Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_024124.2
Length=169148
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 196 5e-45
seq506238 136 4e-27
seq509673 123 3e-23
seq351952 104 3e-17
seq511551 93.3 5e-14
>seq449735
Length=3187
Score = 196 bits (216), Expect = 5e-45
Identities = 488/735 (66%), Gaps = 7/735 (1%)
Strand=Plus/Plus
Query 27240 AAGTTTCATTGCCTACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCT-CT 27298
|| ||||| | ||||| |||||||||||||||| |||||| ||||| |||||||| ||
Sbjct 26 AAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCT 85
Query 27299 AGTTGTGTAGTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTCAGCATCA 27358
|| ||||| | || || || || | | || |||||| || || | ||
Sbjct 86 CGT-GTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144
Query 27359 ATTATTGAATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCA 27418
||| || |||| | || |||| || || || || || |||| ||| ||||||||
Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204
Query 27419 GAAGGTTCTAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAA 27478
||| | || | | || |||| ||||||||| |||||| || | ||
Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264
Query 27479 CATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACA 27538
|| || ||||| || || ||| ||||| ||||| ||| | ||||| || || || ||
Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324
Query 27539 GCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAA 27598
|| || ||| | ||||| ||||||||||| ||||| ||||| || ||||||||
Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384
Query 27599 GGTGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAGATTAATGACCTTATG 27658
|| || ||||| ||||| | || ||| | || ||||| | ||| ||||| | || |||
Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444
Query 27659 ATGGAACGCCTTGGTAAAAATGATTATATTACTTTATTTAGCCCTCACGAAATGTCAGGC 27718
|| | |||| | || || ||||| || |||||||| || || |||||
Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC 504
Query 27719 GAACTATACTACTCGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCT 27778
|| ||| | | || |||||||| ||||| | || | |||||||| |||
Sbjct 505 ---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTATGTAAAATAC 561
Query 27779 GAAAAAGACCCAACAATCAGAAAGAAAAGAATCAAAGCACTAGAACTCTTTGAATTGTTC 27838
||| ||||| | |||| | || ||| | || ||||| | ||||| || | ||||
Sbjct 562 GAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATGTTT 621
Query 27839 ATGACTGAACGTTCTGGCACTGCTCGAATTTATCCACAGTTTGTTGACAACACGAATAAC 27898
| |||||| | | || | ||| ||||| ||| |||||| || ||||
Sbjct 622 GCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTGTAATACG 681
Query 27899 TATACTCCATTTATTCGCGAAA-AAGCTCCAATTCGCCAGAGTAACTTATGTTGTGAAAT 27957
| | || || ||| || ||| || || |||||||| ||| ||||||| |||||
Sbjct 682 CACAGCCCGTTCATT-GCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTTAGAAAT 740
Query 27958 CGCTATTCCAACTAA 27972
|| | ||||||||
Sbjct 741 TGCATTACCAACTAA 755
>seq506238
Length=275
Score = 136 bits (150), Expect = 4e-27
Identities = 132/170 (78%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481
||||||||||| | ||||| || || | ||||||||||| |||||||||| |||||
Sbjct 218 GGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTTAAA 159
Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541
|| || ||||||||||| || | || || |||||||| ||||| ||||| || ||||||
Sbjct 158 CACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTTAAC 99
Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGA 108591
|| | || |||||||| |||| ||||| | | ||||| ||||| ||
Sbjct 98 TCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49
>seq509673
Length=441
Score = 123 bits (136), Expect = 3e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27452 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 27511
||||||||| ||| ||||||| |||| ||||||||||| || |||| || || |||
Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359
Query 27512 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 27571
|| || | ||||| ||||| || || || ||| || | ||||| |||||||| |||
Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299
Query 27572 AACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACATATGGAC 27631
|||| || ||||||||||| || ||||| || |||||| | || ||||||||
Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239
Query 27632 TACGGAATTCAGATTAAT 27649
||||| | ||| | |||
Sbjct 238 TACGGCGTACAGTTAAAT 221
>seq351952
Length=416
Score = 104 bits (114), Expect = 3e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 108422 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 108481
|||||||||||| | |||||||| || || ||||||| | |||||| | |
Sbjct 200 GGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCAATGGAA 141
Query 108482 CATCCGGAAAAATATCCTCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 108541
|||| || || ||||| || | || || |||||||| ||||| ||||| || ||||||
Sbjct 140 AATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGATTTAAC 81
Query 108542 TCTCTGACTCCAGAACAGCAGCGCGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 108601
|| | ||| ||||||| ||| || || ||| | ||||||||||| | || ||||||
Sbjct 80 TCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTACAGCGACGCTATAA 21
>seq511551
Length=634
Score = 93.3 bits (102), Expect = 5e-14
Identities = 94/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 124914 TTCCCTAAACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTATAAAG-ACGACCCGAA 124972
|||||||| ||| | | ||| |||| |||||||| ||||| | || | ||||| ||
Sbjct 227 TTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAA-CTTTAAACAGGAAGACCCAAA 285
Query 124973 CTATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTAT 125032
|||| ||||||| ||| | |||||||||||||| || || | ||||| |||||||||||
Sbjct 286 CTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCTGATATTAT 345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537590936311360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |