Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq508942 107 2e-18 seq513984 105 6e-18 seq309203 96.9 3e-15 seq521708 89.7 5e-13 seq518701 84.2 2e-11 >seq508942 Length=328 Score = 107 bits (118), Expect = 2e-18 Identities = 197/285 (69%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 26507 TCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTATCCTGTATTGCATACTGTAGG 26566 ||||| | ||||||||||| || ||||| | || || ||||||| || || Sbjct 8 TCACCTAAAATAAACGCTTGAGCCAAACCATCAGGACTTGGTTGTATTGTGTAACTAAGC 67 Query 26567 GAAATACCAAAAGAAGAACCATCACCTAGAAGATTTACAAAATTAAT-TTGATCTTCTGG 26625 || |||||| || |||||||||| | || |||| | | ||||||||| || Sbjct 68 TCAACACCAAAGCGTGAGCCATCACCTAACA-ATCGTTTAAATGATTCTTGATCTTCAGG 126 Query 26626 TGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATA 26685 ||| ||||| |||| ||||| | ||||| | | ||| | ||||| || || ||||| Sbjct 127 TGTAGTAATAATTAAGATTTCACGTATTCCCGCTAACATCAACACAGAAAGCGGGTAATA 186 Query 26686 AATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTA 26745 |||||| || ||||| |||||||| | || || || || || |||||| || || Sbjct 187 AATCATTGGCTTATCATAAATTGGGAGTAACTGCTTGGATACACCCATAGTAATAGGATA 246 Query 26746 AAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTTCATACT 26790 ||| | ||| || | | || || | |||||| |||||||| || Sbjct 247 AAGGCGTGTACC-GGAGCTCCGGCAAGGATAATTCCTTTCATGCT 290 >seq513984 Length=888 Score = 105 bits (116), Expect = 6e-18 Identities = 213/315 (68%), Gaps = 1/315 (0%) Strand=Plus/Plus Query 27058 CCAATATTATATGTCTCTCCAGATTTGCCTTTAGTTACTACTAGGTGTAATGCCTCTGCG 27117 || |||||||| || || || ||| ||| | || |||||| | | ||| || Sbjct 328 CCGATATTATAAGTTTCACCGATTTTACCTGTCGTCACTACTTTATAGAGTGCACGAGCA 387 Query 27118 TGATCGTCAACGTATAACCAGTCTCTTACTTGAAGACCATTACCATAAACAGGGATTGGT 27177 ||||| ||||| || | ||| || | | |||| ||| |||||||||| ||| | || | Sbjct 388 TGATCTTCAACATAGAGCCAATCACGAATTTGATCACCTTTACCATAAATAGGCAATGAT 447 Query 27178 TTATGCATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTT-TCTGGATGATGATATGC 27236 ||| ||| ||| || | || |||| || || ||| ||| || | Sbjct 448 TTACCTTCTAACGCATTCAGAATAACTAATGGGATTAAACTTCTCAGGAAAATGGTACGG 507 Query 27237 TCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCACGC 27296 ||| | |||||||| || || || |||| || || | ||| || || || |||||| Sbjct 508 ACCATAGTTATTTGAGCAGTTAGTGATAATGGTTGGTAAACCGTATGTGCGTAACCACGC 567 Query 27297 TCTTACCAAATGATCGCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGTTTATAAGG 27356 ||| ||||||||||| |||| ||||||||||| | ||| || |||||||| ||||| Sbjct 568 TCTGACCAAATGATCACTTGATGCTTTAGATGCCGAATAAGGGCTACTTGGCGCATAAGC 627 Query 27357 ATTCTGTTCTGTAAA 27371 | | ||| ||||| Sbjct 628 AGTGCCTTCCGTAAA 642 >seq309203 Length=1072 Score = 96.9 bits (106), Expect = 3e-15 Identities = 299/456 (66%), Gaps = 9/456 (2%) Strand=Plus/Plus Query 75067 TAACTGGATTATTAACGGTAAAGAACCACGTCTTGCACACTATCCTCTTACAGATGATGG 75126 |||||||||||| || ||||| || || || ||| ||||||| || | | || | Sbjct 305 TAACTGGATTATAAATGGTAAGGAGCCTGTACTGGCAAACTATCCACTCA-ACCCCATTG 363 Query 75127 CTACCCTACACACGGAGGTTTTAAGGGTAGCTTAATGACGTGGACTAACGGTAGAACAGT 75186 ||||||| || || ||||| ||||||| | | | ||||||||||| || Sbjct 364 --ACCCTACTCATGGTGGTTTCAAGGGTATACCACTAAACTGGACTAACGGACTTACCAA 421 Query 75187 TATTCCTCATGGTGCTCCACATTGGGGAGAATACCTTGATAAAGCATGGTTTGCTTTTAA 75246 |||||| | |||||||| | ||||| || || | ||| ||| ||||||||| | Sbjct 422 AATTCCTAAGGGTGCTCCTTACTGGGGTGAGTATTTAGATGTAGCTACCTTTGCTTTTGA 481 Query 75247 TGGTAATCTAGGATGGAACTCTGTAAACGCTACAGTATATGCTGTTAATGCAGATGGTAC 75306 |||| | || || ||||| | || || | || | ||| |||| | |||||| | Sbjct 482 TGGTGCTTTATCATATGACTCTATCAAGGCAAGTGTTAAGGCTCTTAAACCTGATGGTTC 541 Query 75307 AACAGATTGGTCTAAGAATGGAGATCAATGGGATGTTGATTGGATCAT--TGATCGTCTA 75364 || |||||| || |||| | | | || || |||||||| || || | | || Sbjct 542 TACTGATTGGGATAGTGATGGTGTAAAGTATGACGTAGATTGGATAATCCTG-TGGACTG 600 Query 75365 G-GACGTAAAGTTGATTGGGATGGAAATATCTTAGAAGAAGGTTTTCCAACATCTCAATA 75423 | ||| || || |||||||||||| || | || ||| | || | | | Sbjct 601 GTGAC--AAGGTAGATTGGGATGGAGATGTAATATCTTCTGGTCATACAGAAGAGGAGAA 658 Query 75424 CGGAACAGTTCAACTAAAAAATACTTCTGTAAACGGTACATATAAATTTAACTACGCGAC 75483 || || || |||||||| |||| | ||| | || | | |||| ||||||| || || Sbjct 659 AGGTACTGTACAACTAAAGGATACAACCGTACAAGGCATACATAAGTTTAACTTTGCCAC 718 Query 75484 TTGTAACCCTGTTGAACACGGTGGTTATTTAATGGA 75519 |||||||| | || || || || ||| | || || Sbjct 719 ACGTAACCCTCTAGAGCATGGCGGCTATCTTATTGA 754 >seq521708 Length=267 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 26678 GGATAATAAATCATAGGTTTATCGTAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTA 26737 |||||||||| ||| |||||||||||||| |||||||| ||||||| |||| ||| || Sbjct 197 GGATAATAAACCATCGGTTTATCGTAAATGGGTAATAGCTGTTTACAAACCACTTGGGTG 138 Query 26738 ACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGATAATACCTTT 26784 | ||||| |||| || || ||| || ||||| | ||| ||||| Sbjct 137 ATAGGGTATAGCCGAGTGCCTGAACCTCCAGCTAATAAAATGCCTTT 91 >seq518701 Length=520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/226 (69%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 27124 TCAACGTATAACCAGTCTCTTACTTGAAGA-CCATTACCATAAACAGGGATTGGTTTATG 27182 || || |||| |||||| | | ||| | || ||||| |||| ||| | ||||||| Sbjct 518 TCGACATATAGCCAGTCACGAATTTGCATCGCCCTTACCGTAAATAGGCAATGGTTTACC 459 Query 27183 CATTAAGATATTTGTTATCGTTTTAGGTATTAGTTTTTCTGGATGATGATATGCTCCAAA 27242 ||| |||| || || || || |||||||| ||| || || | ||| | Sbjct 458 TTCTAATGCATTTAAAATAATTAGCGGGATCAGTTTTTCAGGAAAGTGGTAAGGACCATA 399 Query 27243 ATTATTTGAACAATTTGTTATAACTGTCGGAATACCATAAGTACGATGCCACGCTCTTAC 27302 ||||||||| || || |||| | ||||| | |||||||||||| ||| || | ||| Sbjct 398 ATTATTTGAGCAGTTAGTTACGATAGTCGGTAAACCATAAGTACGTAACCAAGCACGTAC 339 Query 27303 CAAATGATCGCTTGCAGCTTTAGATGCAGCATATGGACTACTTGGT 27348 | || || |||| ||||| || || | ||| || ||||||||| Sbjct 338 TAGGTGGTCACTTGATGCTTTTGAAGCTGAATAAGGGCTACTTGGT 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472307404674240