Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq339348 215 2e-50 seq223647 161 3e-34 seq462036 159 1e-33 seq495280 100 9e-16 seq499446 96.9 1e-14 seq505631 86.0 2e-11 seq24926 84.2 7e-11 >seq339348 Length=849 Score = 215 bits (238), Expect = 2e-50 Identities = 430/629 (68%), Gaps = 10/629 (2%) Strand=Plus/Minus Query 188932 GATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATT 188991 ||||||||| | ||| ||| ||||||| ||||| || || |||||| | ||||||||| Sbjct 812 GATTACGATGTAGAAAAAGCACAACGTGGTATTGTTTACATAGATGAAATTGATAAAATT 753 Query 188992 GCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAA 189051 || | |||||||| | | | || ||||| || |||||||| |||||||| || || ||| Sbjct 752 TCTCGTAAATCAGACAACCCGTCAATTACGCGTGATGTATCAGGCGAAGGCGTGCAACAA 693 Query 189052 GCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAA 189111 || || | ||| | || ||||| || | || ||||| || |||||||| ||||| Sbjct 692 GCACTACTTAAACTGATAGAAGGCACCATAGCTTCGGTTCCACCACAAGGTGGCCGTAAG 633 Query 189112 CACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGA 189171 ||||| || ||||| | | || ||||||| |||| |||||||||||| |||||| Sbjct 632 CACCCACAGCAAGAGTTTTTACAAGTAGATACGTCTAAAATCTTGTTTATTTGTGGTGGC 573 Query 189172 GCGTTTGATGGTCTTGAAAACATTATCAAGAGACG-CGCTACAAAATCAAC--TTTAGGT 189228 || || |||||||| || | || || ||| || | |||| | | | | ||| Sbjct 572 GCATTCTCAGGTCTTGATAAAGTGATTGAGCAACGTAGCCATAAAAATACCGGTATTGGT 513 Query 189229 TTTGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGATGACAATAAAGTATTCCAA 189288 |||| || | ||| ||||| | || | | | | | | ||| || Sbjct 512 TTTGGTGTTGATGT---TAAAGAGTCTGCAGCGAGCCGTTCTTTAAGTGATACATTTAAA 456 Query 189289 CATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTA 189348 | | | || | ||| | |||||||| || || || || || ||||| || ||| || Sbjct 455 GACGTAGAGCCAGAGGATTTAGTTAAGTACGGCTTGATCCCTGAGTTTATCGGCCGTTTA 396 Query 189349 CCAGTAATCGCAACTCTTAAC-AAACTTGATCGAGATGCATTGATTAACATTTTAACTGA 189407 || ||| | || || ||||| |||||||| || |||| | || | ||||||| ||| Sbjct 395 CCGGTAGTTGCTAC-ATTAACTGAACTTGATGAAGCTGCACTAATACAAATTTTAAGTGA 337 Query 189408 GCCGCAAAACGCTATCATTAAACA-ATATCAGAAATTGTTAGATATGGATGGCGTGGAAT 189466 ||| ||||||| || | |||||| | |||| |||||| | |||||| | || || Sbjct 336 GCCTAAAAACGCCATTACTAAACAGTTTTCAG-TATTGTTTGGTATGGAAGATGTTGAGC 278 Query 189467 TAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATACTG 189526 | || || | | || || |||| ||||||| | |||| || || ||||| || | Sbjct 277 TTGAGTTTCGCGATGATGCCTTAGCTGCAATTGCCCACAAAGCAATGGAGCGTAAAACAG 218 Query 189527 GTGCTCGCGGATTACAATCCATTATTGAA 189555 ||||||| || || | || || ||||| Sbjct 217 GTGCTCGTGGTTTGCGTTCAATCGTTGAA 189 >seq223647 Length=875 Score = 161 bits (178), Expect = 3e-34 Identities = 263/379 (69%), Gaps = 0/379 (0%) Strand=Plus/Minus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 ||||||| || ||||| ||||| || || | || ||||| ||||| | | | ||| Sbjct 387 TTGGCCCAACGGGTTCTGGTAAGACCTTGCTGGCGCAAACCTTGGCGCGTCTACTGGATG 328 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 | ||| | || || | ||||| || | || || ||||| |||||||| |||||||||| Sbjct 327 TGCCTTTTGCGATGGCCGATGCGACGACCTTGACCGAAGCAGGTTATGTCGGTGAAGATG 268 Query 188897 TGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAAC 188956 | |||||| | ||| | | |||||| | ||||| ||| | ||| || | Sbjct 267 TCGAAAACATCGTGCAAAAACTTTTGCAAGCATCAGATTATGATGTGAGCAAAGCAGAGC 208 Query 188957 GTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCA 189016 || || | ||||||||||| | |||||||| || ||| || | | | || | Sbjct 207 AAGGCATCATCTATATCGATGAGATTGATAAAATCAGTAAGAAAGGCGACAACCCGTCTA 148 Query 189017 TTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTA 189076 | || || ||||| || |||||||| ||||||||||| || |||| | || ||||||| Sbjct 147 TCACGCGTGATGTGTCAGGCGAAGGCGTACAGCAAGCGTTGCTAAAGCTTATCGAAGGTA 88 Query 189077 CAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAA 189136 | ||||| |||| || || ||||||||||| || || || ||||| || | || Sbjct 87 CGGTTGCTGCCATTCCGCCGCACGGTGGTCGTAAGCATCCACAGCAAGAGCTGATCCAAG 28 Query 189137 TAGATACAACTAATATCTT 189155 | ||||| | ||| ||||| Sbjct 27 TTGATACGAGTAACATCTT 9 >seq462036 Length=625 Score = 159 bits (176), Expect = 1e-33 Identities = 251/358 (70%), Gaps = 1/358 (0%) Strand=Plus/Minus Query 188834 ATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAG 188893 |||| ||| | || || | ||||| || |||| || ||||| |||||||| ||||||| Sbjct 596 ATGTTCCTTTTGCGATGGCGGATGCCACGACTTTGACCGAAGCCGGTTATGTCGGTGAAG 537 Query 188894 ATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGG 188953 | || |||||| | | | || | |||||| | ||||| ||| | ||||| Sbjct 536 ACGTTGAAAACATCGTACAGAAGCTATTACAAGCATCAGATTATGATGTTAGTAAAGCGG 477 Query 188954 AACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACAT 189013 | | || || | ||||| ||||| | |||||||| | |||| || | | | | Sbjct 476 AGCAAGGCATCATCTATATTGATGAGATTGATAAAATCAGCAAAAAAGGTGATAAC-CTT 418 Query 189014 CCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAG 189073 | || || || ||||| || || ||||| ||||||||||| || ||||| | || |||| Sbjct 417 CTATCACGCGTGATGTGTCGGGTGAAGGCGTACAGCAAGCATTGCTAAAACTTATCGAAG 358 Query 189074 GTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTG 189133 |||| || ||| |||| || || ||||||||||| || || || ||||| || | Sbjct 357 GTACGGTCGCGGCTATTCCGCCACATGGTGGTCGTAAGCATCCGCAGCAAGAGTTGATCC 298 Query 189134 AAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAA 189191 || | ||||| | ||||| ||| |||| |||| || ||||||| |||||||| || Sbjct 297 AAGTCGATACCAGCAATATTTTGATTATCGTTGGCGGTGCGTTTGCCGGTCTTGATAA 240 >seq495280 Length=603 Score = 100 bits (110), Expect = 9e-16 Identities = 220/327 (67%), Gaps = 16/327 (5%) Strand=Plus/Plus Query 188645 TTATTGGACAAGAAAAAGC--AAAACGTCAATTAGCTGTATCAGTTTATAATCATTATAA 188702 ||||||| ||||| | || |||| || ||||||||| | ||||| ||||||||||| Sbjct 291 TTATTGGTCAAGACCATGCTAAAAAAGT--ATTAGCTGTTGCCGTTTACAATCATTATAA 348 Query 188703 GCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagtaaagatcaaaaaaTC 188762 || |||| | ||||| | | | || | || || || | ||| Sbjct 349 ACG-ATTA-----CGTAATGGTGATACTCATAACGGTGTTG------AGTTGGGTAAAAG 396 Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822 |||| || | | |||| ||||||||| |||||||||||| | || || || | || Sbjct 397 TAATATTTTACTTATTGGGCCTACTGGTAGTGGTAAAACATTACTAGCACAGACCCTTGC 456 Query 188823 TGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTA 188882 | ||| |||| || | |||| |||||||||| | ||||| ||||||||||| Sbjct 457 ACGGTTATTAGATGTGCCATTTACTATGGCTGATGCAACAACATTAACTGAAGCTGGTTA 516 Query 188883 TGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATAT 188942 ||| ||||||||||| |||||| | | | ||| | ||| | |||||||||| | Sbjct 517 TGTTGGTGAAGATGTTGAAAACATCATTCAGAAATTATTACAAAAATGTGATTACGATGT 576 Query 188943 CGAATTAGCGGAACGTGGAATTGTATA 188969 ||| ||| | || || ||||| || Sbjct 577 AGAAAAAGCCCAGCGCGGTATTGTCTA 603 >seq499446 Length=572 Score = 96.9 bits (106), Expect = 1e-14 Identities = 201/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 189293 TTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTACCAG 189352 || ||||||||||| | ||||| |||||||||||||| || |||||||| || |||| | Sbjct 516 TTGAACCGCAAGATTTAGTTAAATATGGTTTAATTCCTGAGTTTATTGGTCGCTTACCTG 457 Query 189353 TAATCGCAACTCTTA-ACAAACTTGATCGAGATGCATTGATTAACATTTTAACTGAGCCG 189411 | | ||||| |||| |||| ||| |||||| | ||| | || || || || Sbjct 456 TTTTAGCAAC-CTTACGTGAACTCGATGAAGATGCGCTTATTCAAATATTGCAAGAACCT 398 Query 189412 CAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGGAATTAGAA 189471 |||| || | | |||||| | | | | || |||||||| || |||||||| Sbjct 397 AAAAATGCGTTAACTAAACAGTTTACTGCACTATTTGATATGGAAAATGTCGAATTAGAG 338 Query 189472 TTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATACTGGTGCT 189531 || | || || ||| || | || ||| | |||| || || | || || ||||| Sbjct 337 TTTAGACCTGATGCGTTAAAAGCTATAGCACGTAAAGCTATGGATAGAAAAACAGGTGCA 278 Query 189532 CGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGAAGTTCCA 189588 || || |||| || ||| ||||| | || | | ||| ||||||||| | ||| Sbjct 277 CGTGGTTTACGCTCTATTGTTGAAGCTGTTTTACTTGATACTATGTATGAATTACCA 221 >seq505631 Length=459 Score = 86.0 bits (94), Expect = 2e-11 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 188769 TCTT-TTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATA 188827 |||| ||| |||| ||||| ||| |||||||||||| | || |||| || || Sbjct 140 TCTTATTAATTGGTCCTACAGGTAGTGGTAAAACATTACTAGCAGAAACGTTAGCACGCT 81 Query 188828 TGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAG 188887 | ||| |||| || | |||| | |||||||| | ||||| ||||| |||||||| | Sbjct 80 TATTAGATGTGCCGTTTACTATGGCCGATGCAACCACATTAACCGAAGCGGGTTATGTGG 21 Query 188888 GTGAAGATGTGGAAAAC 188904 |||||||||| |||||| Sbjct 20 GTGAAGATGTTGAAAAC 4 >seq24926 Length=5984 Score = 84.2 bits (92), Expect = 7e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 403933 AATATTGTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTA 403992 || ||| ||||| ||||||||| |||||||||||| ||||||||||| | ||||| | Sbjct 5753 AAGATTAAGCGCCAGTAGCTCAGTTGGATAGAGCACCCGCCTTCTAAGCGGGTGGTCGCA 5812 Query 403993 GGTTCGAATCCTACCAGGCGC 404013 |||||||||||| || || || Sbjct 5813 GGTTCGAATCCTGCCGGGTGC 5833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1581192076231296