Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_023688.1
Length=222006
Score E
Sequences producing significant alignments: (Bits) Value
seq475275 190 3e-43
seq450559 149 9e-31
seq449735 134 2e-26
seq250551 123 4e-23
seq516580 113 6e-20
seq509673 100 4e-16
seq316069 86.0 9e-12
>seq475275
Length=1050
Score = 190 bits (210), Expect = 3e-43
Identities = 265/371 (71%), Gaps = 3/371 (1%)
Strand=Plus/Plus
Query 28683 TTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTACTTGAGCGATGAT 28742
|||||| || || || || ||| |||| |||||||| ||||| || || ||||| || ||
Sbjct 1 TTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGACTCGCGACCTGAGCAATAAT 60
Query 28743 TTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGATTTGAGCATTACC 28802
||| || | || |||| ||| || ||||| || || | || |||| |||||||||
Sbjct 61 TTGCGCCGTAACAGCAGTAGCAGTTGAAATAGACTTAGGCGGTTCTATTTCAGCATTACC 120
Query 28803 CATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTAAACATTGG 28862
|||| | |||||| | | | ||| || | | ||| || |||||||| |||||||| ||
Sbjct 121 CATTTTAAAACCATGAGTTAGCATGCCGGCCAAATCAATTAACATGCAATTAAACATCGG 180
Query 28863 GAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTGTGCTTGCAT 28922
||| || |||| |||||| | ||||| ||||||| || ||||| || || |
Sbjct 181 GAAAAAAGGTGCATAATCTAAGTCGTGATAGTGAATTTCGCCTTTTTCATGGGCGGCTAC 240
Query 28923 AACTTCAACAGGCAGATAATG---CTTGGCGAAATGCTTACTAACGATACCAGCTACCAA 28979
|| || ||||| |||| ||||| |||||||| || ||||| |||| ||
Sbjct 241 CACATCTTTTGGCAGTAAATGGGTTTTGGCATAATGCTTAGCCACAATACCCGCTAATAA 300
Query 28980 ATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATTCATGATTGATTC 29039
||| || || || ||||| || ||||| ||||| || ||||||||||| | || |
Sbjct 301 ATCACGCTGGGTCGGAATGACTTTGGCATCTTTATTGGCATTTTCATTTAAAATCGCACT 360
Query 29040 ATCAGATTGCT 29050
||| |||||||
Sbjct 361 ATCCGATTGCT 371
>seq450559
Length=633
Score = 149 bits (164), Expect = 9e-31
Identities = 415/633 (66%), Gaps = 3/633 (0%)
Strand=Plus/Minus
Query 28249 GTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGCAT 28308
|| |||| || | || |||||| | ||||| || || ||||| || | | | |||
Sbjct 633 GTGACTTTCACTACCTGATCATAATTAAGAATATCTGGGTACATGCGCATGGTTGAGCAC 574
Query 28309 TCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAGTTGTGTCCGTCT 28368
| |||| || ||| ||| ||| | |||||||| || || || |||
Sbjct 573 GTTAAGGCCATCTTTTTAATATCATAATTAGCATCAGTCGCTTTATGATTCACGCCATCT 514
Query 28369 TTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCC 28428
|| | || || |||| ||| || || || | || | | | |||||| | ||| |||
Sbjct 513 TTAATGGCAAACACCAATTTTGGAAAGACTGCTGTTTTGCGATTTTTACCTAAACCCGCC 454
Query 28429 AAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCA 28488
| ||| ||| | | || | || ||||| | |||||||| || | ||||
Sbjct 453 ATACGTACTGTTAACATCGATTGCTGAATTAAACGCGACTCCCACGACACGCCTAAACCA 394
Query 28489 AAGCCGAAGGTACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATAC 28548
|| || |||||| ||||| ||||| ||||| |||| |||| || || || |||||
Sbjct 393 AAACCAAAGGTAACAAACGGTGTTTGGCCATTAGCGGTATGCAAGGTATTCACTTCATAT 334
Query 28549 TCCAGACCTTGCATAGCATCAT-ATACAGCTTTGCGAGTCTTTGCAATAGCATATTGCTG 28607
|| || || | || |||| | || ||| || || | | || ||||| |
Sbjct 333 TCAAGTGACTGGAATGCGTCATGACACTCTTTTTCG-GTTTGCGTCATGGCATAACCTTC 275
Query 28608 TTGATCTGGAATTTTCCAGTAACGAGCTTCATCCAAGTGCTTTTCGTGTGTCATTTTAAC 28667
| |||| | || ||| | ||| | | |||||||| || | |||| ||
Sbjct 274 TACGTCTGCCACTTGCCATTTTTTAGCGACGCTAAGGTGCTTTTGGTAACTGATTTGCAC 215
Query 28668 ATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGC 28727
| || || | ||||||||| || || || || ||| |||| |||||||| || || ||
Sbjct 214 AAACTCAGCTAACACTTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGGCTCGC 155
Query 28728 TACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTC 28787
||| ||||| || ||||| || | || |||| || || || || || || | ||
Sbjct 154 TACCTGAGCAATAATTTGCGCCGTAACAGCAGTGGCAGTTGATATAGACTTAGGCGGTTC 95
Query 28788 GATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACAT 28847
|||| ||||||||||||| | |||||| | | ||||| || | | ||| || | |||
Sbjct 94 TATTTCAGCATTACCCATTTTAAAACCATGAGTTAACATGCCGGCCAAATCAATTAGCAT 35
Query 28848 GCAGTTAAACATTGGGAAGAACGGTGAATAATC 28880
|||||||||||| ||||| || |||| ||||||
Sbjct 34 GCAGTTAAACATCGGGAA-AAAGGTGCATAATC 3
>seq449735
Length=3187
Score = 134 bits (148), Expect = 2e-26
Identities = 420/638 (66%), Gaps = 33/638 (5%)
Strand=Plus/Minus
Query 32593 TAAATTCGACCTGTGCCAGTACGCTCTTGCGCAAACAGGTTGAAGATCTCAGATGCTTTG 32652
||||| ||||| || | | ||| ||||||||||||| ||| | ||| |||||
Sbjct 653 TAAATACGACCGGTACTTGCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTA 594
Query 32653 ATACGCTTTTTGCGAACAAACGGTTCTTCTTCCAGCATTT--CGTACAACTCTTTGAACT 32710
|| || ||||| |||| | |||| ||| | |||| | || | | | | ||||
Sbjct 593 ATGCGTTTTTTACGAATTGATTCGTCTTGTTC--GTATTTTACATAAAGCGCGTCAAACT 536
Query 32711 TAACGGGATCTTTATAGAACAGATCGTAAAGCTCGCCATTTTGAACATCAG---GACTAA 32767
| | |||| | | || ||||||||| ||| | | ||||||| | ||||
Sbjct 535 CGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCC---TGGCACATCAGAGGGGCTAA 482
Query 32768 ACAGCGTGATATAATCATCGTTTTTCAGACGTTCCCAGAACATT---TTATTGATTTGGA 32824
||| || || || || || || | | ||| | || ||||| ||||| | || |
Sbjct 481 ACAAGGTAATGTAGTCGTCTTTAATTAAACG---CGAGTACATTAGTTTATTAAACTGTA 425
Query 32825 TACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAA 32884
||||| || || || | | || || || || || || ||| || || || || |
Sbjct 424 CGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTA 365
Query 32885 GGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCACGTA 32944
| ||||| ||||| | |||||| | ||| || ||| || || ||||| |||||||
Sbjct 364 ACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTA 305
Query 32945 CACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATAC 33004
||||||| || || |||||||| ||||| || ||||||| || | || || ||| ||
Sbjct 304 CACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAAC 245
Query 33005 CAGTATG--ACGAACCTCGCCAGAACGAAT---TCTAGAGCCTTCAGCACGAATAGCACC 33059
| ||||| ||| | |||||| ||||| ||| || |||||||| |||
Sbjct 244 CCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTA---CCCAGTGCACGAATGCGACC 190
Query 33060 ACCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAGCGGTT 33117
| || || || || || || | |||| |||| || | ||| || | | | |||
Sbjct 189 TGCGTTAATGCCAATGCCGGCAC-GTTGC-GATACGTATTTAACAATTGCAGACGAGGTG 132
Query 33118 GCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGG 33177
|||||||| ||| || || |||| || || || || ||||||||||| ||
Sbjct 131 GCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGT 72
Query 33178 GTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215
|| || ||||||||||| |||| ||| || || || ||
Sbjct 71 GTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAG 34
>seq250551
Length=853
Score = 123 bits (136), Expect = 4e-23
Identities = 252/369 (68%), Gaps = 13/369 (4%)
Strand=Plus/Minus
Query 27295 TTAAATGCGCGAGAACCGGGGTTCCCCAAATAACCGCAGA-CGCGACGAATAACGTTCAT 27353
||||||| || | | | ||| | || ||||||||||| | |||||||| |||| ||
Sbjct 766 TTAAATGGTCGCGCATCTGGGCTGCCTAAATAACCGCACAACGCGACGAGTAACAGACAC 707
Query 27354 TTTGGTATCATCATGATTGCCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAA 27413
| | | |||||||| || || ||||| || || | || ||| ||| | | ||
Sbjct 706 TCGGCTTGGCTCATGATTACCACATTTAGGGCACACAAACCCCTTACTGGTACAATTAAA 647
Query 27414 TTCGCCGTGATAACCGCATTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGG 27473
|| || | ||||||| || |||| |||||| || |||||||| || ||||| ||
Sbjct 646 CTCACCAATAAAACCGCAATCGTAACACTCATCAATGGGAGTATTGGTGCCGTAATATGG 587
Query 27474 GGTATTC--CTATAAGCATAATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATA 27531
| || |||||| ||||||||||| | |||||| |||| | ||| | | |||
Sbjct 586 C--ACTCGGCTATAACTGTAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATG 529
Query 27532 TTCGGATATTCACCGTATGAAATAAAACCACCAGAACTAAGCG--GAATGAAT--TGCTT 27587
|| |||||||| ||||| ||||||| || ||| | ||| | || || | |
Sbjct 528 TTGGGATATTCGCCGTAACAAATAAACCCGCCA----TTGGCGATGGCTGGATAAGGTTG 473
Query 27588 TTCAAAATCGATCTTGTCATACGGATTTGTATTATGACGAACGTCCAGATGGAAACTGTT 27647
||||||||| ||||| ||| | |||||| || | ||| || | ||||| || ||
Sbjct 472 TTCAAAATCAATCTTATCAAAAGGATTTACTTTCTTTTCAACATCTAAGTGGAAGCTATT 413
Query 27648 GGTATAATA 27656
||| |||||
Sbjct 412 GGTGTAATA 404
>seq516580
Length=413
Score = 113 bits (124), Expect = 6e-20
Identities = 222/324 (69%), Gaps = 11/324 (3%)
Strand=Plus/Plus
Query 28129 CGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAACACCG 28188
|| || ||||| | | || ||||||||||| ||||| || |||| ||| ||||
Sbjct 93 CGAGGTAAGTTGATTGATACAACACCCAAGTTATTACGTCCATCATATACTGGTTCACCT 152
Query 28189 TTTTC---GTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAACTA 28245
|| | |||| ||| || | ||| ||| || ||||||||| | ||||| | |
Sbjct 153 GTTACTGGGTCTGACCATTCGTGTAGGAATGAACGACAGCCCATTGGGTACTTGAACCCA 212
Query 28246 CCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCG 28305
||||| |||||| | ||| || ||| ||| ||| || ||||||||||| || | |||
Sbjct 213 CCAGTAGTTTCAACTAACTTGTCGTAGTTCAAAATATCTGGATACATACGCTTGGTAGCA 272
Query 28306 CATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAGTTGT----G 28361
||||| | || ||||||||||| || |||||| || | ||| ||
Sbjct 273 CATTCAACTGCTAACTGTTTGATGTCGTAGTTAGGATCA-TCAACT--GAGTGGTTAACA 329
Query 28362 TCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAG 28421
||| | |||| | | ||||| | ||| || || || | ||| |||| |||||||| |
Sbjct 330 CCCGAC-TTCACACCAAATACTAATTTTGGAAACACTGCGGTATTACCGTCTTTACCGAT 388
Query 28422 ACCAGCCAAACGAACTTTCAGGAT 28445
|||||| | ||| ||||||| |||
Sbjct 389 ACCAGCTATACGCACTTTCAAGAT 412
>seq509673
Length=441
Score = 100 bits (110), Expect = 4e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 32810 TTTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGT 32869
||||||| | || | ||||| |||| || | || || || |||||||| || ||
Sbjct 217 TTTTATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGT 276
Query 32870 TGTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAG 32929
| || || || || | | | |||||||| | |||||| | || ||| ||| || |
Sbjct 277 TATTTTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCG 336
Query 32930 CAGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCC 32989
| || || ||||| || ||||| |||||||||| ||| || ||||| || || |||
Sbjct 337 CTGCACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTAT 396
Query 32990 AGAATGGGATAATACCAGTATGACGAACCTCGCCAGAACGAAT 33032
||||||||||| ||| ||||| | | ||||| ||||||
Sbjct 397 AGAATGGGATACAACCCGTATGCTGCGCTTCGCCGCCACGAAT 439
>seq316069
Length=313
Score = 86.0 bits (94), Expect = 9e-12
Identities = 65/76 (86%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 97396 AAACTGGTAGCCATGGGCAGGATTGAACTGCCGACCCCACCCTTATCAGGGGTGTGCTCT 97455
||| |||||| ||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 233 AAATTGGTAGGTCTGGGCAGACTTGAACTGCCGACCTCACCCTTATCAGGGGTGCGCTCT 292
Query 97456 A--CCACTGAGCTACA 97469
| | |||||||||||
Sbjct 293 AACCAACTGAGCTACA 308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 705625456922720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |