Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq388653 181 2e-40 seq496362 111 4e-19 >seq388653 Length=382 Score = 181 bits (200), Expect = 2e-40 Identities = 227/311 (73%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 110830 AAGAACAAA---GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGA 110886 ||||| ||| | ||| | |||||||| | ||| ||||||| ||| ||||||||||||| Sbjct 8 AAGAAGAAATGCGTGCAAGAGATTTATTCTTTGCCATGTGGACTTCTGATTTATTCATGA 67 Query 110887 AACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTAT 110946 ||||||| |||||| | || | ||| || | ||||||||| | | |||||| | | Sbjct 68 AACGTGTACAAGAAGACGGAAACTGGACTTTAATGTGTCCTAACGAATGTCCTGGATTGT 127 Query 110947 CTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT 111006 ||||| ||||| |||||||||||| | || |||| || || |||| || || Sbjct 128 ACGATGTTTATGGTGAAGAGTTTGAAGCATTATATGAAAGCTACGAGAAAGCTGGAAAAG 187 Query 111007 TTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAA 111066 | | ||| |||| ||| || ||| | ||| ||||| || ||||| ||| | || | Sbjct 188 GTAGAAAAACAATTAAAGCACATGAATTGTGGGAGAAAATTCTAGAATCTCAAATCGAGA 247 Query 111067 CTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATT 111126 |||||||||| ||||| || ||||||||| || || ||||| || |||| ||||| Sbjct 248 CTGGAACTCCGTATATGTTATATAAAGATGCGGCAAACCGTAAATCAAACCAAAAGAATT 307 Query 111127 TAGGAACAATT 111137 ||||||| ||| Sbjct 308 TAGGAACTATT 318 >seq496362 Length=882 Score = 111 bits (122), Expect = 4e-19 Identities = 366/565 (65%), Gaps = 27/565 (5%) Strand=Plus/Plus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATC--TGTTGCGGCCTTCT 131492 ||||| || || || || ||| ||| || | ||||| ||| || ||| |||| Sbjct 62 TTTCCGATCAAGCACCAAGATATTTGGGAATTTTATAA---ATCCATGGAGCGAGTTTCT 118 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGA 131552 |||||| ||||| || ||| || | ||||| | | || ||| | || | |||| Sbjct 119 GGACTGCCGAAGAAATTGATTTGTCACAAGATTTAAACGACTGGAATAAC---AAGTTGA 175 Query 131553 AT------GAAAAAGATTTTGTTTCCAAAG---TTCTTGCATTCTTCGCCGGAAGTGATG 131603 || ||| || | ||| | |||| || | ||||| ||||||| || | Sbjct 176 ATAAAGACGAACAATACTTTAT---CAAACACATTTTAGCATTTTTCGCCGCTTCAGACG 232 Query 131604 GCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAA 131663 | ||||| | ||||||||||| | || || | | ||| | | | |||||| | Sbjct 233 GAATTGTAAATGAAAATCTTGCTGAAAACTTTGTAAATGAAGTGCAATATGCTGAAGCGA 292 Query 131664 CAT-CGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTA 131722 || | ||||| || ||| | | ||| |||||| ||||| | |||||| || Sbjct 293 AATTCTTTCTATGGTTTCCAAATCATGATGGAAAATATTCACAGCGAAACGTATTCCTTG 352 Query 131723 TTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATGCTGTAAAT 131782 || || || | | ||| ||| | |||| || ||| | ||||| | || || | Sbjct 353 TTAATCGACACTTATGTAAAAGACGAAGCAGAGAAAGCCGATTTATTCAACGCATTAGAA 412 Query 131783 AAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCC 131842 |||||||| || ||||||||||| || ||||| ||| |||||||| ||||| Sbjct 413 GTTTTTCCTGCTATCAAAAAGAAAGCGGACTGGGCAATTCAATGGATT------GATTCA 466 Query 131843 GCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGT 131902 | | ||| | || | | |||||||| || ||||| || ||||| |||||| Sbjct 467 GATTCTTTCGCAGAGCGATTGATTGCTTTTGCAGCAGTGGAAGGAATTTTCTTCTCAGGT 526 Query 131903 GCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCC 131962 ||||| ||| | || || ||| | || || || || |||||||| ||| | |||| || Sbjct 527 GCTTTTTGTTCCATTTTCTGGTTGAAAAAACGAGGTTTGATGCCAGGATTGACATTCTCA 586 Query 131963 AATCAATTCATCTCGAGAGATGAAG 131987 || |||| || || | || |||| Sbjct 587 AACGAATTGATTTCTCGTGACGAAG 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178821996093422