Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_024125.2
Length=168470
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 176 5e-39
seq506238 143 3e-29
seq487923 105 7e-18
seq351952 105 7e-18
seq511551 102 9e-17
seq509673 102 9e-17
seq326422 84.2 2e-11
>seq449735
Length=3187
Score = 176 bits (194), Expect = 5e-39
Identities = 402/594 (68%), Gaps = 17/594 (3%)
Strand=Plus/Minus
Query 140582 AATAGTTCACGGGCTTTAATACGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCTGCTT 140639
|| |||||| |||||||| || ||||||||||| ||| | |||| ||| | |
Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTATTTTA 554
Query 140640 CGTATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCGCCACC 140697
| |||| | || |||| ||||||||||| |||| | | || ||||| |||
Sbjct 553 C--ATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAG---GCCTGG 499
Query 140698 CATTTCATGCGGACTGAACAAAGTAATGTAATCGTTCTTTCCGAATCGTTCCATCATCAA 140757
|| ||| || || ||||| |||||||| |||| || || || ||| |
Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439
Query 140758 ATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTT 140817
| ||| | || || || ||||| | |||||| | |||||| || || || || |||
Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379
Query 140818 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 140875
|||||| | || | || ||||| ||||| |||||||||| || || | ||| ||
Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321
Query 140876 GCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTC 140935
|| ||||||||||| | || || || ||||| |||||| || || ||||| || ||
Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261
Query 140936 CAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCA 140995
||||||||||| ||| |||||| |||| || ||| ||| | ||| |||
Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCA 201
Query 140996 CGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAA 141055
||||| ||| ||||||| ||||| || || |||| || | |||| |||||||| |
Sbjct 200 CGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCA 141
Query 141056 GCGGAAGCCTTATTGATAGACTTCAATG-AATCTCCTGCCTCAATAACAACACATGAACT 141114
| || | || || || |||| | || || ||| || | ||||| || ||
Sbjct 140 GACGAGGTGGCGTTAATTGA-ATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCT 82
Query 141115 AAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 141168
|||||| || || || ||||| ||| |||||||| || || || | ||||||
Sbjct 81 AAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28
>seq506238
Length=275
Score = 143 bits (158), Expect = 3e-29
Identities = 142/184 (77%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 62911 ATTACAAACTCTCGGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 62970
||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 62971 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 63030
||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 63031 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 63090
| ||||| |||||||||| ||||||||||| | || || ||||| | ||||||||||
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 63091 CTTC 63094
||||
Sbjct 218 CTTC 221
>seq487923
Length=1072
Score = 105 bits (116), Expect = 7e-18
Identities = 150/203 (74%), Gaps = 11/203 (5%)
Strand=Plus/Minus
Query 25179 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 25238
||| |||||||| |||| || || |||||||| ||||||||| |||||||| ||
Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472
Query 25239 CGTCATTTGAGCGCATGCTT---ACTACCGCATTGACTTTCTTATCACGAATCAGGTACT 25295
||||| ||||||| || || | || | ||| | ||| ||||||||||| | ||||
Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAG-ATTAA-TTTATTATCACGAATAAA-TACT 416
Query 25296 -GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAACTGCATA 25354
| || |||||||||| || ||||||||||| ||| |||| | ||| || |||
Sbjct 415 TGAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATA 356
Query 25355 GATGGACGAGTATAAATCATGAT 25377
|| || | |||||||||||| ||
Sbjct 355 GAAGGTCTAGTATAAATCATAAT 333
>seq351952
Length=416
Score = 105 bits (116), Expect = 7e-18
Identities = 127/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 62925 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62984
||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || |||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 62985 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 63044
|| ||||| |||||||| || || | || ||||| || || |||| | | ||||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 63045 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 63097
| ||||||| || || |||||||| | ||||||||||||||||||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206
>seq511551
Length=634
Score = 102 bits (112), Expect = 9e-17
Identities = 202/293 (69%), Gaps = 16/293 (5%)
Strand=Plus/Minus
Query 44302 AGAATCTAATGCGATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATC 44361
||| | || ||| | |||||| || || | |||| ||||| | || |||||||||||
Sbjct 508 AGATTGTAGTGCAACACGAGGTAGGTTTAAGCTTACCACACCTAAGTTGTTACGTCCATC 449
Query 44362 AAGAATTTCATTACCAGTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCATC 44419
|| | ||| ||||||| || ||||| |||| ||| | ||| || | ||| |||||
Sbjct 448 AAACACTTCCTTACCAGAAGAGTCTTT--ATACTCTCCAAGGAAGCTCCTGCAGCCCATG 391
Query 44420 GGAGAAACAGGAACAGATGAACCAGTGATAGCTTTATTGTTCT--TAGCTGAAATAATAT 44477
| | | || ||||| | || | | || | ||| ||| ||||||
Sbjct 390 CTTGCCTTAAAACCA------CCAGTAACCTCTACAATCTTATCGTAGTTGA--TAATAT 339
Query 44478 CAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTTCGGGT 44537
|||| ||||| | || || || ||||||||||| | ||||||||||| |||||| ||||
Sbjct 338 CAGGGTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGT 279
Query 44538 CGTCTT-TATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAA 44589
| || | | ||||| || ||||| |||| || | | ||||||||||||
Sbjct 278 CTTCCTGTTTAAAG-TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAA 227
>seq509673
Length=441
Score = 102 bits (112), Expect = 9e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 140768 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 140827
|| || || |||||||||||||| | ||||| ||||| ||||| |||||||||||
Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287
Query 140828 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 140887
|| | | |||||||| |||||||| | || ||| | || || || ||||||
Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347
Query 140888 CGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 140947
|| | || || ||||| || ||||||||||||| || || |||| | || || |||
Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407
Query 140948 ACACCAGTATG 140958
||| |||||
Sbjct 408 CAACCCGTATG 418
>seq326422
Length=2068
Score = 84.2 bits (92), Expect = 2e-11
Identities = 89/114 (78%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 71157 CGCTCTACCAAACTGAGCTACACGA--AGTAAATTAAATTTGAGCGGATAATGAGAATCG 71214
||||||||||| |||||||| | | | | |||| | |||||| | | ||||||
Sbjct 292 CGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATCG 350
Query 71215 AACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 71267
||| | ||||||||| ||||||| |||||||||| ||||||||||||| ||||
Sbjct 351 AACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535435587925600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |