Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_024139.1
Length=108483
Score E
Sequences producing significant alignments: (Bits) Value
seq426744 228 6e-55
seq507483 165 6e-36
seq450559 109 4e-19
seq506238 107 1e-18
seq351952 91.5 1e-13
>seq426744
Length=341
Score = 228 bits (252), Expect = 6e-55
Identities = 242/313 (77%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 99159 ATTAAGATGCAGCGTAAGCACCAGATACAACACCATTACTA--AAGTA-ACGTTGCAGGT 99215
|||| | ||| ||||| | ||||| || | ||| |||| || | |||||| ||||
Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88
Query 99216 TAACACGCTGAGTAACATAGTATGCATCACGCTGTTTACCAGCTTGACGCTCACGTTCAA 99275
||| ||| ||||| || |||||||||||||| || ||||||||||||||||||||||| |
Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148
Query 99276 CAGTAACAGCACGCTGACGTGGCATTACGAAGTTATCTTTATAAACGATAACTGCGAACT 99335
| |||| || ||| ||||| || | |||||||| || ||||||||| ||| |
Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208
Query 99336 CTTTATCAGCAGCTTTAGCTGGGAAGTACTCAGAAACTACAACCGGCAGACCGTAAATAC 99395
|| | ||||||||||||||||||| | |||||||| ||| | |||||||| ||||
Sbjct 209 CTGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATAC 268
Query 99396 GACCAACCTGACCCTGTAG-TTTAAC-AG-CATCATTACCAACCTGGGCAACATCCTGCC 99452
||||||| || || || || |||||| || ||| |||||| ||| |||||||||||
Sbjct 269 GACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGCC 328
Query 99453 ATTCTTCATCTTC 99465
|||||||||||||
Sbjct 329 ATTCTTCATCTTC 341
>seq507483
Length=1083
Score = 165 bits (182), Expect = 6e-36
Identities = 565/862 (66%), Gaps = 39/862 (5%)
Strand=Plus/Plus
Query 70483 TAAATTGACGGATACTGGAGCAGACTCTACAGATGCAGAAGCTCTGAACGAACTGTCTAC 70542
|||||| || | |||||| ||| |||||| |||||||||| || | ||||
Sbjct 227 TAAATTTACAGGTACTGGTGCAATCTCTACTGATGCAGAAGTACTAGAAAAACTA----- 281
Query 70543 GCAGCATCCAATT-GCTAA--AACT--CTGCTAGAGATTCGTAAGCTAACTAAGCTGATC 70597
| || | || || |||| || | || || |||||||| ||| ||| || | |
Sbjct 282 GGAGAAACCCATGAGCTACCCAAGTTACTACTGGAGATTCGCAAGGCAACAAAAGTACTT 341
Query 70598 TCTACTTACGTTGAGAAGATTCTTCTGAGCATTGATGCTGATGGTTGCATT--CGTACTG 70655
|||||| || ||||| | | |||||| |||||| |||| ||||| |
Sbjct 342 AATACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAG 399
Query 70656 GCTTCCATGAACACATGACTACTTCTGGTCGTCTGAGTTCTTCTGGTAAACTGAACCTGC 70715
| || |||||| ||| ||||| |||||||| ||||| || || ||||| ||| | |
Sbjct 400 GGTTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTAC 459
Query 70716 AACAGTTACCTCGTGATGAATCTATTATCAAGGGTTGTGTAGTAGCTCCTCCAGGGTATC 70775
| || | ||||||||||| |||| | ||||| ||| | ||||||||| | || |||
Sbjct 460 AGCAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATA 519
Query 70776 GTGTAATCGCATGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTG 70835
| ||| | || ||| | |||||||||| | | || || | || ||| |
Sbjct 520 GAGTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGG 579
Query 70836 ATAGAA-ATATGCAACAAGTATTT-ATCAACATGAGAAATGAACCTGATAAATACCCTGA 70893
||| || | | || |||| ||| | | | ||| | | || | || | ||
Sbjct 580 ATAAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGA 639
Query 70894 CTTCCAC---TCTAACATCGCCCACATGGTATTTAAACTGCAATGTGAACCTCGTGATGT 70950
||||||| |||| | || |||||||| || || | | ||| | | | ||| |
Sbjct 640 CTTCCACAGCTCTA---TTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGAA-T 695
Query 70951 TAAGAAGCT--GTTCCCAGCTCTACGTCAAGCAGCTAAGGCAATTACCTTTGGTATTTTG 71008
||| ||||| |||||| || ||||||| || |||| || ||| | || |||||| |
Sbjct 696 TAA-AAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTA 754
Query 71009 TATGGTTCTGGCCCGGCTAAAGTAGCACATTCTGTTAACGAAGCATTGCTAGAACAAGCA 71068
| ||| ||| || ||||| |||||| | ||| |||| || | | | || |||
Sbjct 755 TTCGGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACAT 814
Query 71069 GCCAAAACTGGTGAACCGTTTGTTGAATGTACTGTTGCAGAT---GCTAAAGAGTACATT 71125
| || || ||| || | | || || || | ||| |||||||| ||||||
Sbjct 815 GTAAAGACGGGTTGCCCTTACG---AACCTATTGATAAAGAAACAGCTAAAGATTACATT 871
Query 71126 GAAACTTACTTCGGTCAGTTCCCGCAGCTTAAGCGTTGGATTGATAAGTGCCACGATCAG 71185
|| |||||| ||| ||||| | || || ||||||||||| || ||| || |||
Sbjct 872 GATGTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAG 931
Query 71186 ATCAAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAGCGTCGTCTGCACAATATC 71245
|| | ||||| ||||| ||||| ||||| || ||||| ||| | || | ||||||
Sbjct 932 ATTCTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATC 991
Query 71246 CACTC--CGAAGACCGTG-GTGTTCAGGGTGAAGAAATT-CGTTCTGGATTTAACGCAAT 71301
| ||| || | | | |||| |||||||| || ||||| || || ||||| ||
Sbjct 992 CGCTCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTAT 1048
Query 71302 CATTCAGTCTGCTTCCTCTGAT 71323
|||||| || || ||||||
Sbjct 1049 CATTCAAGGGGCATCATCTGAT 1070
>seq450559
Length=633
Score = 109 bits (120), Expect = 4e-19
Identities = 189/271 (70%), Gaps = 8/271 (3%)
Strand=Plus/Plus
Query 53564 ACTGAAAAAGAA-GTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTT 53622
|| |||||||| ||| ||||||| | ||| | ||||||||| | |||||| ||
Sbjct 296 ACCGAAAAAGAGTGTC-ATGACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354
Query 53623 CAACTCTAATGGTCAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCCTGGGA 53682
| | ||||||| || | || ||| ||||||||||||||||| |||| || |||||
Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAGGCGTGTCGTGGGA 414
Query 53683 AGCACGTCTAGTACAGAAAGCAGTACTGAAAGTACGCATGGATGGTTTAGGTATCAAT-- 53740
| ||| || | ||| || | | | | |||||| |||| |||||||||| |||
Sbjct 415 GTCGCGTTTAATTCAGCAATCGATGTTAACAGTACGTATGGCGGGTTTAGGTAAAAATCG 474
Query 53741 -AAACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGCGATGGCGTAAATATGAA 53799
||| ||||| |||| || ||| |||| |||| || |||||||| ||| ||
Sbjct 475 CAAA---ACAGCAGTCTTTCCAAAATTGGTGTTTGCCATTAAAGATGGCGTGAATCATAA 531
Query 53800 ACCAGGAGATGTTAATTATGACATCAAGAAG 53830
| | |||| ||||||||| || || |||
Sbjct 532 AGCGACTGATGCTAATTATGATATTAAAAAG 562
>seq506238
Length=275
Score = 107 bits (118), Expect = 1e-18
Identities = 128/172 (74%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 27354 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27413
||||||||||| | | ||||| | ||||||||| | || | || ||||| || ||
Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111
Query 27414 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 27472
||||| || || ||||| || || || || |||||||||||||| ||||| |||||
Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171
Query 27473 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27523
| || | | ||||| | ||||||||| || |||| || |||||||||||
Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221
>seq351952
Length=416
Score = 91.5 bits (100), Expect = 1e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 27354 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27413
||||| ||||| | || || || | || |||||| ||| | | |||||||| ||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 27414 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATCC 27473
||||| || || ||||| || || || || ||||| || || |||| || | ||||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 27474 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 27526
|| | | |||||| | | ||||| || |||| ||| ||||||||||| ||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 344798285983368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |