Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq44246 298 5e-76 seq152719 120 3e-22 seq152718 105 6e-18 seq6427 104 2e-17 seq103378 100 3e-16 seq59939 96.9 3e-15 seq59938 93.3 4e-14 >seq44246 Length=4029 Score = 298 bits (330), Expect = 5e-76 Identities = 992/1525 (65%), Gaps = 35/1525 (2%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| | || || | ||| ||||| || | || || || || Sbjct 1785 TCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGG 1726 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | || | |||||||||||||||| ||||| ||||| | Sbjct 1725 TGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 1666 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| || | |||||| ||| | || ||| | || || || Sbjct 1665 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCT 1606 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAG--CGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| | ||||||||| || ||| | || ||| | ||||||||||||||| Sbjct 1605 CCTTCAGCAGCTTCCAGTCCCACAGGTCGGTG--GGCGTCTTCTCCCACATGTCGTACTG 1548 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 || ||||| ||| ||||| ||| ||||||| | ||| || || || | || || Sbjct 1547 GAGGATGCCCTTGCTGACGGGGGAGCC-TCGTACGTGTCGTAGGGGCCCAGCTCGGCGGC 1489 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 |||||||||||| ||||| || ||| ||||||| || ||||| || || |||| || Sbjct 1488 CAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAG 1429 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| ||| |||||| | || ||||| | | | || |||||||| ||||| Sbjct 1428 CAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCC 1369 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCG 148713 ||| ||||| | || || |||| ||| ||||||| | || ||| | | || Sbjct 1368 CTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGA-CTGATCGGCCTCGGGCACCG 1310 Query 148714 GATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-----AAT 148768 | ||| ||| || |||||||||| || || ||| | ||| || || | | Sbjct 1309 GGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACT 1250 Query 148769 TCTG-CGCAGCAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGATAG 148827 | | | || |||||| || | ||| | ||| ||| | ||||| | Sbjct 1249 CCAGTTTCTTGAAGTCAAAAGTCCGCTCGGGGGTGACG-TACAT--GTTGAGAGCGATGG 1193 Query 148828 AGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCT---GTACTCTACGATCTCGGCGC 148884 |||| ||||| ||||| || |||||| | | || ||| || ||||| || | || Sbjct 1192 AGGCCAGATTACACACAGCGACCTCATC---GCCACTGGAGTATTCAACGATTTCCGTGC 1136 Query 148885 ACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGT 148944 | || |||||||| ||||| |||| ||||| || |||||||| |||||||| |||| Sbjct 1135 AGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1076 Query 148945 CCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCA 149004 | ||||||||||||||||| ||| | ||| ||| | || | ||| | || Sbjct 1075 CTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACA 1016 Query 149005 GGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 | ||| || ||| ||| | || |||||| |||| ||| || || ||| Sbjct 1015 CCTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCT 956 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 ||| ||| |||| || |||| ||||| || ||||||| || | || ||||| || | Sbjct 955 TCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAG 896 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 |||| | || | ||| | |||||| ||||| ||||| | ||| | |||| | Sbjct 895 ACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGA 836 Query 149185 TGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCT 149242 ||| || | || | ||| || || ||| |||| ||| | || | | Sbjct 835 AGAGATCTCTGGCTCTCTGC--TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTC 778 Query 149243 GAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCC 149299 ||| | ||| |||||||||||| | ||||| |||| ||||| ||| ||||| Sbjct 777 GAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTGCC 718 Query 149300 GCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACT 149359 |||||||||||| | ||| | ||||||| | || | | ||| || | | || | Sbjct 717 GCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCGTT 658 Query 149360 GGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGAC 149419 || ||||||| || | ||| || ||| | ||| | | ||| || Sbjct 657 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCTGACGGCCAC 598 Query 149420 GCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGC 149478 ||||| || || |||| |||| |||||| || || | ||||| |||||||| Sbjct 597 ACCGATTCCTCCTGCCG-ACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAGATGC 539 Query 149479 CCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCG 149538 |||||||||||||| ||||||||| ||||| ||||| | | | || || | Sbjct 538 CCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGGTTGG 479 Query 149539 TGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGT 149598 | || || ||| | |||||| |||||| || || | |||| | || | || Sbjct 478 TTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGGTTGT 419 Query 149599 ACGACTCGAGCACGCGGTCCATGTCATCGCC--ATGGATGCCTATGGCGACGCGCATCAG 149656 | | ||||| || ||| || || || | ||||| || | | || | ||| || Sbjct 418 AGGTCTCGATGGCGGCGTCGATATC--CGTCTTGTGGATTCCGACCGACACCCTCATGAG 361 Query 149657 CATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAG 149716 ||| |||||||| ||||||||||||||| || || |||| |||| || || Sbjct 360 CATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCAGCAGGTAGGATCGCTCCAG 301 Query 149717 TGTCTTGTAGCCAAAGTACTTGTAG 149741 |||||| |||| ||| | |||||| Sbjct 300 CGTCTTGAAGCCGAAGAAGTTGTAG 276 >seq152719 Length=2073 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| |||||||| |||||||| || || ||||| ||| ||| ||| | || || |||| Sbjct 523 ATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCA-TCTTCCAGCT 581 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| || ||||||||||| ||||| || ||||| Sbjct 582 GCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCT 641 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | ||||| |||||| |||| || || || | |||| || || || | Sbjct 642 TAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGTCTTACCAG 701 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 702 TCAGGGTCTTCACAAAGATCTGCAT 726 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||||||||| || ||||| ||| | ||| ||| || ||||| Sbjct 67 ATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTG 126 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || ||||||||||| ||||| || |||||| Sbjct 127 CTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTT 186 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||||| |||||| |||| || || || | |||| || || || || Sbjct 187 AGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTACCAGT 246 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 247 CAGGGTCTTCACAAAGATCTGCAT 270 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| ||| |||||||||||| || ||||| ||| | ||| ||| || ||||| Sbjct 295 ATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTG 354 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | ||||||| ||||||||| ||||||||||||||||| || |||||| Sbjct 355 CTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTT 414 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||||| |||||| |||| || || | | |||| || ||||| || Sbjct 415 AGCTTTGACATTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGT 474 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || ||||| || Sbjct 475 GAGGGTCTTCACAAAGATCTGAAT 498 >seq152718 Length=3078 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || |||| ||| | ||| ||| | || || |||| Sbjct 2170 ATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCA-TCTTCCAGCT 2228 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| | ||| || | ||||||||||||||| || |||| Sbjct 2229 GCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCCTTATCCTGAATCT 2288 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | ||||| |||||| |||| || || || | |||| ||| || || | Sbjct 2289 TAACTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGTCTTACCAG 2348 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 2349 TCAGGGTCTTCACAAAGATCTGCAT 2373 >seq6427 Length=3314 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 3131 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCT 3189 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| || || || |||||||||||||| ||||| Sbjct 3190 GCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCT 3249 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | |||||| ||||||| || || | ||||| ||| ||||| | Sbjct 3250 TGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCCG 3309 Query 133636 TCAG 133639 | || Sbjct 3310 TGAG 3313 >seq103378 Length=1867 Score = 100 bits (110), Expect = 3e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | ||||||||||||| ||||||| |||| |||| || | Sbjct 1784 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 1725 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| | |||||| ||||||||||| ||||||||||| Sbjct 1724 TGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1685 >seq59939 Length=800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || || | || |||| |||||| || || || |||||||||||| Sbjct 11 TCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTG 70 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | ||||| || |||| ||||| | Sbjct 71 TCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTGATG 130 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| || || || || || || ||||||||| Sbjct 131 GTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 166 >seq59938 Length=2926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||| || || || |||||||||||||| |||| Sbjct 2791 TGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATC 2850 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| |||||| ||||||| || || | ||||| ||| ||||| Sbjct 2851 TTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCA 2910 Query 133635 GTCAGAGTTTTTACGA 133650 || || || || |||| Sbjct 2911 GTGAGGGTCTTGACGA 2926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480245317534480