Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq475275 190 3e-43 seq450559 149 9e-31 seq449735 134 2e-26 seq250551 123 4e-23 seq516580 113 6e-20 seq509673 100 4e-16 seq316069 86.0 9e-12 >seq475275 Length=1050 Score = 190 bits (210), Expect = 3e-43 Identities = 265/371 (71%), Gaps = 3/371 (1%) Strand=Plus/Plus Query 28683 TTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGCTACTTGAGCGATGAT 28742 |||||| || || || || ||| |||| |||||||| ||||| || || ||||| || || Sbjct 1 TTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGACTCGCGACCTGAGCAATAAT 60 Query 28743 TTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTCGATTTGAGCATTACC 28802 ||| || | || |||| ||| || ||||| || || | || |||| ||||||||| Sbjct 61 TTGCGCCGTAACAGCAGTAGCAGTTGAAATAGACTTAGGCGGTTCTATTTCAGCATTACC 120 Query 28803 CATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACATGCAGTTAAACATTGG 28862 |||| | |||||| | | | ||| || | | ||| || |||||||| |||||||| || Sbjct 121 CATTTTAAAACCATGAGTTAGCATGCCGGCCAAATCAATTAACATGCAATTAAACATCGG 180 Query 28863 GAAGAACGGTGAATAATCAAGATCGTGGAAGTGAATCCAACCATTTTCGTGTGCTTGCAT 28922 ||| || |||| |||||| | ||||| ||||||| || ||||| || || | Sbjct 181 GAAAAAAGGTGCATAATCTAAGTCGTGATAGTGAATTTCGCCTTTTTCATGGGCGGCTAC 240 Query 28923 AACTTCAACAGGCAGATAATG---CTTGGCGAAATGCTTACTAACGATACCAGCTACCAA 28979 || || ||||| |||| ||||| |||||||| || ||||| |||| || Sbjct 241 CACATCTTTTGGCAGTAAATGGGTTTTGGCATAATGCTTAGCCACAATACCCGCTAATAA 300 Query 28980 ATCGCGTTGAGTTGGAATTACCTTGGCGTCTTTGTTTGCATTTTCATTCATGATTGATTC 29039 ||| || || || ||||| || ||||| ||||| || ||||||||||| | || | Sbjct 301 ATCACGCTGGGTCGGAATGACTTTGGCATCTTTATTGGCATTTTCATTTAAAATCGCACT 360 Query 29040 ATCAGATTGCT 29050 ||| ||||||| Sbjct 361 ATCCGATTGCT 371 >seq450559 Length=633 Score = 149 bits (164), Expect = 9e-31 Identities = 415/633 (66%), Gaps = 3/633 (0%) Strand=Plus/Minus Query 28249 GTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCGCAT 28308 || |||| || | || |||||| | ||||| || || ||||| || | | | ||| Sbjct 633 GTGACTTTCACTACCTGATCATAATTAAGAATATCTGGGTACATGCGCATGGTTGAGCAC 574 Query 28309 TCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAGTTGTGTCCGTCT 28368 | |||| || ||| ||| ||| | |||||||| || || || ||| Sbjct 573 GTTAAGGCCATCTTTTTAATATCATAATTAGCATCAGTCGCTTTATGATTCACGCCATCT 514 Query 28369 TTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAGACCAGCC 28428 || | || || |||| ||| || || || | || | | | |||||| | ||| ||| Sbjct 513 TTAATGGCAAACACCAATTTTGGAAAGACTGCTGTTTTGCGATTTTTACCTAAACCCGCC 454 Query 28429 AAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTACCAAGACCA 28488 | ||| ||| | | || | || ||||| | |||||||| || | |||| Sbjct 453 ATACGTACTGTTAACATCGATTGCTGAATTAAACGCGACTCCCACGACACGCCTAAACCA 394 Query 28489 AAGCCGAAGGTACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGACCTCATAC 28548 || || |||||| ||||| ||||| ||||| |||| |||| || || || ||||| Sbjct 393 AAACCAAAGGTAACAAACGGTGTTTGGCCATTAGCGGTATGCAAGGTATTCACTTCATAT 334 Query 28549 TCCAGACCTTGCATAGCATCAT-ATACAGCTTTGCGAGTCTTTGCAATAGCATATTGCTG 28607 || || || | || |||| | || ||| || || | | || ||||| | Sbjct 333 TCAAGTGACTGGAATGCGTCATGACACTCTTTTTCG-GTTTGCGTCATGGCATAACCTTC 275 Query 28608 TTGATCTGGAATTTTCCAGTAACGAGCTTCATCCAAGTGCTTTTCGTGTGTCATTTTAAC 28667 | |||| | || ||| | ||| | | |||||||| || | |||| || Sbjct 274 TACGTCTGCCACTTGCCATTTTTTAGCGACGCTAAGGTGCTTTTGGTAACTGATTTGCAC 215 Query 28668 ATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTACCGCCATAAATGTGACTTGC 28727 | || || | ||||||||| || || || || ||| |||| |||||||| || || || Sbjct 214 AAACTCAGCTAACACTTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGGCTCGC 155 Query 28728 TACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTAGAAATGCTTTTCGGAGTCTC 28787 ||| ||||| || ||||| || | || |||| || || || || || || | || Sbjct 154 TACCTGAGCAATAATTTGCGCCGTAACAGCAGTGGCAGTTGATATAGACTTAGGCGGTTC 95 Query 28788 GATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATTCCTTCAACATCTATCAACAT 28847 |||| ||||||||||||| | |||||| | | ||||| || | | ||| || | ||| Sbjct 94 TATTTCAGCATTACCCATTTTAAAACCATGAGTTAACATGCCGGCCAAATCAATTAGCAT 35 Query 28848 GCAGTTAAACATTGGGAAGAACGGTGAATAATC 28880 |||||||||||| ||||| || |||| |||||| Sbjct 34 GCAGTTAAACATCGGGAA-AAAGGTGCATAATC 3 >seq449735 Length=3187 Score = 134 bits (148), Expect = 2e-26 Identities = 420/638 (66%), Gaps = 33/638 (5%) Strand=Plus/Minus Query 32593 TAAATTCGACCTGTGCCAGTACGCTCTTGCGCAAACAGGTTGAAGATCTCAGATGCTTTG 32652 ||||| ||||| || | | ||| ||||||||||||| ||| | ||| ||||| Sbjct 653 TAAATACGACCGGTACTTGCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTA 594 Query 32653 ATACGCTTTTTGCGAACAAACGGTTCTTCTTCCAGCATTT--CGTACAACTCTTTGAACT 32710 || || ||||| |||| | |||| ||| | |||| | || | | | | |||| Sbjct 593 ATGCGTTTTTTACGAATTGATTCGTCTTGTTC--GTATTTTACATAAAGCGCGTCAAACT 536 Query 32711 TAACGGGATCTTTATAGAACAGATCGTAAAGCTCGCCATTTTGAACATCAG---GACTAA 32767 | | |||| | | || ||||||||| ||| | | ||||||| | |||| Sbjct 535 CGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCC---TGGCACATCAGAGGGGCTAA 482 Query 32768 ACAGCGTGATATAATCATCGTTTTTCAGACGTTCCCAGAACATT---TTATTGATTTGGA 32824 ||| || || || || || || | | ||| | || ||||| ||||| | || | Sbjct 481 ACAAGGTAATGTAGTCGTCTTTAATTAAACG---CGAGTACATTAGTTTATTAAACTGTA 425 Query 32825 TACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTTGTTCTTGAGCACAA 32884 ||||| || || || | | || || || || || || ||| || || || || | Sbjct 424 CGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTA 365 Query 32885 GGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGCAGCGCCACCACGTA 32944 | ||||| ||||| | |||||| | ||| || ||| || || ||||| ||||||| Sbjct 364 ACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTA 305 Query 32945 CACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCAGAATGGGATAATAC 33004 ||||||| || || |||||||| ||||| || ||||||| || | || || ||| || Sbjct 304 CACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAAC 245 Query 33005 CAGTATG--ACGAACCTCGCCAGAACGAAT---TCTAGAGCCTTCAGCACGAATAGCACC 33059 | ||||| ||| | |||||| ||||| ||| || |||||||| ||| Sbjct 244 CCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTA---CCCAGTGCACGAATGCGACC 190 Query 33060 ACCATTGATACCGATACCAGCTCTCTTGCTGATA--TAGTCAACGATAGAACTAGCGGTT 33117 | || || || || || || | |||| |||| || | ||| || | | | ||| Sbjct 189 TGCGTTAATGCCAATGCCGGCAC-GTTGC-GATACGTATTTAACAATTGCAGACGAGGTG 132 Query 33118 GCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAACTGACGG 33177 |||||||| ||| || || |||| || || || || ||||||||||| || Sbjct 131 GCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGT 72 Query 33178 GTCGGAGTACGAACACCAGCCAGAATAGGAGTCGGAAG 33215 || || ||||||||||| |||| ||| || || || || Sbjct 71 GTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAG 34 >seq250551 Length=853 Score = 123 bits (136), Expect = 4e-23 Identities = 252/369 (68%), Gaps = 13/369 (4%) Strand=Plus/Minus Query 27295 TTAAATGCGCGAGAACCGGGGTTCCCCAAATAACCGCAGA-CGCGACGAATAACGTTCAT 27353 ||||||| || | | | ||| | || ||||||||||| | |||||||| |||| || Sbjct 766 TTAAATGGTCGCGCATCTGGGCTGCCTAAATAACCGCACAACGCGACGAGTAACAGACAC 707 Query 27354 TTTGGTATCATCATGATTGCCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGTGAA 27413 | | | |||||||| || || ||||| || || | || ||| ||| | | || Sbjct 706 TCGGCTTGGCTCATGATTACCACATTTAGGGCACACAAACCCCTTACTGGTACAATTAAA 647 Query 27414 TTCGCCGTGATAACCGCATTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGG 27473 || || | ||||||| || |||| |||||| || |||||||| || ||||| || Sbjct 646 CTCACCAATAAAACCGCAATCGTAACACTCATCAATGGGAGTATTGGTGCCGTAATATGG 587 Query 27474 GGTATTC--CTATAAGCATAATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATA 27531 | || |||||| ||||||||||| | |||||| |||| | ||| | | ||| Sbjct 586 C--ACTCGGCTATAACTGTAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATG 529 Query 27532 TTCGGATATTCACCGTATGAAATAAAACCACCAGAACTAAGCG--GAATGAAT--TGCTT 27587 || |||||||| ||||| ||||||| || ||| | ||| | || || | | Sbjct 528 TTGGGATATTCGCCGTAACAAATAAACCCGCCA----TTGGCGATGGCTGGATAAGGTTG 473 Query 27588 TTCAAAATCGATCTTGTCATACGGATTTGTATTATGACGAACGTCCAGATGGAAACTGTT 27647 ||||||||| ||||| ||| | |||||| || | ||| || | ||||| || || Sbjct 472 TTCAAAATCAATCTTATCAAAAGGATTTACTTTCTTTTCAACATCTAAGTGGAAGCTATT 413 Query 27648 GGTATAATA 27656 ||| ||||| Sbjct 412 GGTGTAATA 404 >seq516580 Length=413 Score = 113 bits (124), Expect = 6e-20 Identities = 222/324 (69%), Gaps = 11/324 (3%) Strand=Plus/Plus Query 28129 CGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAACTTCAACACCG 28188 || || ||||| | | || ||||||||||| ||||| || |||| ||| |||| Sbjct 93 CGAGGTAAGTTGATTGATACAACACCCAAGTTATTACGTCCATCATATACTGGTTCACCT 152 Query 28189 TTTTC---GTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAACTA 28245 || | |||| ||| || | ||| ||| || ||||||||| | ||||| | | Sbjct 153 GTTACTGGGTCTGACCATTCGTGTAGGAATGAACGACAGCCCATTGGGTACTTGAACCCA 212 Query 28246 CCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCAGCG 28305 ||||| |||||| | ||| || ||| ||| ||| || ||||||||||| || | ||| Sbjct 213 CCAGTAGTTTCAACTAACTTGTCGTAGTTCAAAATATCTGGATACATACGCTTGGTAGCA 272 Query 28306 CATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAGTTGT----G 28361 ||||| | || ||||||||||| || |||||| || | ||| || Sbjct 273 CATTCAACTGCTAACTGTTTGATGTCGTAGTTAGGATCA-TCAACT--GAGTGGTTAACA 329 Query 28362 TCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAG 28421 ||| | |||| | | ||||| | ||| || || || | ||| |||| |||||||| | Sbjct 330 CCCGAC-TTCACACCAAATACTAATTTTGGAAACACTGCGGTATTACCGTCTTTACCGAT 388 Query 28422 ACCAGCCAAACGAACTTTCAGGAT 28445 |||||| | ||| ||||||| ||| Sbjct 389 ACCAGCTATACGCACTTTCAAGAT 412 >seq509673 Length=441 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 32810 TTTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGT 32869 ||||||| | || | ||||| |||| || | || || || |||||||| || || Sbjct 217 TTTTATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGT 276 Query 32870 TGTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAG 32929 | || || || || | | | |||||||| | |||||| | || ||| ||| || | Sbjct 277 TATTTTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCG 336 Query 32930 CAGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCC 32989 | || || ||||| || ||||| |||||||||| ||| || ||||| || || ||| Sbjct 337 CTGCACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTAT 396 Query 32990 AGAATGGGATAATACCAGTATGACGAACCTCGCCAGAACGAAT 33032 ||||||||||| ||| ||||| | | ||||| |||||| Sbjct 397 AGAATGGGATACAACCCGTATGCTGCGCTTCGCCGCCACGAAT 439 >seq316069 Length=313 Score = 86.0 bits (94), Expect = 9e-12 Identities = 65/76 (86%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 97396 AAACTGGTAGCCATGGGCAGGATTGAACTGCCGACCCCACCCTTATCAGGGGTGTGCTCT 97455 ||| |||||| ||||||| |||||||||||||| ||||||||||||||||| ||||| Sbjct 233 AAATTGGTAGGTCTGGGCAGACTTGAACTGCCGACCTCACCCTTATCAGGGGTGCGCTCT 292 Query 97456 A--CCACTGAGCTACA 97469 | | ||||||||||| Sbjct 293 AACCAACTGAGCTACA 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705625456922720