Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq449735 196 5e-45 seq506238 136 4e-27 seq509673 123 3e-23 seq351952 104 3e-17 seq511551 93.3 5e-14 >seq449735 Length=3187 Score = 196 bits (216), Expect = 5e-45 Identities = 488/735 (66%), Gaps = 7/735 (1%) Strand=Plus/Plus Query 27240 AAGTTTCATTGCCTACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCT-CT 27298 || ||||| | ||||| |||||||||||||||| |||||| ||||| |||||||| || Sbjct 26 AAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCT 85 Query 27299 AGTTGTGTAGTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTCAGCATCA 27358 || ||||| | || || || || | | || |||||| || || | || Sbjct 86 CGT-GTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144 Query 27359 ATTATTGAATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCA 27418 ||| || |||| | || |||| || || || || || |||| ||| |||||||| Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204 Query 27419 GAAGGTTCTAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAA 27478 ||| | || | | || |||| ||||||||| |||||| || | || Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264 Query 27479 CATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACA 27538 || || ||||| || || ||| ||||| ||||| ||| | ||||| || || || || Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324 Query 27539 GCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAA 27598 || || ||| | ||||| ||||||||||| ||||| ||||| || |||||||| Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384 Query 27599 GGTGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAGATTAATGACCTTATG 27658 || || ||||| ||||| | || ||| | || ||||| | ||| ||||| | || ||| Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444 Query 27659 ATGGAACGCCTTGGTAAAAATGATTATATTACTTTATTTAGCCCTCACGAAATGTCAGGC 27718 || | |||| | || || ||||| || |||||||| || || ||||| Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC 504 Query 27719 GAACTATACTACTCGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCT 27778 || ||| | | || |||||||| ||||| | || | |||||||| ||| Sbjct 505 ---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTATGTAAAATAC 561 Query 27779 GAAAAAGACCCAACAATCAGAAAGAAAAGAATCAAAGCACTAGAACTCTTTGAATTGTTC 27838 ||| ||||| | |||| | || ||| | || ||||| | ||||| || | |||| Sbjct 562 GAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATGTTT 621 Query 27839 ATGACTGAACGTTCTGGCACTGCTCGAATTTATCCACAGTTTGTTGACAACACGAATAAC 27898 | |||||| | | || | ||| ||||| ||| |||||| || |||| Sbjct 622 GCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTGTAATACG 681 Query 27899 TATACTCCATTTATTCGCGAAA-AAGCTCCAATTCGCCAGAGTAACTTATGTTGTGAAAT 27957 | | || || ||| || ||| || || |||||||| ||| ||||||| ||||| Sbjct 682 CACAGCCCGTTCATT-GCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTTAGAAAT 740 Query 27958 CGCTATTCCAACTAA 27972 || | |||||||| Sbjct 741 TGCATTACCAACTAA 755 >seq506238 Length=275 Score = 136 bits (150), Expect = 4e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 ||||||||||| | ||||| || || | ||||||||||| |||||||||| ||||| Sbjct 218 GGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTTAAA 159 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 || || ||||||||||| || | || || |||||||| ||||| ||||| || |||||| Sbjct 158 CACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTTAAC 99 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGA 108591 || | || |||||||| |||| ||||| | | ||||| ||||| || Sbjct 98 TCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49 >seq509673 Length=441 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27452 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 27511 ||||||||| ||| ||||||| |||| ||||||||||| || |||| || || ||| Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359 Query 27512 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 27571 || || | ||||| ||||| || || || ||| || | ||||| |||||||| ||| Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299 Query 27572 AACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACATATGGAC 27631 |||| || ||||||||||| || ||||| || |||||| | || |||||||| Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239 Query 27632 TACGGAATTCAGATTAAT 27649 ||||| | ||| | ||| Sbjct 238 TACGGCGTACAGTTAAAT 221 >seq351952 Length=416 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481 |||||||||||| | |||||||| || || ||||||| | |||||| | | Sbjct 200 GGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCAATGGAA 141 Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541 |||| || || ||||| || | || || |||||||| ||||| ||||| || |||||| Sbjct 140 AATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGATTTAAC 81 Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601 || | ||| ||||||| ||| || || ||| | ||||||||||| | || |||||| Sbjct 80 TCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTACAGCGACGCTATAA 21 >seq511551 Length=634 Score = 93.3 bits (102), Expect = 5e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 124914 TTCCCTAAACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTATAAAG-ACGACCCGAA 124972 |||||||| ||| | | ||| |||| |||||||| ||||| | || | ||||| || Sbjct 227 TTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAA-CTTTAAACAGGAAGACCCAAA 285 Query 124973 CTATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTAT 125032 |||| ||||||| ||| | |||||||||||||| || || | ||||| ||||||||||| Sbjct 286 CTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCTGATATTAT 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537590936311360