Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024139.1 Length=108483 Score E Sequences producing significant alignments: (Bits) Value seq426744 228 6e-55 seq507483 165 6e-36 seq450559 109 4e-19 seq506238 107 1e-18 seq351952 91.5 1e-13 >seq426744 Length=341 Score = 228 bits (252), Expect = 6e-55 Identities = 242/313 (77%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 99159 ATTAAGATGCAGCGTAAGCACCAGATACAACACCATTACTA--AAGTA-ACGTTGCAGGT 99215 |||| | ||| ||||| | ||||| || | ||| |||| || | |||||| |||| Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88 Query 99216 TAACACGCTGAGTAACATAGTATGCATCACGCTGTTTACCAGCTTGACGCTCACGTTCAA 99275 ||| ||| ||||| || |||||||||||||| || ||||||||||||||||||||||| | Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148 Query 99276 CAGTAACAGCACGCTGACGTGGCATTACGAAGTTATCTTTATAAACGATAACTGCGAACT 99335 | |||| || ||| ||||| || | |||||||| || ||||||||| ||| | Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208 Query 99336 CTTTATCAGCAGCTTTAGCTGGGAAGTACTCAGAAACTACAACCGGCAGACCGTAAATAC 99395 || | ||||||||||||||||||| | |||||||| ||| | |||||||| |||| Sbjct 209 CTGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATAC 268 Query 99396 GACCAACCTGACCCTGTAG-TTTAAC-AG-CATCATTACCAACCTGGGCAACATCCTGCC 99452 ||||||| || || || || |||||| || ||| |||||| ||| ||||||||||| Sbjct 269 GACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGCC 328 Query 99453 ATTCTTCATCTTC 99465 ||||||||||||| Sbjct 329 ATTCTTCATCTTC 341 >seq507483 Length=1083 Score = 165 bits (182), Expect = 6e-36 Identities = 565/862 (66%), Gaps = 39/862 (5%) Strand=Plus/Plus Query 70483 TAAATTGACGGATACTGGAGCAGACTCTACAGATGCAGAAGCTCTGAACGAACTGTCTAC 70542 |||||| || | |||||| ||| |||||| |||||||||| || | |||| Sbjct 227 TAAATTTACAGGTACTGGTGCAATCTCTACTGATGCAGAAGTACTAGAAAAACTA----- 281 Query 70543 GCAGCATCCAATT-GCTAA--AACT--CTGCTAGAGATTCGTAAGCTAACTAAGCTGATC 70597 | || | || || |||| || | || || |||||||| ||| ||| || | | Sbjct 282 GGAGAAACCCATGAGCTACCCAAGTTACTACTGGAGATTCGCAAGGCAACAAAAGTACTT 341 Query 70598 TCTACTTACGTTGAGAAGATTCTTCTGAGCATTGATGCTGATGGTTGCATT--CGTACTG 70655 |||||| || ||||| | | |||||| |||||| |||| ||||| | Sbjct 342 AATACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAG 399 Query 70656 GCTTCCATGAACACATGACTACTTCTGGTCGTCTGAGTTCTTCTGGTAAACTGAACCTGC 70715 | || |||||| ||| ||||| |||||||| ||||| || || ||||| ||| | | Sbjct 400 GGTTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTAC 459 Query 70716 AACAGTTACCTCGTGATGAATCTATTATCAAGGGTTGTGTAGTAGCTCCTCCAGGGTATC 70775 | || | ||||||||||| |||| | ||||| ||| | ||||||||| | || ||| Sbjct 460 AGCAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATA 519 Query 70776 GTGTAATCGCATGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTG 70835 | ||| | || ||| | |||||||||| | | || || | || ||| | Sbjct 520 GAGTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGG 579 Query 70836 ATAGAA-ATATGCAACAAGTATTT-ATCAACATGAGAAATGAACCTGATAAATACCCTGA 70893 ||| || | | || |||| ||| | | | ||| | | || | || | || Sbjct 580 ATAAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGA 639 Query 70894 CTTCCAC---TCTAACATCGCCCACATGGTATTTAAACTGCAATGTGAACCTCGTGATGT 70950 ||||||| |||| | || |||||||| || || | | ||| | | | ||| | Sbjct 640 CTTCCACAGCTCTA---TTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGAA-T 695 Query 70951 TAAGAAGCT--GTTCCCAGCTCTACGTCAAGCAGCTAAGGCAATTACCTTTGGTATTTTG 71008 ||| ||||| |||||| || ||||||| || |||| || ||| | || |||||| | Sbjct 696 TAA-AAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTA 754 Query 71009 TATGGTTCTGGCCCGGCTAAAGTAGCACATTCTGTTAACGAAGCATTGCTAGAACAAGCA 71068 | ||| ||| || ||||| |||||| | ||| |||| || | | | || ||| Sbjct 755 TTCGGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACAT 814 Query 71069 GCCAAAACTGGTGAACCGTTTGTTGAATGTACTGTTGCAGAT---GCTAAAGAGTACATT 71125 | || || ||| || | | || || || | ||| |||||||| |||||| Sbjct 815 GTAAAGACGGGTTGCCCTTACG---AACCTATTGATAAAGAAACAGCTAAAGATTACATT 871 Query 71126 GAAACTTACTTCGGTCAGTTCCCGCAGCTTAAGCGTTGGATTGATAAGTGCCACGATCAG 71185 || |||||| ||| ||||| | || || ||||||||||| || ||| || ||| Sbjct 872 GATGTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAG 931 Query 71186 ATCAAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAGCGTCGTCTGCACAATATC 71245 || | ||||| ||||| ||||| ||||| || ||||| ||| | || | |||||| Sbjct 932 ATTCTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATC 991 Query 71246 CACTC--CGAAGACCGTG-GTGTTCAGGGTGAAGAAATT-CGTTCTGGATTTAACGCAAT 71301 | ||| || | | | |||| |||||||| || ||||| || || ||||| || Sbjct 992 CGCTCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTAT 1048 Query 71302 CATTCAGTCTGCTTCCTCTGAT 71323 |||||| || || |||||| Sbjct 1049 CATTCAAGGGGCATCATCTGAT 1070 >seq450559 Length=633 Score = 109 bits (120), Expect = 4e-19 Identities = 189/271 (70%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 53564 ACTGAAAAAGAA-GTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTT 53622 || |||||||| ||| ||||||| | ||| | ||||||||| | |||||| || Sbjct 296 ACCGAAAAAGAGTGTC-ATGACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354 Query 53623 CAACTCTAATGGTCAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCCTGGGA 53682 | | ||||||| || | || ||| ||||||||||||||||| |||| || ||||| Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAGGCGTGTCGTGGGA 414 Query 53683 AGCACGTCTAGTACAGAAAGCAGTACTGAAAGTACGCATGGATGGTTTAGGTATCAAT-- 53740 | ||| || | ||| || | | | | |||||| |||| |||||||||| ||| Sbjct 415 GTCGCGTTTAATTCAGCAATCGATGTTAACAGTACGTATGGCGGGTTTAGGTAAAAATCG 474 Query 53741 -AAACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGCGATGGCGTAAATATGAA 53799 ||| ||||| |||| || ||| |||| |||| || |||||||| ||| || Sbjct 475 CAAA---ACAGCAGTCTTTCCAAAATTGGTGTTTGCCATTAAAGATGGCGTGAATCATAA 531 Query 53800 ACCAGGAGATGTTAATTATGACATCAAGAAG 53830 | | |||| ||||||||| || || ||| Sbjct 532 AGCGACTGATGCTAATTATGATATTAAAAAG 562 >seq506238 Length=275 Score = 107 bits (118), Expect = 1e-18 Identities = 128/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 27354 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27413 ||||||||||| | | ||||| | ||||||||| | || | || ||||| || || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 27414 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 27472 ||||| || || ||||| || || || || |||||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 27473 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27523 | || | | ||||| | ||||||||| || |||| || ||||||||||| Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq351952 Length=416 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27354 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27413 ||||| ||||| | || || || | || |||||| ||| | | |||||||| || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 27414 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATCC 27473 ||||| || || ||||| || || || || ||||| || || |||| || | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 27474 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 27526 || | | |||||| | | ||||| || |||| ||| ||||||||||| || Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344798285983368