Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024362.1 Length=40472 Score E Sequences producing significant alignments: (Bits) Value seq512931 374 2e-99 seq524349 174 4e-39 seq521066 158 3e-34 seq500082 152 1e-32 >seq512931 Length=538 Score = 374 bits (414), Expect = 2e-99 Identities = 403/530 (76%), Gaps = 20/530 (4%) Strand=Plus/Plus Query 38361 CCTGACCACTCGCCCTCTGTGAAGTCTGTAGGTATCACCGGTCAGT-TGACTGGTAGCCG 38419 ||||||||| ||||| |||||||| || ||| | || || | || ||||||||||||| Sbjct 10 CCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGG-CGGTATGACTGGTAGCCG 68 Query 38420 TGCTGACATCCTCATTGCGGACGACGTTGAGGTTCCCAACAACTCTGCCACTCAGACCGC 38479 ||||||||||||||||||||| ||||||||||| ||| |||||||| ||| ||| |||| Sbjct 69 TGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACACAGTCCGC 128 Query 38480 CCGAGATCACCTCGGAGAACTGGTGAAGGAGTTCGATGCGATCCTGAAGCCGGGTGGTAC 38539 | |||||||| || || ||||| ||||| |||||||||||||||||||| | ||||| Sbjct 129 AAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCTGACGGTAC 188 Query 38540 GATCATCTATCTGGGCACCCCTCAGACCGAGATGACCCTCTACCGCGAGCTGGAAGGCCG 38599 ||||||||| |||| ||||| |||||||| |||||||||||| | || || || | ||| Sbjct 189 GATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTTGAGGACCG 248 Query 38600 TGGATACGTCACAACGATCTGGCCTGCGAGATACCCTAAAGACCAAGCTGACTGGGACTC 38659 || ||| || |||||||||||||| |||||||| || |||||| || || Sbjct 249 CGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGACCTTGAGTC 308 Query 38660 CTAC-----GGCCCACGGCTGGCTCCTATG-CTGG--------CTGCT----GAGCTACA 38701 |||| ||| | ||| || | | | |||| |||| ||||| | Sbjct 309 CTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAGGAGCTGGA 368 Query 38702 GGCAGATGGTTCCCTGTTCTGGGCACCTACTGACGAGGTTCGCTTCGATGACAAGGACCT 38761 | || | ||||||||| ||||| ||| |||| |||||||| | ||||| Sbjct 369 AGACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGATGAAGACCT 428 Query 38762 GCGTGAGCGGGAACTGTCCTACGGCAAGGGTGGCTTCGCACTTCAGTTCATGCTCAACCC 38821 ||||||||| ||||| || || ||||||||||||||||| || ||||||||||||||||| Sbjct 429 GCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATGCTCAACCC 488 Query 38822 GAACCTCTCCGACATGGAGAAGTACCCTCTCAAGCTGCGTGACTTCATCG 38871 |||||| |||||| ||||||||||| | ||||||||||| | |||| Sbjct 489 GAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538 >seq524349 Length=315 Score = 174 bits (192), Expect = 4e-39 Identities = 198/266 (74%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 13717 TGGAATGCCCAGCCGTTCGTGCCCGATGGGGTCGTCTCTGCGAAGTCCCTAAAGGCCCGC 13776 ||||| |||||| || ||| || ||||| || ||||| ||||||| ||| |||| |||| Sbjct 10 TGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTTAAGGGCCGC 69 Query 13777 TTGAAGGAGAAGAAGGTGATCCCTTCGCTCCCTCTGGTGGCCCCTCACGAACTCAAGAAG 13836 | || || |||||||| ||| ||||| | ||| |||||| |||||||| || Sbjct 70 ATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAGCTGTCCCGC 129 Query 13837 ATGACCAAGGACTGCCGTGGTGGTGAGGTGATCCTCGTGACCTCTGGCAGTGGCTCGGGC 13896 ||||||||| || ||| | || || || || || || ||||| ||| ||||||||| Sbjct 130 ATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTCCGGCTCGGGC 189 Query 13897 AAGTCCACCTTCGTGCGTCAGAACGTCTACAACCTGTTCCACAACGAGTCCATTCCATGT 13956 |||||||| ||||| || |||||| ||||||| | ||||| | | | | || || Sbjct 190 AAGTCCACGTTCGTCCGACAGAACACCTACAACGTCTTCCATGAGGCGACGATCCCGGTG 249 Query 13957 GGCGTTGCCATGCTGGAGGAAGCCGT 13982 |||||||| ||||| |||||| |||| Sbjct 250 GGCGTTGCGATGCTTGAGGAATCCGT 275 >seq521066 Length=280 Score = 158 bits (174), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 20825 CATGGAAGCCAACAGCTACCGAGTGACGCTCTTTGAGTTGATCCGTCAGTTGGCCCTTGC 20884 ||||||||||||||| ||||| ||| | ||| |||| |||||||||| | || Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60 Query 20885 AGGCACCGCTCTGATCTACCTACCACCACCTGACGCATCGTCCAATTCGTACAACCCGAT 20944 || | | ||| | ||||| || || ||||| | ||| || | | | ||| || Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGG---AGCCCTAT 117 Query 20945 GAAGCTCTACACGCTCCACAACCATGTGGTCCAGCGTGATGCCTTCGGGAACGTCTTGCA 21004 ||||||||||||||| |||||||| || ||||| || || |||||||||||||| | || Sbjct 118 GAAGCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACA 177 Query 21005 GATTGTGACGCTCGACAAGGTGGCCTATGCGGCACTCCCAGAGGACGTTCG 21055 ||| || ||||||||||||||||||| |||||| || || || ||||| || Sbjct 178 GATCGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCG 228 >seq500082 Length=313 Score = 152 bits (168), Expect = 1e-32 Identities = 204/284 (72%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 5657 TGGCTGATGATCCACGGTGCGAACTGTGCCGGGGTCGATAAGGTTGACTTCAGCCAGCGC 5716 ||||| ||||| ||||| || ||| ||| |||||||||||||| ||| || ||| Sbjct 297 TGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTCCCTTTCGATCAACGC 238 Query 5717 AAGCAGTGGATCAAGGACAACGAGGAAATGATTCTTCGCTGTGCCCACGACCCGCTCATC 5776 ||||| ||| | ||||| || | || || || || || | |||||||||| Sbjct 237 AAGCAATGGGTTCGTGACAATGAATCGACTATCCTCCGATGCGCTGAAGACCCGCTCACT 178 Query 5777 AACACCGACTGGATGGACATGGATTCGCCCTTCTGCTTCTTGGCGTTCTGCTTCGAGTGG 5836 ||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 177 CACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCGTTCTGCTTCGAGTGG 118 Query 5837 CAAGGTGTGAAGCTCCACGGGGAAGCCCATGTGTCTGCCCTGCCGATTGCCTTCGACGGT 5896 ||||| | | | || | || || || || || || || || || ||||| Sbjct 117 GCCGGTGTCGTTCGCGATGGAGCTGCACACCGATCCGCTCTACCAATCGCTTTTGACGGA 58 Query 5897 TCTTGCTCGGGCATTCAGCACTTCTCTGCGATGCTCCGTGATGA 5940 || ||||| || ||||| || ||||| |||||||| || || Sbjct 57 AGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACGA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128581370381016