Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq4536 95.1 1e-14 seq596 95.1 1e-14 seq4534 91.5 1e-13 seq4535 86.0 6e-12 >seq4536 Length=1284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 || || ||||| || | || | ||| | ||| |||||||| ||| || | | ||||| Sbjct 639 AGTATCTGGGGCCCAACTTGTGCTGGTGTTGATCGCATTGTTGAGCAGTTTTATCTGCCT 580 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 || || || |||||||||||||| | |||||||||||||| || |||| | ||| | Sbjct 579 GACCTGCAGGTGGGCGACTGGCTGGTCTTTGAAAACATGGGTGCCTACACCGTGGCTGCC 520 Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 || || ||||| || || |||| || || | | |||||||| || || Sbjct 519 TCCTCCACCTTCAATGGTTTCCAAAGACCTGGCATTCACTATGTCATGTC 470 >seq596 Length=12188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 || || ||||| || | || ||||| | ||| |||||||| ||| |||| | ||||| Sbjct 9412 AGTATCTGGGGCCCAACTTGTGATGGTCTTGATCGCATTGTTGAGCAGTGTTACCTGCCT 9471 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 || | || || ||||||||||| | |||||||||||||| || |||| | | | | Sbjct 9472 GACATGCAGGTTGGCGACTGGCTGGTCTTTGAAAACATGGGTGCCTACACCGTAGCTGCC 9531 Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294 || || ||||| || || |||| || || || |||||||| ||||| Sbjct 9532 TCCTCCACCTTCAATGGTTTCCAAAGACCTGATCTTCACTATGTCATTTC 9581 >seq4534 Length=2006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 || || ||||| || | || | ||| | ||| |||||||| ||| || | | ||||| Sbjct 626 AGTATCTGGGGCCCAACTTGTGCTGGTGTTGATCGCATTGTTGAGCAGTTTTACCTGCCT 567 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 || || || |||||||||||||| | |||||||||||||| || |||| | ||| | Sbjct 566 GACCTGCAGGTGGGCGACTGGCTGGTCTTTGAAAACATGGGTGCCTACACCGTGGCTGCC 507 Query 21245 TCTTCAACCTTTAACGGCTTCCCAA 21269 || || ||||| || || |||| || Sbjct 506 TCCTCCACCTTCAATGGTTTCCAAA 482 >seq4535 Length=5155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21155 GATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTT 21214 ||| |||||||| ||| |||| | ||||| || | || || ||||||||||| | ||| Sbjct 3641 GATCGCATTGTTGAGCAGTGTTACCTGCCTGACATGCAGGTTGGCGACTGGCTGGTCTTT 3582 Query 21215 GAAAACATGGGCGCTTACAGCTTGGTCAGCTCTTCAACCTTTAACGGCTTCCCAAAGCCA 21274 ||||||||||| || |||| | || ||| || ||||| || || |||| || || Sbjct 3581 GAAAACATGGGTGCCTACACCGTGACTGCCTCCTCCACCTTCAATGGTTTCCAAAGACCT 3522 Query 21275 GAAAAGCACTATGTTATTTC 21294 | | |||||||| ||||| Sbjct 3521 GGCATTCACTATGTCATTTC 3502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460500673251360