Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq4536 95.1 1e-14
seq596 95.1 1e-14
seq4534 91.5 1e-13
seq4535 86.0 6e-12
>seq4536
Length=1284
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184
|| || ||||| || | || | ||| | ||| |||||||| ||| || | | |||||
Sbjct 639 AGTATCTGGGGCCCAACTTGTGCTGGTGTTGATCGCATTGTTGAGCAGTTTTATCTGCCT 580
Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244
|| || || |||||||||||||| | |||||||||||||| || |||| | ||| |
Sbjct 579 GACCTGCAGGTGGGCGACTGGCTGGTCTTTGAAAACATGGGTGCCTACACCGTGGCTGCC 520
Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294
|| || ||||| || || |||| || || | | |||||||| || ||
Sbjct 519 TCCTCCACCTTCAATGGTTTCCAAAGACCTGGCATTCACTATGTCATGTC 470
>seq596
Length=12188
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184
|| || ||||| || | || ||||| | ||| |||||||| ||| |||| | |||||
Sbjct 9412 AGTATCTGGGGCCCAACTTGTGATGGTCTTGATCGCATTGTTGAGCAGTGTTACCTGCCT 9471
Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244
|| | || || ||||||||||| | |||||||||||||| || |||| | | | |
Sbjct 9472 GACATGCAGGTTGGCGACTGGCTGGTCTTTGAAAACATGGGTGCCTACACCGTAGCTGCC 9531
Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTC 21294
|| || ||||| || || |||| || || || |||||||| |||||
Sbjct 9532 TCCTCCACCTTCAATGGTTTCCAAAGACCTGATCTTCACTATGTCATTTC 9581
>seq4534
Length=2006
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184
|| || ||||| || | || | ||| | ||| |||||||| ||| || | | |||||
Sbjct 626 AGTATCTGGGGCCCAACTTGTGCTGGTGTTGATCGCATTGTTGAGCAGTTTTACCTGCCT 567
Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244
|| || || |||||||||||||| | |||||||||||||| || |||| | ||| |
Sbjct 566 GACCTGCAGGTGGGCGACTGGCTGGTCTTTGAAAACATGGGTGCCTACACCGTGGCTGCC 507
Query 21245 TCTTCAACCTTTAACGGCTTCCCAA 21269
|| || ||||| || || |||| ||
Sbjct 506 TCCTCCACCTTCAATGGTTTCCAAA 482
>seq4535
Length=5155
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 21155 GATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTT 21214
||| |||||||| ||| |||| | ||||| || | || || ||||||||||| | |||
Sbjct 3641 GATCGCATTGTTGAGCAGTGTTACCTGCCTGACATGCAGGTTGGCGACTGGCTGGTCTTT 3582
Query 21215 GAAAACATGGGCGCTTACAGCTTGGTCAGCTCTTCAACCTTTAACGGCTTCCCAAAGCCA 21274
||||||||||| || |||| | || ||| || ||||| || || |||| || ||
Sbjct 3581 GAAAACATGGGTGCCTACACCGTGACTGCCTCCTCCACCTTCAATGGTTTCCAAAGACCT 3522
Query 21275 GAAAAGCACTATGTTATTTC 21294
| | |||||||| |||||
Sbjct 3521 GGCATTCACTATGTCATTTC 3502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460500673251360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |