Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq449735 179 4e-40 seq506238 136 4e-27 seq509673 123 3e-23 seq351952 111 2e-19 seq505215 93.3 4e-14 >seq449735 Length=3187 Score = 179 bits (198), Expect = 4e-40 Identities = 482/734 (66%), Gaps = 5/734 (1%) Strand=Plus/Minus Query 141567 TTAGTTGGAATAGCGATTTCACAACATAAGTTACTCTGACGAATTGGAGCTTTTTCACGA 141626 |||||||| | || ||||| ||||||| ||| || ||||| || || || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 141627 ATAAATGGAGTGTAGTTATTCGTGTTATCAACAAACTGTGGATAAATTCGAGCAGTGCCA 141686 || || || ||| |||| || ||||| ||| ||||| ||| | || | Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 141687 GAACGTTCAGTCATGAACAATTCAAAGAGTTCTAGTGCTTTGATTCTTTTCTTTCTGATT 141746 | |||||| | |||| | || ||||| | ||||| || | ||| || | ||| Sbjct 635 GCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACGAATT 576 Query 141747 GTTGGGTCTTTTTCAGCTTTCTCATAAAGCTCACGGAATTTATCTTGATCTTCAAAGAAT 141806 | | ||||| ||| ||| |||||||| | || | ||||| |||||||| ||| Sbjct 575 GATTCGTCTTGTTCGTATTTTACATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAAT 516 Query 141807 GAGTAATATAGTTCGCCTGACATTTCGTGAGGGCTAAATAAAGTAATATAATCATTTTTA 141866 | | || || ||||| || || |||||||| || ||||| || || | |||| Sbjct 515 GCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTA 459 Query 141867 CCAAGGCGTTCCATCATAAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAATACGG 141926 | || ||| || | ||||| ||| | ||||| || | ||| || | ||| Sbjct 458 ATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGG 399 Query 141927 TTTTCATCCACACCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 141986 || ||||| || || ||||||||| || ||||| ||||| ||||||||||| ||||| Sbjct 398 TTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAA 339 Query 141987 ATCGGATAATACGCTGTAGCAGCACCGCCGCGAATACCACCTTGAGAACAAGATTTTACT 142046 | ||| || || || || || ||||| || | ||| ||||| ||||| ||| || Sbjct 338 AGCGGGTAGAACAAGGTTGCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACC 279 Query 142047 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCTGTATGTCGAACTTCACCCATACCG 142106 || ||||| || || || | || |||||| ||| ||||| |||| || | | Sbjct 278 GCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTCGCCATTGCGA 219 Query 142107 ATCTTAGAACCTTCTGCACGAAGCATGCCAACGTTGATACCGATACCAGCTCGTTTAGAA 142166 || | ||| |||||||| || |||| || || || || || |||| || Sbjct 218 ATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGAT 159 Query 142167 ATATATTCGATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142226 | |||| | ||||| | || || |||||| || | | || || || Sbjct 158 ACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCT 99 Query 142227 ATAACTACACAACTAG-AGAACTGGCGAGTCGGAGTACGAGCACCTGCCATAATTGGAGT 142285 || | ||||| || || |||||||| || || |||||| |||||||||||||||| || Sbjct 98 ATTAATACAC-ACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGT 40 Query 142286 AGGCAATGAAACTT 142299 ||| | ||||| || Sbjct 39 AGGTAGTGAAATTT 26 >seq506238 Length=275 Score = 136 bits (150), Expect = 4e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 61288 TCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGAGTTAAAGCGA 61347 || ||||| ||||| | | ||||| |||||||||| || || | |||||||| || Sbjct 49 TCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGC 108 Query 61348 ACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCA 61407 ||||| || || |||||||| || || | || ||||||||||| || || ||||| ||| Sbjct 109 ACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCA 168 Query 61408 TCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 61460 ||||||| ||||||||||| | || || ||||| | |||||||||||||| Sbjct 169 TCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq509673 Length=441 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 141890 ATTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATT 141949 ||| | ||| | ||||| |||||||| || | |||||| || ||||| || |||||| Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 141950 TTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGC 142009 |||||| || |||| ||| |||||||| ||||| | || ||| || || || || Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 142010 ACCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142069 |||||| || | || ||||| || || |||| || ||||||||||| |||| |||| Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400 Query 142070 TGGAATAACACCTGTATG 142087 ||| ||| ||| ||||| Sbjct 401 TGGGATACAACCCGTATG 418 >seq351952 Length=416 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 61278 TTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGTTGTTCCGGAGTCAGAGA 61337 |||||| || | ||||||||||| | ||| || || ||| |||||| | ||| | || Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80 Query 61338 GTTAAAGCGAACTGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 61397 |||||| || ||||| || || |||||||| || || | || ||||| || || |||| Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140 Query 61398 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 61457 | | |||||| | ||||||| || || |||||||| | |||||||||||| Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200 Query 61458 TTCAAT 61463 |||||| Sbjct 201 TTCAAT 206 >seq505215 Length=421 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 44933 ATGGAAACTGTTAGTGTACCAGCCTTTATCGGTAACATCTTTTACGCTTCCATATTTTTC 44992 |||||||||||| ||||| | ||||| || || |||| || || |||| | | || Sbjct 407 ATGGAAACTGTTTGTGTAATAACCTTTGTCAGTTACATTTTCAACTAATCCAAACTCTTT 348 Query 44993 TGTGTCGAGTTTACAGAAACGATAACACAAGTTTTCAGCAGGAGTAGAATATAAACTAAA 45052 ||||| | ||| ||||||| ||| ||||||||| || |||| |||||||||||| Sbjct 347 AGTGTCTAAACGACAAAAACGATCACATAAGTTTTCACTTGGTGTAGCATATAAACTAAA 288 Query 45053 AGCAAATCCAGTTCTTTCGGTCCACTGTTTA-AGATGAGCATTCATTTTAGTTAAAATTT 45111 || |||||||| ||| | ||| || | | ||| ||| |||||| | | | ||||| Sbjct 287 TGCGAATCCAGTCTCTTCAGACCATTGGTCACAGA-AAGCTTTCATTCGATTGATAATTT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531773403057760