Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq509673 129 6e-25 seq449735 89.7 5e-13 >seq509673 Length=441 Score = 129 bits (142), Expect = 6e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 139725 TGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTTTTCAGA 139784 || || |||||||||| ||||| | ||||| ||||| ||||| ||| |||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 139785 ACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCACCACCA 139844 || | || |||||||| || ||||| | ||| || |||||||||||||||| ||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 139845 CGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAAGGAAT 139903 || || || ||||| || ||| ||||||| ||||| ||||| |||| |||| || || Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGAT 406 >seq449735 Length=3187 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 138168 GGTGCTCGTCCTTGAACTGAATCAAGGAGTGTTTGATATTTCAAGTTGTTGGTGAAAAT- 138226 |||| || ||||| || |||||| | |||||||||||| ||||| | | ||||| Sbjct 2040 GGTGAACGCCCTTGTACGCTATCAAGCAATGTTTGATATTTTAAGTTACT--TAAAAATA 1983 Query 138227 ---GCCTTGATCGTTTTCAGACATTTTCTGGAATTGAACACGATCTTTGGATACGTCTAC 138283 || || || | |||| | | || || | | || |||||| ||||||||| Sbjct 1982 TATGCTTT--TCATGATCAGGTAATGCTTGAAAGTCTAAGCGGTCTTTGCTTACGTCTAC 1925 Query 138284 TTCTTCTGGACGCCAAAAGAAGGAGAGTTGCTTTTCAGTCAACTTTTCAAATTTTTCGTG 138343 ||||||||| |||||||| || || || ||||||||| | | |||||||| | || Sbjct 1924 TTCTTCTGGGCGCCAAAAAAACGAAAGCTGCTTTTCAATTAGTTTTTCAAAAATAGGGTA 1865 Query 138344 TTTTGGATCATCGTATCGAGCTACG 138368 |||| | | ||| || |||| |||| Sbjct 1864 TTTTTGTTGATCATAACGAGATACG 1840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531608096101920