Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq353462 129 6e-25 seq497288 118 1e-21 seq449735 116 4e-21 >seq353462 Length=332 Score = 129 bits (142), Expect = 6e-25 Identities = 210/297 (71%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 122067 AACGCCCAAGTCTCCACCCAAGTTTCCAGGGT-GGTGTCGGATACGATCGGCAGAAGAAC 122125 |||| ||| ||||| | ||| || || || || ||| |||| | |||| || || Sbjct 6 AACGTCCACGTCTCAATCCATGTCTCAAGCTCAGGAATCG-ATACCAATGGCAATAGCAC 64 Query 122126 TGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAGGATCTGATACTTCAGGTTGCTGAT 122185 |||| |||| ||| || || | |||||| || || | |||||||| ||||| ||||| Sbjct 65 CACGTTTGGGCTACGACCTTGGATAGAGTCGAGTAGCGTTTGATACTTTAGGTTACTGAT 124 Query 122186 GAAGATGTGCTTCTCGTGATCCGGA-AGATTCATGTAGTCAATTCGGTCACGGGTCACGT 122244 ||||| |||| ||||| | ||| | ||| || || || || ||||| | || | Sbjct 125 AAAGATATGCTGTTCGTG-TGAGGACAAATTGCCATAATCCATACGATCACGTGATACAT 183 Query 122245 TCACCTCTTCCGGACGCCAGAAGAATGCCAGTTGCTTTTCGATCAGCTTTTCGAACTTAG 122304 || ||||| |||||||| ||||| | |||||||||||| |||| | || || ||| Sbjct 184 CGACTTCTTCTGGACGCCAAAAGAACGACAGTTGCTTTTCAATCAATTGCTCAAAGATAG 243 Query 122305 CGTGTTTTTGCTGGTCATAACGAGAAACGTTCGGCGTCTCACCGAGGAACATCGGCT 122361 ||| ||||| ||||| ||||| | ||||| || | ||| | |||||||||| Sbjct 244 GGTGCTTTTGTTGGTCGTAACGCGCCACGTTGACCGGATTACCAAAAAACATCGGCT 300 >seq497288 Length=389 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 121982 CATGATGTCGTCAAAGACGATCGACGGGTCTGCCAGGATGTTGCGGATGATGTGGGTGTA 122041 ||||||||| ||||||||||| | ||||| | || || || ||||| ||||| || Sbjct 131 CATGATGTCATCAAAGACGATAGCAGGGTCATTGATAATATTACGAATGATATGGGTATA 190 Query 122042 CGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCCACCCAAGTTTCCAGGGTGGT 122101 || |||||||| |||||| |||| ||| ||||| | ||| ||||| || | Sbjct 191 GCTGCGCGAGTGAATGGTCTCAGAAAACGTCCACGTCTCAATCCACGTTTCAAGCTCAGG 250 Query 122102 GTCGGATACGATCGGCAGAAGAACTGCGTTCGGGCCACGGCCCTGTACAGAGTCCAGAAG 122161 || || | ||||| || || |||| |||| ||| || || | |||||| || || Sbjct 251 AATAGACACCAGCGGCAATAGCACCACGTTTGGGCTACGACCTTGGATAGAGTCGAGTAG 310 Query 122162 GATCTGATACTTCAGGTTGCTGATGAAGATGTGCT 122196 | |||||||||| ||||| ||||| ||||| |||| Sbjct 311 GGTCTGATACTTTAGGTTACTGATAAAGATATGCT 345 >seq449735 Length=3187 Score = 116 bits (128), Expect = 4e-21 Identities = 234/342 (68%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 122022 TTGCGGATGATGTGGGTGTACGAACGAGAGTGAATAGTCTCACTGAACGCCCAAGTCTCC 122081 || || || || || |||||||| || ||||| || ||||| |||||||| || || Sbjct 2151 TTACGAATAATATGCGTGTACGAGCGGCTATGAATCGTTTCACTAAACGCCCACGTTTCT 2092 Query 122082 ACCCAAGTTTCCAGGG-TGGTGTCGGATACGATCGGCAGAAGAACTGCGTTCGGGCCACG 122140 | ||| ||||| | |||| || |||| || || || || | |||| || ||| Sbjct 2091 ATCCATGTTTCTAACTCTGGTAGCG-ATACAATAGGTAGTAGGGCCACGTTTGGTGAACG 2033 Query 122141 GCCCTGTACAGAGTCCAGAAGGATCTGATACTTCAGGTTGCTGATGAAGATGTGCTTCTC 122200 || ||||| || || | | ||||| || | ||| || | || || ||||| || Sbjct 2032 CCCTTGTACGCTATCAAGCAATGTTTGATATTTTAAGTTACTTAAAAATATATGCTTTTC 1973 Query 122201 GTGATCCGGAAGATTCATGTA-GTCAATTCGGTCACGGGTCACGTTCACCTCTTCCGGAC 122259 ||||| || | || | || | ||| | ||||| | | |||| || ||||| || | Sbjct 1972 ATGATCAGGTA-ATGCTTGAAAGTCTAAGCGGTCTTTGCTTACGTCTACTTCTTCTGGGC 1914 Query 122260 GCCAGAAGAATGCCAGTTGCTTTTCGATCAGCTTTTCGAACTTAGCGTGTTTTTGCTGGT 122319 |||| || || | || |||||||| || || ||||| || ||| || |||||| || | Sbjct 1913 GCCAAAAAAACGAAAGCTGCTTTTCAATTAGTTTTTCAAAAATAGGGTATTTTTGTTGAT 1854 Query 122320 CATAACGAGAAACGTTCGGCGTCTCACCGAGGAACATCGGCT 122361 |||||||||| ||||| || | |||| ||||| |||| Sbjct 1853 CATAACGAGATACGTTAACGGTTTGGCCGAAAAACATTGGCT 1812 Score = 82.4 bits (90), Expect = 7e-11 Identities = 191/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 121545 CCGATCATGGAACCATCTTTGAACAGGAAGCTGCCCCAATCCTTCTCCTGCACAGAGGCG 121604 || ||||| || ||||||||||| | | | | |||| || || || ||| | | ||| Sbjct 2661 CCAATCATTGAGCCATCTTTGAATAAGTACTCGGCCCATTCTTTTTCTTGCTCTGCAGCG 2602 Query 121605 TCGATAAAGCCCTGTCGTGCTTCCTCGTAGCAGTCCTCCGCAACACGAGCAAA--CAGGT 121662 || | ||| | |||||| ||| ||| | | | |||||| || | | || Sbjct 2601 TCCACAAACATTTTAATTGCTTCGTCGCGGCACTGCGCGGCAACAATCGCCATTTCTGGA 2542 Query 121663 CCCCTTCGTTACCATTTTGCATTTCTCTCAGCATATACTGAGTTCCTGACAAATGCAAGG 121722 | || ||||| | |||||| | | |||| |||||| || || ||||| | | Sbjct 2541 TCG--TCTTTACCGTCTTGCATAATATTTAAAATATGCTGAGTGCCAGATAAATGTAGCG 2484 Query 121723 CTTCATCACGAGCAATTAACTCGATGATGTTGGTATTGCCCAGCATAACCCCACGCTCAC 121782 ||||||| || ||||| | || ||| || || | || || ||| | |||||||| Sbjct 2483 CTTCATCGCGGGCAATAAGCTTGATTATTTTAGCGTTACCTTCCATCAATTCACGCTCAG 2424 Query 121783 CGAAAGCGAAGGAGCAGGCAAAGCTCACGTAGAAGCGGATAGCTTC 121828 | || || || |||||||||||||| || || || || || ||||| Sbjct 2423 CAAACGCAAACGAGCAGGCAAAGCTGACATAAAAACGAATCGCTTC 2378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482836186169280