Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024140.1 Length=72028 Score E Sequences producing significant alignments: (Bits) Value seq486019 354 4e-93 seq488807 205 4e-48 seq255804 187 1e-42 seq523594 91.5 7e-14 seq469180 82.4 3e-11 >seq486019 Length=823 Score = 354 bits (392), Expect = 4e-93 Identities = 577/824 (70%), Gaps = 5/824 (1%) Strand=Plus/Plus Query 67825 CATCCACCCACAGCCAGTCTTCGTTGTGGGAGTAAGCCCAGACACTGATCACACTGAAGT 67884 |||| ||||| | ||| || | |||| ||||||||| ||| | |||||||| | Sbjct 1 CATCAACCCAGAACCAATCACCATTGTTATTGTAAGCCCACACAGATAAAACACTGAAAT 60 Query 67885 CACTCGCCTTCTTCGCAGAGGTAGCGAAGTCAGTGGTGATGTAGAAGTTGTACCGCTTCT 67944 | | |||| || || || |||||||| || || ||||||||| || | Sbjct 61 CCGCAGAGGTCTTTTCACTAGTTGCAAAGTCAGTTGTTATATAGAAGTTGAACTTACCTT 120 Query 67945 TGTTGTCCAGTACGTTGCGCC-GCATGTACCAAGCCACCTCACCATCCTGGATGAGACGG 68003 | || | | ||| || | | ||||||| | |||| ||| || || ||||| Sbjct 121 TATTTTTTAATACAA-GCTCATGTCTGTACCAGTTAATATCACAATCTTGAATTAGACGA 179 Query 68004 TCTTCGTCGGACATGATCTGGAGCATAAGCTCTTGGTTGAATGTCTCGATCTTCCCTGCC 68063 || ||||| |||||||| | | ||||||||||||||| ||||| || | ||| |||||| Sbjct 180 TCCTCGTCTGACATGATTCGTAACATAAGCTCTTGGTTAAATGTATCCACCTTACCTGCC 239 Query 68064 TTCTTGGCCAGGGTGTACTTCTGCAACACGAAGTCGTAGGTGAATCGGTCAGCCCATGCA 68123 || || ||||| || | || || || | || | ||| || |||| ||| ||| Sbjct 240 TTAAAAGCTTTAGTGTATTTGTCTAAAACAAATTGATATGAGAAACGATCAGGCCACGCA 299 Query 68124 CCCTTGAACTCTTCCCGTGAGCACGGGAATCTCTCGCACACAGGGTAGACGTTGACCTTC 68183 || | || |||| | | || || || | | ||||||||||| ||||| || | Sbjct 300 CCTCTAAAGTCTTTCTCTTCACAAGGAAAATTAGCACACACAGGGTACACGTTAACTGCC 359 Query 68184 CAGGCACCAGACTCCACTGCTTTGTACAGTGGATCCTTCGCGTTGAACGGTGTACCCGAC 68243 || ||||||||||| ||||||||||| | |||||| || ||| || || ||||| ||| Sbjct 360 CAAGCACCAGACTCAACTGCTTTGTATAATGGATCACGCGAGTTAAAGGGAGTACCTGAC 419 Query 68244 CAGATGATCAT-GTTCTTCTTCGGGTGCAGTGCGTAGTCCACTGCCTTGTACACCGTGTC 68302 ||||| | | | | | | || |||| | ||||||||| | ||||||||||| || || Sbjct 420 CAGATTACCTTAGAGCGTATT-GGGTCTAATGCGTAGTCAATAGCCTTGTACACTGTATC 478 Query 68303 TTCGATGGCTGCGATGACGGTTGGTGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAG 68362 ||| | || | || || || | ||| | |||||||| ||||| | |||||||| || Sbjct 479 TTCTACAGCAGAAATAACTGTAGCTGACCTCGCATCTTCATCCGATATTAAGTCATCTAG 538 Query 68363 TACCGCAAGCTGCGGACGCTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACC 68422 ||| |||||| ||||| ||||||||| || |||||||| ||||| ||||| || || Sbjct 539 TACAGCAAGCACTGGACGAACACCCATCTCTTTAGCACCACGTACACCGGTCTTTGCGCC 598 Query 68423 GTAGCCCTTGACGATGAAGACCTTCCCGTCCAGGTTCGTGAACTTCCAGCGGATATCAGT 68482 || || || ||||| || || || || | ||| | || | |||||| |||||||| Sbjct 599 ATAACCTTTTACGATAAATCGGTTACCATCAATGTTATTAAATTCCCAGCGTATATCAGT 658 Query 68483 GAAGTTGGTTTGAGGGATGTACTTCTTCAGGAACTCAGAGTTCTCCCAGCGGAACTCCAG 68542 ||| | || | ||| | ||||| | || || ||||| ||||| |||||||||| Sbjct 659 GAACCTAGTGT-AGGTACATACTTAAGTAAAAATTCTGAGTTTTCCCAACGGAACTCCAA 717 Query 68543 GTTCTTACGCATGTTCTTCACACCGTTGTCGATGGAGTCCGACACGTACAGAGCAAGGTC 68602 |||||||||||||||||| |||||||| || || || || || |||||||| | | Sbjct 718 GTTCTTACGCATGTTCTTAACACCGTTCTCTATACTATCTGAAACATACAGAGCCAAGGG 777 Query 68603 TACCTTACCGAAACCAGGAAGCTCACCGTACAGTGCAATGTACA 68646 || ||||| || || || | |||||||| || ||||||| Sbjct 778 AACTTTACCAAACCCGGGGATGTCACCGTAACAAGCTATGTACA 821 >seq488807 Length=774 Score = 205 bits (226), Expect = 4e-48 Identities = 314/444 (71%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 67860 GCCCAGACACTGATCACACTGAAGTCACTCGCCTTCTTCGCAGAGGTAGCGAAGTCAGTG 67919 ||||| ||| || || || ||||| || |||| || ||||||| || || || || Sbjct 440 GCCCATACAGATATTACGCTAAAGTCGCTAGCCTCTTTTTCAGAGGTTGCAAAATCCGTA 381 Query 67920 GTGATGTAGAAGTTGTACCGCTTCTTG----TTGTCCAGTACGTTGCGCCGCATGTACCA 67975 |||||||||||||||||| || |||| || ||| | || || || |||||| Sbjct 380 GTGATGTAGAAGTTGTAC-GCGTCTTTACTCTTAAGAAGTGCATTACGT-GC--GTACCA 325 Query 67976 AGCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGACATGATCTGGAGCATAAGCTC 68035 | | ||||| ||| | || | | |||||| || ||||| || ||||| | ||| Sbjct 324 ATTAATCTCACTATCTTTAATTAATCTGTCTTCTTCTGACATAATTCTTAGCATCAACTC 265 Query 68036 TTGGTTGAATGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAA 68095 |||||| || | || | ||| ||||| || || |||||| | || || || | Sbjct 264 TTGGTTAAAAGAATCCACCTTACCTGCTTTAACAGCTTTGGTGTATTGCTTCATTACATA 205 Query 68096 GTCGTAGGTGAATCGGTCAGCCCATGCACCCTTGAACTCTTCCCGTGAGCACGGGAATCT 68155 ||| || ||||| || |||| ||||| || ||||||||||| | | || || ||| | Sbjct 204 GTCATACGTGAAGCGATCAGGCCATGAGCCTTTGAACTCTTCTCTCGTACAAGGAAATTT 145 Query 68156 CTCGCACACAGGGTAGACGTTGACCTTCCAGGCACCAGACTCCACTGCTTTGTACAGTGG 68215 ||| ||||||||||| || || || | ||| || || ||||| ||||||||||||| ||| Sbjct 144 CTCACACACAGGGTACACATTTACGTACCAAGCTCCTGACTCAACTGCTTTGTACAATGG 85 Query 68216 ATCCTTCGCGTTGAACGGTGTACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGC 68275 || ||||| ||||| ||||| |||||||| || | ||| | || |||| ||| Sbjct 84 GTCACGGGCGTTAAACGGAGTACCTGACCAGATTATTTTAGACTTGGTAGGATGCAATGC 25 Query 68276 GTAGTCCACTGCCTTGTACACCGT 68299 ||| |||||||| || || || || Sbjct 24 GTAATCCACTGCTTTATAAACTGT 1 >seq255804 Length=3791 Score = 187 bits (206), Expect = 1e-42 Identities = 476/719 (66%), Gaps = 13/719 (2%) Strand=Plus/Plus Query 68116 CCCATGCACCCTTGAACTCTTCCCGTGAGCACGGGAATCTCTCGCACACAGGGTAGACGT 68175 ||||||| || || |||||||| | | || || || |||| || | ||| || || Sbjct 2268 CCCATGCTCCTTTAAACTCTTCTCTAGTACAAGGAAACTTCTCACATATAGGATATACAC 2327 Query 68176 TGACCTTCCAGGCACCAGACTCCACTGCTTTGTACAGTGGATCCTTCGCGTTGAACGGTG 68235 | || | ||| |||||||| |||| |||| |||| ||||| || || || || || | Sbjct 2328 TTACATCCCATGCACCAGATTCCATAGCTTCATACAAAGGATCATTAGCATTAAAGGGAG 2387 Query 68236 TACCCGACCAGATGATCATGTTCTTCTTCGGGTGCAGTGCGTAGTCCACTGCCTTGTACA 68295 |||| ||| || || | |||||| ||||| ||||| || | | |||| | Sbjct 2388 TACCAAGCCATATAGTCTTAGACTTCTTAGGGTGAAGTGCATACTTAATAGCCTGACCTA 2447 Query 68296 CCGTGTCTTCGATGGCTGCGATGACGGTTGGTGAGCGAGCATCTTCGTCCGAAACCAAGT 68355 | ||||||| || ||| || || || ||||| || | || || | ||| |||| Sbjct 2448 CTGTGTCTTTAATAGCTTGAATAACTGTAGGTGAACGTGAGTCATCATTACTAACTAAGT 2507 Query 68356 CATCCAGTACCGCAAGCTGCGGACGCTTACCCATCTCCTTCGCACCACGGACACCAGTCT 68415 |||| || | || | ||| || || |||||||||||||| ||||||| | ||| |||| Sbjct 2508 CATCTAGGATAGCCATCTGTGGGCGTGTACCCATCTCCTTCACACCACGAATACCTGTCT 2567 Query 68416 TGGCACCGTAGCCCTTGACGATGAAGACCTTCCCGTCCAGGTTCGTGAACTTCCAGCGGA 68475 ||||||| || ||||| || | ||| | || | | ||| | |||| ||| | | Sbjct 2568 TGGCACCATACCCCTTTACTACGAATTTAGTACCATTAATATTCTTAAACTCCCACCTAA 2627 Query 68476 TATCAGTGAAGTT------GGTTTGAGGGATGTACTTCTTCAGGAACTCAGAGTTCTCCC 68529 |||| |||| || || ||| | ||||||| | ||||||| |||||| Sbjct 2628 TATCTGTGAGCTTTAATCCTTCTTTAGGTAGATACTTCTGTAAGAACTCACTACTCTCCC 2687 Query 68530 AGCGGAACTCCAGGTTCTTACGCATGTTCTTCACACCGTTGTCGATGGAGTCCGACACGT 68589 | || |||| | |||||| | ||| ||| | |||||| || || || || || | Sbjct 2688 AACGAGACTCTAAGTTCTTTCTCATTGACTTAATACCGTTATCAATACTATCTGATACAT 2747 Query 68590 ACAGAGCAAGGTCTACCTTACCGAAACCAGGAAGCTCACCGTACAGTGC-AATGTACAGG 68648 |||| | | | |||||||| || || | ||||||| || || || | | Sbjct 2748 ACAGCACTAATTTAACCTTACCAAAGGACGGCATTCTGCCGTACACCGCTAAGATATAAG 2807 Query 68649 AACAGGTACTCACCCATCACGGTAGTCTTGGCCGCACCACGGAACACCATGTTGGCGATC 68708 | ||||||||| |||| | |||||||| | |||||||| || | |||||| || | Sbjct 2808 ATAAGGTACTCAGCCATTAGTGTAGTCTTACCTGCACCACGAAAGATCATGTTAGC--TA 2865 Query 68709 CGAGTCT--GGCCAGAGCCAATCTGGTCAAGCATCCGTAGGTGAAGCACTGGTGTCTTGT 68766 || ||| ||| | | || || | |||| || ||||| || |||| || Sbjct 2866 CGTTTCTTAATCCACCATCTAACTTATCTAACATCTTTAAGTGAATAACAGGTGATACGT 2925 Query 68767 TCTCTTCCCCTTCGTTACCGTTGACCATCTTGATGAA-GTCAACGAACTGCAAGGCAAA 68824 |||| || || || ||| || || | ||| || || ||||| ||||| ||| ||||| Sbjct 2926 TCTCCTCACCCTCACCACCATTAACTAGCTTAATAAACGTCAA-GAACTCCAATGCAAA 2983 >seq523594 Length=514 Score = 91.5 bits (100), Expect = 7e-14 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 34275 ATCCAAAAGCGATCTACGTTGAAGCCAGCTTCGACAGTGCGTCCGTCATTGTACACACCG 34334 ||||| ||||| || |||| ||| || ||||| |||||||| || || |||||||||||| Sbjct 512 ATCCAGAAGCGGTCCACGTCGAAACCGGCTTCTACAGTGCGACCATCGTTGTACACACCG 453 Query 34335 AAGCCACCAACCAAACCATTCAC 34357 || ||||||| ||||||||| || Sbjct 452 AAACCACCAATCAAACCATTGAC 430 >seq469180 Length=838 Score = 82.4 bits (90), Expect = 3e-11 Identities = 255/391 (65%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 64114 AGCTTCAAATCGAAGTTGCCAGCAAGGTCATCCCTGCGGATGTCCACGAAGTGCTCATTC 64173 ||||| | ||| ||||| |||||||||||||| | || ||||| | || | Sbjct 404 AGCTTAACATCAAAGTTACCAGCAAGGTCATCACGTTTAATAGTAACGAACTCTTCGTCA 345 Query 64174 GTGATCCTCACCACTTCCACATCGTCCAGGAACTCAGCGTTCATGGCTATGATCTTCCGC 64233 || || | | ||||| | || || | |||| |||||||| ||| ||||| || Sbjct 344 GTAATTCGTATAACTTCTTCTTCTTCTAAGAACAAGGCGTTCATACTTATAATCTTACGG 285 Query 64234 CCGATCTCGATGATGCCAGCCGAGAGACGGCGAAGGATTCCAAGCTCACGCTTCGATGCA 64293 || ||||| ||||| || | | || | ||| || | |||||| || || ||| Sbjct 284 CCAATCTCTTCAATGCCTGCACCTAT-CTACGTAAGATACCTATCTCACGTTTAGAAGCA 226 Query 64294 GCATCCAATGCACCACGTACAGCAGTAGCGGTGTCACCGAGTGCAGCACCAGAGATGCCA 64353 | |||| ||||||||| || | | | || ||||| | |||| ||||| | ||| Sbjct 225 GAGTCCATTGCACCACGAGCATTACCAACAGTATCACCAAATGCATCACCACTTACACCA 166 Query 64354 GCGTTGAAAGCCTTCACACCAGTCATGGATTCAGCTTCTGCCTGTTGCAGGTTGATCATG 64413 | | || || || | ||| || | ||||||||||| ||||||| | | ||| Sbjct 165 GTACTAAATGCTTTGATACCTGTTAATGATTCAGCTTCATTGTGTTGCATACTAAGCAT- 107 Query 64414 TAC-TGAGCGGACTGCGGGATCTCTGGGAAGGTGTGCATGTGCACAGCAGCCCGTGGGTC 64472 ||| |||| ||||| | | ||| || | | ||||||| | || | ||| || Sbjct 106 TACAGGAGCTGACTGTGAAAGCTCAGGATACTTATGCATGTAAAATGCTTTACTTGGATC 47 Query 64473 TGCACCTGGGTTGAACTCGTAGTTCTCACCC 64503 |||| |||| ||||||||| |||||| Sbjct 46 AACACCACCGTTGTACTCGTAGTCATCACCC 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 228889415824358