Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_024794.1
Length=167318
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 179 4e-40
seq506238 136 4e-27
seq509673 123 3e-23
seq351952 111 2e-19
seq505215 93.3 4e-14
>seq449735
Length=3187
Score = 179 bits (198), Expect = 4e-40
Identities = 482/734 (66%), Gaps = 5/734 (1%)
Strand=Plus/Minus
Query 141567 TTAGTTGGAATAGCGATTTCACAACATAAGTTACTCTGACGAATTGGAGCTTTTTCACGA 141626
|||||||| | || ||||| ||||||| ||| || ||||| || || || | |
Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696
Query 141627 ATAAATGGAGTGTAGTTATTCGTGTTATCAACAAACTGTGGATAAATTCGAGCAGTGCCA 141686
|| || || ||| |||| || ||||| ||| ||||| ||| | || |
Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636
Query 141687 GAACGTTCAGTCATGAACAATTCAAAGAGTTCTAGTGCTTTGATTCTTTTCTTTCTGATT 141746
| |||||| | |||| | || ||||| | ||||| || | ||| || | |||
Sbjct 635 GCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACGAATT 576
Query 141747 GTTGGGTCTTTTTCAGCTTTCTCATAAAGCTCACGGAATTTATCTTGATCTTCAAAGAAT 141806
| | ||||| ||| ||| |||||||| | || | ||||| |||||||| |||
Sbjct 575 GATTCGTCTTGTTCGTATTTTACATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAAT 516
Query 141807 GAGTAATATAGTTCGCCTGACATTTCGTGAGGGCTAAATAAAGTAATATAATCATTTTTA 141866
| | || || ||||| || || |||||||| || ||||| || || | ||||
Sbjct 515 GCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTA 459
Query 141867 CCAAGGCGTTCCATCATAAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAATACGG 141926
| || ||| || | ||||| ||| | ||||| || | ||| || | |||
Sbjct 458 ATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGG 399
Query 141927 TTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 141986
|| ||||| || || ||||||||| || ||||| ||||| ||||||||||| |||||
Sbjct 398 TTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAA 339
Query 141987 ATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACT 142046
| ||| || || || || || ||||| || | ||| ||||| ||||| ||| ||
Sbjct 338 AGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACC 279
Query 142047 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCATACCG 142106
|| ||||| || || || | || |||||| ||| ||||| |||| || | |
Sbjct 278 GCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGA 219
Query 142107 ATCTTAGAACCTTCTGCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTTTAGAA 142166
|| | ||| |||||||| || |||| || || || || || |||| ||
Sbjct 218 ATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGAT 159
Query 142167 ATATATTCGATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142226
| |||| | ||||| | || || |||||| || | | || || ||
Sbjct 158 ACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCT 99
Query 142227 ATAACTACACAACTAG-AGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATTGGAGT 142285
|| | ||||| || || |||||||| || || |||||| |||||||||||||||| ||
Sbjct 98 ATTAATACAC-ACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGT 40
Query 142286 AGGCAATGAAACTT 142299
||| | ||||| ||
Sbjct 39 AGGTAGTGAAATTT 26
>seq506238
Length=275
Score = 136 bits (150), Expect = 4e-27
Identities = 134/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 61288 TCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGA 61347
|| ||||| ||||| | | ||||| |||||||||| || || | |||||||| ||
Sbjct 49 TCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGC 108
Query 61348 ACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCA 61407
||||| || || |||||||| || || | || ||||||||||| || || ||||| |||
Sbjct 109 ACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCA 168
Query 61408 TCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 61460
||||||| ||||||||||| | || || ||||| | ||||||||||||||
Sbjct 169 TCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221
>seq509673
Length=441
Score = 123 bits (136), Expect = 3e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 141890 ATTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATT 141949
||| | ||| | ||||| |||||||| || | |||||| || ||||| || ||||||
Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280
Query 141950 TTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGC 142009
|||||| || |||| ||| |||||||| ||||| | || ||| || || || ||
Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340
Query 142010 ACCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142069
|||||| || | || ||||| || || |||| || ||||||||||| |||| ||||
Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400
Query 142070 TGGAATAACACCTGTATG 142087
||| ||| ||| |||||
Sbjct 401 TGGGATACAACCCGTATG 418
>seq351952
Length=416
Score = 111 bits (122), Expect = 2e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 61278 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGA 61337
|||||| || | ||||||||||| | ||| || || ||| |||||| | ||| | ||
Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80
Query 61338 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61397
|||||| || ||||| || || |||||||| || || | || ||||| || || ||||
Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140
Query 61398 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61457
| | |||||| | ||||||| || || |||||||| | ||||||||||||
Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200
Query 61458 TTCAAT 61463
||||||
Sbjct 201 TTCAAT 206
>seq505215
Length=421
Score = 93.3 bits (102), Expect = 4e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 44933 ATGGAAACTGTTAGTGTACCAGCCTTTATCGGTAACATCTTTTACGCTTCCATATTTTTC 44992
|||||||||||| ||||| | ||||| || || |||| || || |||| | | ||
Sbjct 407 ATGGAAACTGTTTGTGTAATAACCTTTGTCAGTTACATTTTCAACTAATCCAAACTCTTT 348
Query 44993 TGTGTCGAGTTTACAGAAACGATAACACAAGTTTTCAGCAGGAGTAGAATATAAACTAAA 45052
||||| | ||| ||||||| ||| ||||||||| || |||| ||||||||||||
Sbjct 347 AGTGTCTAAACGACAAAAACGATCACATAAGTTTTCACTTGGTGTAGCATATAAACTAAA 288
Query 45053 AGCAAATCCAGTTCTTTCGGTCCACTGTTTA-AGATGAGCATTCATTTTAGTTAAAATTT 45111
|| |||||||| ||| | ||| || | | ||| ||| |||||| | | | |||||
Sbjct 287 TGCGAATCCAGTCTCTTCAGACCATTGGTCACAGA-AAGCTTTCATTCGATTGATAATTT 229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531773403057760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |