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 ||||| ||||||||||| || ||||| || |||| | ||||| |||||||| Sbjct 1843 TTGGCAGCATCTCCAATGAGCCTCTCTGTGTCGCTAAAGGCCACATAGCTGGGAGTTGTC 1902 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 | || || || || || || || || || ||||| |||| ||| | || | || ||| Sbjct 1903 CTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGTTGGAAAACTGCCACGCAA 1962 Query 282848 CTAAAAGTTGTTCCTAAATCAATACCAAT 282876 | | || ||||| ||||| || ||||| Sbjct 1963 GAATAGGTGGTTCCCAAATCTATGCCAAT 1991 >seq439426 Length=530 Score = 143 bits (158), Expect = 2e-28 Identities = 127/159 (80%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 |||| || ||||| | ||| || |||| || |||||||||||||| || ||||| | | Sbjct 182 CTTGCTTCTTATCGATACCGTAAGCAAGTGCTGCAGCAGTTGGTTCGTTGATAATACGCT 241 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 ||||| |||||| ||||| | || |||||||| || ||||| | |||||||||||||| Sbjct 242 TAACATCAAGACCTGCAATACGACCAGCATCTTTCGTTGCTTGACGTTGTGAATCGTTAA 301 Query 282447 AATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTT 282485 | || |||||||| |||||||| || || || ||||||| Sbjct 302 AGTAAGCAGGAACGGTAATAACCGCTTCAGTCACTTCTT 340 >seq340775 Length=450 Score = 120 bits (132), Expect = 2e-21 Identities = 137/182 (75%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 282340 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 282399 || |||||| || | || || || |||||||| || ||||| | | ||||| |||||| Sbjct 44 AATACCATAAGCTAGTGCCGCTGCCGTTGGTTCGTTGATAATACGCTTAACATCAAGACC 103 Query 282400 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 282459 ||||| | || ||||||||||| ||||| | |||||||||||||| ||||| ||||| Sbjct 104 CGCAATACGACCAGCATCTTTAGTAGCTTGACGCTGTGAATCGTTAAAGTATGCCGGAAC 163 Query 282460 AGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATT 282517 ||||||||| || || || || ||| || || || ||| || |||| |||||| Sbjct 164 AGTAATAACTGCTTCAGTAACAGCTTCACC--TAAAAAGTCTTCAGCCGTTTTCTTCATT 221 Query 282518 TT 282519 || Sbjct 222 TT 223 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 ||| || || || || ||||| |||||||| || || || |||||| | |||||| Sbjct 47 ACCATAAGCTAGTGCCGCTGCCGTTGGTTCGTTGATAATACGCTTAACATCAAGACCCGC 106 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 ||| | ||| ||| ||| ||||| | ||||| || ||||| ||||| || ||||| Sbjct 107 AATACGACCAGCATCTTTAGTAGCTTGACGCTGTGAATCGTTAAAGTATGCCGGAACAGT 166 Query 86238 AATAACTGCTTTATTAATAGGTT 86260 ||||||||||| | ||| || || Sbjct 167 AATAACTGCTTCAGTAACAGCTT 189 >seq300954 Length=1016 Score = 118 bits (130), Expect = 8e-21 Identities = 148/202 (73%), Gaps = 11/202 (5%) Strand=Plus/Minus Query 282321 CTTTGTC---TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 ||||||| || ||||| || | || || |||| |||||||| |||||||| || | Sbjct 838 CTTTGTCGCCTTTTTTTTTTTCCATGCCGTAAGCAAGGGCAGCAGCCGTTGGTTCGTTGA 779 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 |||| || || | ||| || || | || |||||||| || ||||| | |||| Sbjct 778 TAAT-------ACGTTTA-ACCTGCGATACGACCAGCATCTTTCGTTGCTTGGCGCTGTG 727 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 |||||||||| || ||||| || ||||| || || ||||| ||||||| || | |||| Sbjct 726 AATCGTTAAAGTAAGCAGGTACGGTAATGACTGCTTCTGTCACTTCTTCACCTAGATAAT 667 Query 282498 CGCTTGCTGTTTGTTTCATTTT 282519 | |||||||| ||||||||| Sbjct 666 CTTCTGCTGTTTTTTTCATTTT 645 >seq413528 Length=500 Score = 109 bits (120), Expect = 4e-18 Identities = 113/147 (77%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| || ||||||||||| || || || || | || ||| Sbjct 89 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCGTTGATGATACGCAGCACA 148 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| ||| ||||||||||||||||| | || || || || ||||| Sbjct 149 TTGAGCCCAGCAATGACTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAATAA 208 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 |||||||| || || || |||| |||| Sbjct 209 GCAGGAACCGTGATGACTGCAT-TGTT 234 >seq280032 Length=493 Score = 109 bits (120), Expect = 4e-18 Identities = 113/147 (77%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| || ||||||||||| || || || || | || ||| Sbjct 410 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCGTTGATGATGCGCAGCACA 351 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| ||| ||||||||||||||||| | || || || || ||||| Sbjct 350 TTGAGCCCAGCAATGACTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAATAA 291 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 |||||||| || || || |||| |||| Sbjct 290 GCAGGAACCGTGATGACTGCAT-TGTT 265 >seq509470 Length=539 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 131153 TTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAAT 131212 ||||| || || || | |||| ||||| || || | || ||||||||||||||| || Sbjct 369 TTTATTAAAGATGAAGTGGAAATCGTAGTTGCGACCGTGGCTTTTGGTATGGGTATTGAT 428 Query 131213 AAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTATTAT 131272 ||||| |||| | |||| | ||||| | | || ||||||||||| || ||| Sbjct 429 AAACCCAATGTACGTTTTGTGGTGCATTATGAAATACCTAAGAATATTGAGTCATACTAT 488 Query 131273 CAAGAAATTGGTAGAGCAGGTCGTGATGG 131301 ||||||| ||| |||||||| || ||||| Sbjct 489 CAAGAAACTGGGAGAGCAGGACGAGATGG 517 >seq137853 Length=2661 Score = 93.3 bits (102), Expect = 3e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | ||| | |||| ||||||||||||||||||||| Sbjct 1244 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTTTTGGCTGCATCTCCAATCAGCC 1303 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 1304 TCTCTGTATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 1363 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | || ||||| || |||| || | ||||| ||||| | || ||||| | ||| | Sbjct 1364 TGATCTCAACCTTTCCATGCTGGAACACACCAACACAGGAGTAGGTGGTTCCAAGATCGA 1423 Query 282870 TACCAA 282875 |||||| Sbjct 1424 TACCAA 1429 >seq525344 Length=259 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 7/141 (5%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTAT---TTTAAGAACATCTAAACC 86174 |||||| |||||||| || || |||||||| || || || ||| | |||| | ||| Sbjct 172 ACCGTAGGCAAGAGCCGCAGCTGTTGGTTCGTTGATGATACGTTTTA---CATCAAGACC 116 Query 86175 CGCAATTTTAGCAGAAT-CAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 |||||||||| | | | | |||||||| | |||| |||||||||||| ||||||| Sbjct 115 CGCAATTTTACCCGCGTACTTTTGTTGCTTGACGTTGTGAGTCATTAAAATAAGCTGGTA 56 Query 86234 CAGTAATAACTGCTTTATTAA 86254 | || | ||| |||| | ||| Sbjct 55 CGGTTACAACCGCTTCAGTAA 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3714830472571452