Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_023865.1 Length=55098 Score E Sequences producing significant alignments: (Bits) Value seq520575 149 2e-31 seq515220 86.0 2e-12 >seq520575 Length=499 Score = 149 bits (164), Expect = 2e-31 Identities = 322/480 (67%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 27418 TTCTGCCACAACGTAACAAGTCACAATATTATAACCTCATATGCTGAGGACGTTGTTCTG 27477 ||||||||||| | | |||||||| || ||||| |||||||| ||||||||| Sbjct 14 TTCTGCCACAATGCTTCCTCCCACAATATCATCACCTCTTATGCTGATGACGTTGTTGGT 73 Query 27478 GAATCAAGC---GGCTATATCCGCACTGTGATGTTAGACCCACTCTTCCAACGAATCTTC 27534 ||| ||| ||||| ||||| || | ||| || | || || | || Sbjct 74 GAA---AGCTCTGGCTACATCCGAACCATTATGACTAACGAGTTGTTTGGTCGGGTGTTT 130 Query 27535 CCAAATGTTCGAATTGACCCGAACAAGAGAAGCTTGGAACGTTGGGGTACGACAAAGCAA 27594 || |||| |||||| | || | || | || ||||||||||| || || Sbjct 131 CCTCATGTAAAGATTGACTCCTCGAAACGGAGTCTTGAGCGTTGGGGTACAACTAAAGGC 190 Query 27595 GGTGTAATGCACGCTGTTCCAACTGGTGGTAAGATGACTGGTAAAGGTGCTGGACTTTTG 27654 || || | ||||| ||||| |||| |||||| |||| ||||| |||||||| ||| Sbjct 191 GGCGTGCTTCACGCAGTTCCGTCTGGCGGTAAGTTGACAGGTAAGGGTGCTGGTAGCTTG 250 Query 27655 GCACCAACGTATTCTGGTTGTTTCGTCGTTGATGACGTTATTAAACCAAAAGACGCATAC 27714 | | | ||| ||||| | || | |||||| |||| || || || || |||||| Sbjct 251 TCTACTAAGTACTCTGGCGTACTTGTGCTCGATGACATTATCAAGCCCAAGGATGCATAC 310 Query 27715 TCAGATACCGTTCGTACAGAAATCAATGACCGATATGACAACACATTCATGTCGCGCCTG 27774 || || | |||||||| || || || || || || |||||||| | ||||||||||| Sbjct 311 TCCAATGCTGTTCGTACCGAGATTAACGATCGTTACGACAACACCCTGATGTCGCGCCTT 370 Query 27775 GCCAACGATGGTGAAAT---AACTGTTGATGGCAAGCCTGTCAAATGCCCTCGCACTCCG 27831 || |||||||| || | || || || || | ||| || || |||| || || Sbjct 371 GCTAACGATGGCGAGGTGCAGGATGAAGAAGGTAACCGTGTAAAGTGTGCTCGTACACCT 430 Query 27832 ATGGTAATCATCATGCAGAGGGTTCATGATTCAGACTTAGTTGGCTATCTTCTTCGGGGC 27891 | | || || |||||| |||| ||||| ||| | || ||||| |||||||| ||| Sbjct 431 GTAGCTATTATTATGCAGCGGGTACATGACGAGGACCTTGTGGGCTACCTTCTTCGCGGC 490 >seq515220 Length=618 Score = 86.0 bits (94), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 27982 AAGCAAGGATACACCCACGCTATTCCAATCTTGTTTAACCTGAATCGTGAAGCTGAGAAA 28041 || ||||| || || ||||| | |||||| | | ||| ||||||| || | Sbjct 116 AAACAAGGTTATACGCACGCCAAGCCAATCCTCTACAACTTGAATCGCTCAGAGTCGCCC 175 Query 28042 TCTGCTTTATGGGCATCTCGCAAAAGC-CTTGAATCACTTGAGGCAATGAAGAAAGCGAA 28100 | || || ||| | ||||| || || ||||| || | || ||||| | || | Sbjct 176 ACAGCATTGTGGCCTTCTCGTAAGAGGTCTTGAGACATTGCAGAAGATGAAAGAGACGCA 235 Query 28101 CCCGTACACTTACAATAGCCAGTATGCTGGCGACCCAAGTGCACAAGGTCATGGGCTAAT 28160 || || |||||||| || ||||||| ||||||||||| ||| |||| |||||| | Sbjct 236 GCCTTATACTTACAACAGTCAGTATGATGGCGACCCAACTGCCAAAGGCACTGGGCTGCT 295 Query 28161 TAAAGAAGAGTGGTGGCAGGAATATGA 28187 | ||||||||||||||||| ||||| Sbjct 296 GGATGAAGAGTGGTGGCAGGAGTATGA 322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175092502675440